Variant report

Variant	nsv897103
Chromosome Location	chr11:24913489-25145902
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:25131462..25133230-chr11:25136109..25137938,2	MCF-7	breast:
2	chr11:24946469..24947067-chr5:172264421..172265010,2	MCF-7	breast:
3	chr11:24963255..24966039-chr11:24972736..24975455,2	MCF-7	breast:
4	chr11:24996714..24999047-chr11:25009138..25011539,2	K562	blood:
5	chr11:22849480..22851377-chr11:25062549..25065391,2	K562	blood:
6	chr11:25134241..25135929-chr11:25140334..25142884,3	K562	blood:
7	chr11:25033492..25034324-chr14:24994179..24994819,2	MCF-7	breast:
8	chr11:24963255..24966039-chr11:24972736..24975455,2	MCF-7	breast:
9	chr11:25131462..25133230-chr11:25136109..25137938,2	MCF-7	breast:
10	chr11:25134241..25135929-chr11:25140334..25142884,3	K562	blood:
11	chr11:24996714..24999047-chr11:25009138..25011539,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANO3-5	chr11:24913775-24914067	NONHSAT018440

No data

Variant related genes	Relation type
ENSG00000246225	chromatin interactions
ENSG00000198168	chromatin interactions

Extended variants
information (count: 2092 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:2092 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs544165352	chr11:24913805-24913806	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs186541582	chr11:24913873-24913874	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs554891595	chr11:24913879-24913880	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs368609859	chr11:24913883-24913884	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs111255250	chr11:24913899-24913900	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs540434718	chr11:24913934-24913935	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs560253465	chr11:24913949-24913950	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs12278724	chr11:24913953-24913954	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs151183796	chr11:24913954-24913955	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs370733463	chr11:24913990-24913991	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs3598	chr11:24913993-24913994	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs577288338	chr11:24914031-24914032	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs10767271	chr11:24914053-24914054	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs114497846	chr11:24914839-24914840	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs112017200	chr11:24914840-24914841	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs572381431	chr11:24914851-24914852	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs554148361	chr11:24914873-24914874	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs201763112	chr11:24914883-24914884	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs11286293	chr11:24914884-24914885	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs397848499	chr11:24914893-24914894	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs200158698	chr11:24914894-24914895	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs7111460	chr11:24914983-24914984	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs369997460	chr11:24915069-24915070	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs539622893	chr11:24915077-24915078	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs374514172	chr11:24915093-24915094	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs60133666	chr11:24915094-24915095	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs555947365	chr11:24915095-24915096	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs576104789	chr11:24915100-24915101	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs541398161	chr11:24915111-24915112	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs34920138	chr11:24915140-24915141	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs57570267	chr11:24915181-24915182	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs116369218	chr11:24915265-24915266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs147810153	chr11:24915277-24915278	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs560889861	chr11:24915317-24915318	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs532554585	chr11:24915319-24915320	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs369399135	chr11:24915340-24915341	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs61221172	chr11:24915342-24915343	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs72209181	chr11:24915344-24915345	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs546391727	chr11:24915345-24915346	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs562810389	chr11:24915346-24915347	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs10834533	chr11:24915376-24915377	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs548733428	chr11:24915397-24915398	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs567261597	chr11:24917283-24917284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs374259270	chr11:24917296-24917297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs574755559	chr11:24917312-24917313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs574210972	chr11:24917380-24917381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs11028261	chr11:24917393-24917394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs7479243	chr11:24917424-24917425	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs12574840	chr11:24917426-24917427	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs147760535	chr11:24917492-24917493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24914800-24915400	Enhancers	Fetal Brain Male	brain
2	chr11:24917200-24918000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:24917200-24931400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:24918000-24918400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:24921600-24921800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:24921600-24921800	Enhancers	Liver	Liver
7	chr11:24921600-24922200	Enhancers	Dnd41	blood
8	chr11:24921800-24922000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:24921800-24922200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:24921800-24922200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:24921800-24922400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:24921800-24922800	Flanking Active TSS	Liver	Liver
13	chr11:24922000-24922200	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr11:24922000-24922400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:24922200-24922400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
16	chr11:24922200-24922400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr11:24922200-24922600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:24922400-24922800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:24922800-24923400	Enhancers	Liver	Liver
20	chr11:24923400-24924800	Weak transcription	Liver	Liver
21	chr11:24924800-24925600	Enhancers	Liver	Liver
22	chr11:24925000-24925400	Enhancers	Gastric	stomach
23	chr11:24929800-24930200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:24931400-24932200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:24931800-24932200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:24932200-24932400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
27	chr11:24932400-24932800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:24953600-24953800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:24953600-24953800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:24953600-24953800	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr11:24953600-24954000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr11:24953800-24954400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:24953800-24954400	Enhancers	NHEK	skin
34	chr11:24953800-24954600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:24953800-24954600	Enhancers	Esophagus	oesophagus
36	chr11:24953800-24954600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr11:24953800-24954600	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr11:24954000-24954400	Active TSS	Rectal Mucosa Donor 31	rectum
39	chr11:24954200-24954400	Enhancers	Colonic Mucosa	Colon
40	chr11:24954200-24954800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr11:24954400-24954600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
42	chr11:24954400-24954800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:24954600-24954800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:24954600-24954800	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr11:24956400-24956800	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr11:24956400-24957000	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr11:24956600-24956800	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr11:24956600-24957400	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr11:24957600-24958400	Enhancers	Fetal Intestine Large	intestine
50	chr11:24958000-24958400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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