Variant report

Variant	nsv897093
Chromosome Location	chr11:24675207-24736493
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:172)
CpG islands
(count:122)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:172 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BRCA1	chr11:24719060-24719757	Hela-S3	cervix:	n/a	n/a
2	CEBPB	chr11:24707403-24707746	Hela-S3	cervix:	n/a	n/a
3	CEBPB	chr11:24718959-24719791	Hela-S3	cervix:	n/a	n/a
4	CEBPB	chr11:24700455-24700882	Hela-S3	cervix:	n/a	n/a
5	CEBPB	chr11:24719110-24719577	IMR90	lung:	n/a	n/a
6	CHD2	chr11:24719140-24719679	Hela-S3	cervix:	n/a	n/a
7	CHD2	chr11:24701497-24701507	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr11:24709620-24709770	SK-N-SH_RA	brain:	n/a	n/a
9	CTCF	chr11:24687140-24687290	AG04449	skin:	n/a	n/a
10	CTCF	chr11:24687180-24687330	AG09319	gingival:	n/a	n/a
11	CTCF	chr11:24695280-24695430	HPAF	blood vessel:	n/a	n/a
12	CTCF	chr11:24687120-24687270	WERI-Rb-1	eye:	n/a	n/a
13	CTCF	chr11:24683556-24683643	LNCaP	prostate:	n/a	n/a
14	CTCF	chr11:24687180-24687330	AG04449	skin:	n/a	n/a
15	CTCF	chr11:24687231-24687289	MCF-7	breast:	n/a	n/a
16	CTCF	chr11:24687180-24687330	AG04450	lung:	n/a	n/a
17	CTCF	chr11:24687180-24687330	HBMEC	blood vessel:	n/a	n/a
18	CTCF	chr11:24687274-24687292	IMR90	lung:	n/a	n/a
19	CTCF	chr11:24695200-24695350	AoAF	blood vessel:	n/a	n/a
20	CTCF	chr11:24687248-24687297	Hela-S3	cervix:	n/a	n/a
21	CTCF	chr11:24687140-24687290	HEK293	kidney:	n/a	n/a
22	CTCF	chr11:24722846-24722854	GM20000	blood:	n/a	n/a
23	CTCF	chr11:24709460-24709610	SK-N-SH_RA	brain:	n/a	n/a
24	CTCF	chr11:24683549-24683616	Hela-S3	cervix:	n/a	n/a
25	CTCF	chr11:24687200-24687350	WERI-Rb-1	eye:	n/a	n/a
26	CTCF	chr11:24687060-24687210	RPTEC	kidney:	n/a	n/a
27	CTCF	chr11:24687210-24687329	Gliobla	brain:	n/a	n/a
28	CTCF	chr11:24687160-24687310	BE2_C	brain:	n/a	n/a
29	CTCF	chr11:24687140-24687290	BE2_C	brain:	n/a	n/a
30	E2F4	chr11:24707410-24707708	MCF10A-Er-Src	breast:	n/a	n/a
31	EP300	chr11:24719088-24719871	Hela-S3	cervix:	n/a	n/a
32	EP300	chr11:24719123-24719388	SK-N-SH_RA	brain:	n/a	n/a
33	EP300	chr11:24718983-24719789	SK-N-SH	brain:	n/a	n/a
34	EP300	chr11:24719161-24719373	SK-N-SH_RA	brain:	n/a	n/a
35	EP300	chr11:24700603-24700911	Hela-S3	cervix:	n/a	n/a
36	ESR1	chr11:24700579-24700849	T-47D	breast:	n/a	n/a
37	FAM48A	chr11:24696087-24696171	GM12878	blood:	n/a	n/a
38	FOS	chr11:24719254-24719668	Hela-S3	cervix:	n/a	n/a
39	FOS	chr11:24684879-24685029	MCF10A-Er-Src	breast:	n/a	n/a
40	FOS	chr11:24704262-24704416	MCF10A-Er-Src	breast:	n/a	n/a
41	FOS	chr11:24705149-24705458	MCF10A-Er-Src	breast:	n/a	chr11:24705339-24705348 chr11:24705327-24705339 chr11:24705327-24705338 chr11:24705328-24705338 chr11:24705329-24705337
42	FOS	chr11:24719303-24719664	MCF10A-Er-Src	breast:	n/a	n/a
43	FOS	chr11:24730142-24730433	MCF10A-Er-Src	breast:	n/a	n/a
44	FOS	chr11:24704214-24704414	MCF10A-Er-Src	breast:	n/a	chr11:24704238-24704248 chr11:24704238-24704248
45	FOS	chr11:24707466-24707672	MCF10A-Er-Src	breast:	n/a	n/a
46	FOS	chr11:24705147-24705478	MCF10A-Er-Src	breast:	n/a	chr11:24705339-24705348 chr11:24705327-24705339 chr11:24705327-24705338 chr11:24705328-24705338 chr11:24705329-24705337
47	FOS	chr11:24704230-24704421	MCF10A-Er-Src	breast:	n/a	chr11:24704238-24704248 chr11:24704238-24704248
48	FOS	chr11:24719212-24719797	HUVEC	blood vessel:	n/a	n/a
49	FOS	chr11:24719311-24719625	MCF10A-Er-Src	breast:	n/a	n/a
50	FOS	chr11:24705139-24705522	HUVEC	blood vessel:	n/a	chr11:24705339-24705348 chr11:24705327-24705339 chr11:24705327-24705338 chr11:24705328-24705338 chr11:24705329-24705337

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:24709096-24709146	NH-A	brain:	n/a
2	chr11:24709096-24709146	SK-N-MC	brain:	n/a
3	chr11:24709096-24709146	NHBE	bronchial:	n/a
4	chr11:24727469-24727519	BJ	skin:	n/a
5	chr11:24709096-24709146	K562	blood:	n/a
6	chr11:24727469-24727519	HAEpiC	amniotic membrane:	n/a
7	chr11:24709096-24709146	GM12891	blood:	n/a
8	chr11:24727469-24727519	PrEC	prostate:	n/a
9	chr11:24727469-24727519	HRPEpiC	eye:	n/a
10	chr11:24727469-24727519	HIPEpiC	eye:	n/a
11	chr11:24709096-24709146	AoSMC	blood vessel:	n/a
12	chr11:24727469-24727519	U87	brain:	n/a
13	chr11:24709096-24709146	HCT-116	colon:	n/a
14	chr11:24727469-24727519	HUVEC	blood vessel:	n/a
15	chr11:24709096-24709146	SK-N-SH_RA	brain:	n/a
16	chr11:24727469-24727519	PANC-1	pancreas:	n/a
17	chr11:24709096-24709146	HRCEpiC	kidney:	n/a
18	chr11:24709096-24709146	HCM	heart:	n/a
19	chr11:24727469-24727519	MCF10A-Er-Src	breast:	n/a
20	chr11:24727469-24727519	NHDF-neo	bronchial:	n/a
21	chr11:24709096-24709146	HEEpiC	esophagus:	n/a
22	chr11:24727469-24727519	ProgFib	skin:	n/a
23	chr11:24709096-24709146	A549	lung:	n/a
24	chr11:24709096-24709146	HMEC	breast:	n/a
25	chr11:24727469-24727519	A549	lung:	n/a
26	chr11:24727469-24727519	HCPEpiC	choroid plexus:	n/a
27	chr11:24709096-24709146	PFSK-1	brain:	n/a
28	chr11:24727469-24727519	GM19239	blood:	n/a
29	chr11:24709096-24709146	HPAEpiC	pulmonary alveolar:	n/a
30	chr11:24727469-24727519	CMK	blood:	n/a
31	chr11:24727469-24727519	Hela-S3	cervix:	n/a
32	chr11:24709096-24709146	IMR90	lung:	fetal
33	chr11:24727469-24727519	H1-hESC	embryonic stem cell:	embryo
34	chr11:24727469-24727519	Hepatocyte	liver:	n/a
35	chr11:24727469-24727519	HPAEpiC	pulmonary alveolar:	n/a
36	chr11:24709096-24709146	SKMC	muscle:	n/a
37	chr11:24709096-24709146	ovcar-3	ovarian:	n/a
38	chr11:24727469-24727519	GM12892	blood:	n/a
39	chr11:24709096-24709146	SAEC	small airway:	n/a
40	chr11:24727469-24727519	AG09309	skin:	n/a
41	chr11:24709096-24709146	HNPCEpiC	eye:	n/a
42	chr11:24709096-24709146	CMK	blood:	n/a
43	chr11:24709096-24709146	SK-N-SH	brain:	n/a
44	chr11:24709096-24709146	HUVEC	blood vessel:	n/a
45	chr11:24709096-24709146	HRE	kidney:	n/a
46	chr11:24727469-24727519	SAEC	small airway:	n/a
47	chr11:24709096-24709146	HEK293	kidney:	embryo
48	chr11:24727469-24727519	SK-N-SH	brain:	n/a
49	chr11:24727469-24727519	MCF-7	breast:	n/a
50	chr11:24727469-24727519	HRCEpiC	kidney:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:24630589..24632702-chr11:24693704..24695798,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANO3-6	chr11:24722821-24723121	NONHSAT018439

No data

Variant related genes	Relation type
ENSG00000255489	TF binding region
ENSG00000255489	CpG island

Extended variants
information (count: 1518 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:1518 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs72880701	chr11:24685414-24685415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs563752035	chr11:24685446-24685447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs573921786	chr11:24685455-24685456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs567137189	chr11:24685463-24685464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs77498825	chr11:24685469-24685470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs559236148	chr11:24685479-24685480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs3922458	chr11:24685521-24685522	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs184102655	chr11:24685564-24685565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs564927361	chr11:24685565-24685566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs112170631	chr11:24685573-24685574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs146034544	chr11:24685580-24685581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs139607238	chr11:24685585-24685586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs149317437	chr11:24685587-24685588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs549560463	chr11:24685608-24685609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs4444078	chr11:24685638-24685639	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs56745420	chr11:24685649-24685650	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs377190053	chr11:24685650-24685651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs558152960	chr11:24685662-24685663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs148361811	chr11:24685704-24685705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs58474718	chr11:24685708-24685709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs374416221	chr11:24685721-24685722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs538657400	chr11:24685737-24685738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs111975341	chr11:24685762-24685763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs578092364	chr11:24685797-24685798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs537431480	chr11:24685809-24685810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs531564410	chr11:24685836-24685837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs549885827	chr11:24685859-24685860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs144459220	chr11:24685865-24685866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs556697835	chr11:24685880-24685881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs574184400	chr11:24685893-24685894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs543115415	chr11:24685902-24685903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs559512208	chr11:24686008-24686009	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs572934192	chr11:24686049-24686050	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs148402769	chr11:24686066-24686067	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs565029327	chr11:24686084-24686085	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs568437688	chr11:24686087-24686088	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs568103555	chr11:24686110-24686111	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs535382868	chr11:24686152-24686153	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs530465602	chr11:24686161-24686162	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs550172317	chr11:24686175-24686176	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs560503311	chr11:24686189-24686190	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs529763522	chr11:24686202-24686203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs546344337	chr11:24686213-24686214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs566297894	chr11:24686222-24686223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs189402684	chr11:24686231-24686232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs534884752	chr11:24686239-24686240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs535858701	chr11:24686285-24686286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs547086493	chr11:24686288-24686289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs145136089	chr11:24686353-24686354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs573769967	chr11:24686354-24686355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24685400-24686000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:24686000-24686200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:24686200-24691200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:24686400-24687400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr11:24687400-24690400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:24689600-24690000	Enhancers	Fetal Kidney	kidney
7	chr11:24689800-24690400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:24689800-24692000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:24690400-24690800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:24690400-24691400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:24690400-24692000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:24690400-24692000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr11:24690600-24692000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:24690800-24691000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:24690800-24691200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr11:24691200-24691600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr11:24691200-24691800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:24691800-24692000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr11:24691800-24700200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:24692000-24700000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:24699600-24700600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr11:24699600-24702400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:24699800-24700600	Enhancers	Fetal Heart	heart
24	chr11:24699800-24702200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr11:24700000-24700600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr11:24700000-24701200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr11:24700000-24702200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:24700000-24702200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr11:24700000-24702400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr11:24700200-24700600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:24700200-24700800	Enhancers	Hela-S3	cervix
32	chr11:24700200-24702200	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr11:24700600-24701800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:24700600-24701800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:24700600-24710400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr11:24700800-24705000	Weak transcription	Hela-S3	cervix
37	chr11:24701200-24701800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:24701200-24702200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr11:24701400-24702000	Enhancers	H9 Cell Line	embryonic stem cell
40	chr11:24701400-24702200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:24701800-24702000	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr11:24701800-24702400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:24702200-24704000	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr11:24702200-24705200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr11:24702200-24705200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr11:24702200-24709200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:24702400-24703600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:24703600-24704200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:24704000-24709600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:24704200-24704600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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