Variant report

Variant	nsv897094
Chromosome Location	chr11:24761831-24793160
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 934 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:934 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1386253	chr11:24761831-24761832	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs571333728	chr11:24761855-24761856	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs192459839	chr11:24761861-24761862	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs185062172	chr11:24761887-24761888	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs189534213	chr11:24761893-24761894	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs547215139	chr11:24761934-24761935	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs112004204	chr11:24761963-24761964	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs76691794	chr11:24762004-24762005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs566059662	chr11:24762013-24762014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs534860027	chr11:24762034-24762035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs141086626	chr11:24762065-24762066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs578015447	chr11:24762077-24762078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs193058082	chr11:24762111-24762112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs185175075	chr11:24762147-24762148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs543072567	chr11:24762218-24762219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs559660464	chr11:24762220-24762221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs189683655	chr11:24762323-24762324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs111769976	chr11:24762349-24762350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs185057695	chr11:24762370-24762371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs530777310	chr11:24762392-24762393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs550391839	chr11:24762393-24762394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs373005819	chr11:24762413-24762414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs561071658	chr11:24762419-24762420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs149781283	chr11:24762420-24762421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs561665135	chr11:24762424-24762425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs528673935	chr11:24762426-24762427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs146785110	chr11:24762441-24762442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs534994639	chr11:24762465-24762466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs76591941	chr11:24762479-24762480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs2716445	chr11:24762483-24762484	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs116743343	chr11:24762506-24762507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs2631427	chr11:24762577-24762578	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs188261416	chr11:24762627-24762628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs17307110	chr11:24762675-24762676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs181829861	chr11:24762680-24762681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs377308532	chr11:24762774-24762775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs117033121	chr11:24762807-24762808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs573130459	chr11:24762819-24762820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs140637593	chr11:24762841-24762842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs567585072	chr11:24762881-24762882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs372233685	chr11:24762918-24762919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs145667823	chr11:24762924-24762925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs575328736	chr11:24762929-24762930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs138682591	chr11:24762937-24762938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs528089379	chr11:24762961-24762962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs115984519	chr11:24762965-24762966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs529753697	chr11:24762991-24762992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs546147954	chr11:24763047-24763048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs186117341	chr11:24763065-24763066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs560402256	chr11:24763106-24763107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24760600-24762000	Enhancers	Liver	Liver
2	chr11:24761200-24768400	Weak transcription	Dnd41	blood
3	chr11:24766600-24767000	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:24767000-24767400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:24767400-24767600	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:24767600-24768600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr11:24768400-24770000	Enhancers	Dnd41	blood
8	chr11:24768600-24770400	Enhancers	Primary B cells from cord blood	blood
9	chr11:24768600-24770400	Enhancers	Primary B cells from peripheral blood	blood
10	chr11:24768800-24769200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:24768800-24769600	Enhancers	Fetal Muscle Leg	muscle
12	chr11:24768800-24769800	Enhancers	Esophagus	oesophagus
13	chr11:24768800-24769800	Enhancers	Fetal Heart	heart
14	chr11:24768800-24770000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:24768800-24770000	Enhancers	Thymus	Thymus
16	chr11:24768800-24770200	Enhancers	Fetal Thymus	thymus
17	chr11:24769000-24769400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:24769000-24769600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:24769000-24769800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:24769000-24779000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:24769200-24769600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:24769200-24769600	Enhancers	Fetal Muscle Trunk	muscle
23	chr11:24769200-24769600	Enhancers	Hela-S3	cervix
24	chr11:24769200-24769600	Enhancers	NHEK	skin
25	chr11:24769200-24769800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:24769200-24769800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:24769400-24769800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr11:24769400-24770200	Enhancers	Primary hematopoietic stem cells	blood
29	chr11:24769600-24770000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:24769600-24770000	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr11:24769800-24776600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:24770000-24770200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:24770000-24771000	Weak transcription	Thymus	Thymus
34	chr11:24771000-24771200	ZNF genes & repeats	Thymus	Thymus
35	chr11:24772800-24773000	Enhancers	Esophagus	oesophagus
36	chr11:24776000-24776200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr11:24776200-24776800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:24776200-24777000	Enhancers	NHEK	skin
39	chr11:24776200-24777400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:24776200-24777600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:24776200-24778000	Enhancers	Placenta Amnion	Placenta Amnion
42	chr11:24776400-24778000	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr11:24776600-24777400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:24776800-24777400	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr11:24776800-24777800	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr11:24776800-24777800	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr11:24777000-24777600	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr11:24777200-24777600	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr11:24777400-24778400	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr11:24777600-24778400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links