Variant report

Variant	nsv897145
Chromosome Location	chr11:26794368-26876833
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26872205..26875117-chr11:26880752..26883354,2	K562	blood:

Extended variants
information (count: 2303 )
Associated
traits (count: 51 )

Variant overlapped rSNPs/rCNVs (count:2303 , 50 per page) page: 1 2 3 4 5 6 7 ... 47

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4506601	chr11:26794368-26794369	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs185161779	chr11:26794398-26794399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs563345394	chr11:26794403-26794404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs530418277	chr11:26794416-26794417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs546110303	chr11:26794431-26794432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs11029707	chr11:26794445-26794446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs143459781	chr11:26794457-26794458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs146283742	chr11:26794482-26794483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs546402663	chr11:26794545-26794546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs375604483	chr11:26794584-26794585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs567872437	chr11:26794598-26794599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs188030642	chr11:26794600-26794601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs550793536	chr11:26794615-26794616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs139130062	chr11:26794649-26794650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs35268598	chr11:26794686-26794687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs192827853	chr11:26794694-26794695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs184362507	chr11:26794710-26794711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs538594225	chr11:26794730-26794731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs567187935	chr11:26794768-26794769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs534455885	chr11:26794800-26794801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs149936906	chr11:26794854-26794855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs574284650	chr11:26794857-26794858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs541951663	chr11:26794868-26794869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs117461891	chr11:26794903-26794904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs188137662	chr11:26794974-26794975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs372647598	chr11:26795006-26795007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs73440529	chr11:26795020-26795021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs564073366	chr11:26795048-26795049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs528377749	chr11:26795055-26795056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs56306395	chr11:26795139-26795140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs561594207	chr11:26795189-26795190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs529044475	chr11:26795218-26795219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs35031231	chr11:26795227-26795228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs182007158	chr11:26795254-26795255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs184651573	chr11:26795265-26795266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs538341601	chr11:26795270-26795271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs189054061	chr11:26795286-26795287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs76637002	chr11:26795299-26795300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs181809650	chr11:26795311-26795312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs144923399	chr11:26795321-26795322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs549691066	chr11:26795355-26795356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs117240071	chr11:26795360-26795361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs186839113	chr11:26795390-26795391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs114995873	chr11:26795396-26795397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs575257110	chr11:26795402-26795403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs71480141	chr11:26795423-26795424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs11029708	chr11:26795452-26795453	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs557332490	chr11:26795465-26795466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs572500895	chr11:26795482-26795483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs540175966	chr11:26795555-26795556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:51)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Neuroticism	17667963	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Cancer	20164919	CNVD

Chromatin state (count:329 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26791000-26799600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:26792000-26801400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:26798400-26799000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:26798600-26798800	Enhancers	Colon Smooth Muscle	Colon
5	chr11:26798600-26799000	Enhancers	Brain Anterior Caudate	brain
6	chr11:26798600-26799000	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr11:26798600-26799200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:26798600-26799200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:26798600-26799400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:26798600-26799400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:26798600-26799400	Enhancers	NHDF-Ad	bronchial
12	chr11:26798600-26799600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:26798600-26799600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:26798600-26799600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:26798600-26799800	Enhancers	Fetal Stomach	stomach
16	chr11:26798600-26800200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:26798600-26800200	Enhancers	Rectal Smooth Muscle	rectum
18	chr11:26798600-26801000	Enhancers	Fetal Kidney	kidney
19	chr11:26798600-26801800	Enhancers	Fetal Muscle Leg	muscle
20	chr11:26798800-26799200	Flanking Active TSS	Colon Smooth Muscle	Colon
21	chr11:26798800-26799200	Enhancers	NHLF	lung
22	chr11:26798800-26799200	Enhancers	Osteobl	bone
23	chr11:26798800-26799400	Enhancers	Fetal Lung	lung
24	chr11:26798800-26799800	Enhancers	Adipose Nuclei	Adipose
25	chr11:26798800-26800400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:26799000-26800200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:26799200-26799600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:26799200-26799600	Active TSS	NHLF	lung
29	chr11:26799200-26799800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:26799200-26800200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:26799200-26800400	Enhancers	Colon Smooth Muscle	Colon
32	chr11:26799200-26800400	Flanking Active TSS	Osteobl	bone
33	chr11:26799400-26799600	Flanking Active TSS	NHDF-Ad	bronchial
34	chr11:26799400-26799800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr11:26799400-26800200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:26799400-26800400	Enhancers	HMEC	breast
37	chr11:26799400-26800400	Enhancers	NH-A	brain
38	chr11:26799600-26799800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:26799600-26799800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:26799600-26799800	Flanking Active TSS	NHLF	lung
41	chr11:26799600-26800000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:26799600-26800000	Active TSS	NHDF-Ad	bronchial
43	chr11:26799600-26801000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:26799800-26800000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:26799800-26800000	Enhancers	Muscle Satellite Cultured Cells	--
46	chr11:26799800-26800000	Active TSS	NHLF	lung
47	chr11:26799800-26800400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:26799800-26800400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:26800000-26800200	Flanking Active TSS	NHLF	lung
50	chr11:26800000-26800400	Flanking Active TSS	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links