Variant report

Variant	nsv898359
Chromosome Location	chr11:106523574-106656863
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:106592230..106592824-chr11:106908108..106908648,2	MCF-7	breast:
2	chr11:105912834..105914761-chr11:106533441..106535821,2	K562	blood:
3	chr11:106480957..106482975-chr11:106532869..106534369,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GUCY1A2-1	chr11:106544738-106550066	ENSG00000260512.1
2	lnc-GUCY1A2-1	chr11:106544748-106546997	NONHSAT023989

Extended variants
information (count: 4230 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:4230 , 50 per page) page: 1 2 3 4 5 6 7 ... 85

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192339856	chr11:106538410-106538411	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs145374014	chr11:106538492-106538493	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs140172849	chr11:106538520-106538521	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs11211846	chr11:106538523-106538524	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs143928622	chr11:106538581-106538582	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs561501654	chr11:106538597-106538598	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs183830829	chr11:106538668-106538669	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs146778757	chr11:106538699-106538700	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs1629132	chr11:106538703-106538704	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs567338803	chr11:106538724-106538725	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs114113323	chr11:106538745-106538746	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs551323560	chr11:106538788-106538789	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs77509311	chr11:106538842-106538843	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs75178820	chr11:106538885-106538886	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs548854056	chr11:106538923-106538924	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs567170869	chr11:106538930-106538931	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs143688705	chr11:106538994-106538995	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs189196991	chr11:106538999-106539000	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs76570950	chr11:106539020-106539021	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs369832346	chr11:106539056-106539057	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs116946678	chr11:106539057-106539058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs544968469	chr11:106539147-106539148	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs192239365	chr11:106539179-106539180	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs115386792	chr11:106539243-106539244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs376150395	chr11:106539248-106539249	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs557063735	chr11:106539294-106539295	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs151064293	chr11:106539373-106539374	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs555301925	chr11:106539390-106539391	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs184554189	chr11:106539399-106539400	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs188407723	chr11:106539445-106539446	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs117260387	chr11:106539500-106539501	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs191716954	chr11:106539518-106539519	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs76970550	chr11:106539539-106539540	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs184168814	chr11:106539590-106539591	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs560132773	chr11:106539624-106539625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs527288346	chr11:106539637-106539638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs542516223	chr11:106539652-106539653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs376300404	chr11:106539673-106539674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs117009217	chr11:106539676-106539677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs113499284	chr11:106539698-106539699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs147572035	chr11:106539712-106539713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs549918227	chr11:106539721-106539722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs71041680	chr11:106539727-106539728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs141016516	chr11:106539731-106539732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs368750330	chr11:106539752-106539753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs368176694	chr11:106539753-106539754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs188916693	chr11:106539754-106539755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs12365931	chr11:106539767-106539768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs78174326	chr11:106539768-106539769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs202029242	chr11:106539769-106539770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD
Melanoma	17363583	CNVD

Chromatin state (count:214 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106538400-106539600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr11:106538400-106539600	Enhancers	NH-A	brain
3	chr11:106539600-106540600	Weak transcription	NH-A	brain
4	chr11:106540600-106541800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:106540600-106541800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:106540600-106541800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:106540600-106541800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:106540600-106541800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:106540600-106541800	Enhancers	Dnd41	blood
10	chr11:106540800-106541000	Enhancers	NH-A	brain
11	chr11:106540800-106541600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:106540800-106541600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:106540800-106541800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:106540800-106542000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr11:106541200-106541800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr11:106541800-106544000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:106541800-106550400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:106542000-106542600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:106542600-106542800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:106543600-106547600	Weak transcription	Fetal Brain Male	brain
21	chr11:106544000-106544400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:106544400-106545000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr11:106545000-106550400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:106547600-106548000	Enhancers	Fetal Brain Male	brain
25	chr11:106547600-106548200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:106548000-106550400	Weak transcription	Fetal Brain Male	brain
27	chr11:106548200-106550400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:106549200-106550200	Enhancers	Fetal Brain Female	brain
29	chr11:106550200-106550800	Weak transcription	Fetal Brain Female	brain
30	chr11:106550400-106550800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr11:106550400-106550800	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr11:106550400-106550800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr11:106550400-106550800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr11:106550400-106551000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:106550400-106551000	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr11:106550400-106551400	Enhancers	Fetal Brain Male	brain
37	chr11:106550800-106551000	Enhancers	Fetal Brain Female	brain
38	chr11:106551000-106552000	Weak transcription	Fetal Brain Female	brain
39	chr11:106551000-106554000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:106552800-106628200	Weak transcription	Pancreas	Pancrea
41	chr11:106553000-106560000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr11:106554000-106554400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:106554400-106560400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:106554800-106585000	Weak transcription	Fetal Lung	lung
45	chr11:106555600-106557200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:106556000-106567200	Weak transcription	Ovary	ovary
47	chr11:106557200-106558200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:106558200-106566000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:106565400-106568600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:106565800-106567000	Enhancers	NH-A	brain

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