Variant report

Variant	nsv897087
Chromosome Location	chr11:24346556-24374408
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:24363950..24364495-chr16:82556810..82557446,2	MCF-7	breast:
2	chr11:24369789..24372325-chr11:24372933..24375140,2	K562	blood:
3	chr11:24369789..24372325-chr11:24372933..24375140,2	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:102 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs374055344	chr11:24364854-24364855	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs76769178	chr11:24364867-24364868	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs562253672	chr11:24364914-24364915	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs527650802	chr11:24364929-24364930	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs376270529	chr11:24364956-24364957	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs564220271	chr11:24364961-24364962	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs375055364	chr11:24364962-24364963	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs533286518	chr11:24364978-24364979	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs371298145	chr11:24364989-24364990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs549556830	chr11:24365033-24365034	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs117117578	chr11:24365039-24365040	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs535296123	chr11:24365054-24365055	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs78441792	chr11:24365065-24365066	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs565852955	chr11:24365096-24365097	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs12801296	chr11:24365118-24365119	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs557818514	chr11:24365144-24365145	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs577800633	chr11:24365251-24365252	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs183495828	chr11:24365256-24365257	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs558270820	chr11:24365291-24365292	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs576540106	chr11:24365297-24365298	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs115273662	chr11:24365315-24365316	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs562377030	chr11:24365318-24365319	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs572677413	chr11:24365326-24365327	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs188232739	chr11:24365342-24365343	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs367854263	chr11:24365343-24365344	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs201026089	chr11:24365344-24365345	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs566213324	chr11:24365384-24365385	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs113979604	chr11:24365395-24365396	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs533249027	chr11:24365403-24365404	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs187297122	chr11:24365424-24365425	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs563644534	chr11:24365427-24365428	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs115688444	chr11:24365452-24365453	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs74506299	chr11:24365480-24365481	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs138293484	chr11:24365501-24365502	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs72159047	chr11:24365502-24365503	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs35872315	chr11:24365527-24365528	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs200615624	chr11:24365528-24365529	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs375503563	chr11:24365562-24365563	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs565945089	chr11:24365574-24365575	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs142595250	chr11:24365593-24365594	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs377728686	chr11:24365723-24365724	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs551391801	chr11:24365776-24365777	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs143549548	chr11:24365807-24365808	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs556553434	chr11:24365810-24365811	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs181864154	chr11:24365820-24365821	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs556983851	chr11:24365822-24365823	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs117078773	chr11:24365828-24365829	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs144751294	chr11:24365860-24365861	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs114256228	chr11:24365862-24365863	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs577168336	chr11:24365863-24365864	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24364800-24366000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:24365200-24366000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:24369800-24371200	Enhancers	Pancreatic Islets	Pancreatic Islet

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