Variant report

Variant	nsv897141
Chromosome Location	chr11:26659406-26674033
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:26669136..26671365-chr14:104584975..104586845,2	MCF-7	breast:
2	chr11:26318438..26319350-chr11:26670793..26671982,7	MCF-7	breast:
3	chr11:26544159..26545613-chr11:26671003..26672359,7	MCF-7	breast:

Extended variants
information (count: 541 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:541 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6484224	chr11:26659406-26659407	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs116879144	chr11:26659408-26659409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs563895841	chr11:26659445-26659446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs140076996	chr11:26659454-26659455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs561117296	chr11:26659474-26659475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs6484225	chr11:26659507-26659508	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs57832010	chr11:26659508-26659509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs6484226	chr11:26659524-26659525	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs78905073	chr11:26659531-26659532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs374508200	chr11:26659532-26659533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs7952675	chr11:26659533-26659534	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs533221583	chr11:26659542-26659543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs6484227	chr11:26659565-26659566	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs566708256	chr11:26659580-26659581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs183129999	chr11:26659591-26659592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs111779336	chr11:26659597-26659598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs6484228	chr11:26659615-26659616	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs6484229	chr11:26659658-26659659	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs6484230	chr11:26659699-26659700	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs186806130	chr11:26659729-26659730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs554287027	chr11:26659746-26659747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs142936870	chr11:26659783-26659784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs557743594	chr11:26659863-26659864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs547807097	chr11:26659909-26659910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs540220497	chr11:26659922-26659923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs72881705	chr11:26659968-26659969	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs6484231	chr11:26659995-26659996	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs544018564	chr11:26660063-26660064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs6484232	chr11:26660082-26660083	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs533255209	chr11:26660083-26660084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs6484233	chr11:26660110-26660111	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs560626936	chr11:26660147-26660148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs150636411	chr11:26660148-26660149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs549341614	chr11:26660154-26660155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs372424542	chr11:26660162-26660163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs34459184	chr11:26660189-26660190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs139790266	chr11:26660277-26660278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs191420374	chr11:26660346-26660347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs571828723	chr11:26660446-26660447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs185079145	chr11:26660503-26660504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs149764119	chr11:26660524-26660525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs376000281	chr11:26660630-26660631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs372101449	chr11:26660649-26660650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs375461851	chr11:26660654-26660655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs369861611	chr11:26660671-26660672	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs142586107	chr11:26660789-26660790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs566539618	chr11:26660799-26660800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs201175330	chr11:26660812-26660813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs372785864	chr11:26660823-26660824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs554909062	chr11:26660829-26660830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Neuroticism	17667963	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Ependymoma	20639864	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26645200-26671600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26671400-26671800	Enhancers	Colon Smooth Muscle	Colon
3	chr11:26671600-26671800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:26671600-26671800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
5	chr11:26671600-26671800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:26671600-26671800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:26671600-26671800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:26671600-26671800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:26671600-26671800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:26671600-26671800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:26671600-26671800	Bivalent Enhancer	Fetal Intestine Large	intestine
12	chr11:26671600-26672000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:26671600-26672000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:26671600-26672000	Active TSS	NHDF-Ad	bronchial
15	chr11:26673200-26676600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:26673600-26674200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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