Variant report

Variant	nsv898360
Chromosome Location	chr11:106566114-106598286
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:106592230..106592824-chr11:106908108..106908648,2	MCF-7	breast:

Extended variants
information (count: 1221 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:1221 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11211867	chr11:106566114-106566115	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs530790042	chr11:106566116-106566117	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs115642183	chr11:106566131-106566132	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs538469506	chr11:106566161-106566162	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs11211868	chr11:106566190-106566191	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs570504442	chr11:106566199-106566200	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs535164537	chr11:106566210-106566211	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs553178910	chr11:106566221-106566222	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs568146722	chr11:106566239-106566240	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs535480052	chr11:106566260-106566261	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs11211869	chr11:106566329-106566330	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs11211870	chr11:106566338-106566339	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs17105958	chr11:106566395-106566396	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs546134470	chr11:106566488-106566489	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs531175355	chr11:106566521-106566522	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs558376921	chr11:106566543-106566544	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs573348927	chr11:106566551-106566552	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs371265749	chr11:106566581-106566582	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs558964238	chr11:106566606-106566607	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs541154155	chr11:106566645-106566646	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs559161758	chr11:106566665-106566666	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs529784840	chr11:106566764-106566765	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs571329593	chr11:106566797-106566798	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs541860415	chr11:106566807-106566808	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs563231913	chr11:106566828-106566829	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs150625580	chr11:106566880-106566881	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs552181600	chr11:106566890-106566891	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs570663458	chr11:106566954-106566955	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs528254467	chr11:106566965-106566966	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs546748571	chr11:106566990-106566991	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs10789536	chr11:106567017-106567018	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs186788087	chr11:106567027-106567028	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs112322889	chr11:106567031-106567032	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs11211871	chr11:106567081-106567082	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs540073525	chr11:106567134-106567135	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs669844	chr11:106567135-106567136	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs540166864	chr11:106567154-106567155	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs183832750	chr11:106567198-106567199	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs573625300	chr11:106567211-106567212	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs573411992	chr11:106567212-106567213	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs534150882	chr11:106567235-106567236	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs542546331	chr11:106567264-106567265	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs139772382	chr11:106567298-106567299	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs574593908	chr11:106567306-106567307	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs149384433	chr11:106567325-106567326	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs563317357	chr11:106567396-106567397	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs575299682	chr11:106567417-106567418	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs79504931	chr11:106567452-106567453	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs187894667	chr11:106567494-106567495	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs575808981	chr11:106567514-106567515	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106552800-106628200	Weak transcription	Pancreas	Pancrea
2	chr11:106554800-106585000	Weak transcription	Fetal Lung	lung
3	chr11:106556000-106567200	Weak transcription	Ovary	ovary
4	chr11:106565400-106568600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:106565800-106567000	Enhancers	NH-A	brain
6	chr11:106566000-106566400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr11:106566000-106567000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:106566000-106569000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:106566200-106566800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:106566200-106567000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:106566200-106568600	Enhancers	NHEK	skin
12	chr11:106566200-106568800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:106566400-106567600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:106567000-106567400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:106567000-106567800	Weak transcription	NH-A	brain
16	chr11:106567400-106567800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:106567400-106568200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:106567800-106568000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr11:106567800-106568000	Enhancers	NH-A	brain
20	chr11:106573600-106573800	Enhancers	Left Ventricle	heart
21	chr11:106574800-106575200	Enhancers	NHEK	skin
22	chr11:106575200-106576600	Weak transcription	NHEK	skin
23	chr11:106576600-106577800	Enhancers	NHEK	skin
24	chr11:106576800-106577200	Enhancers	HMEC	breast
25	chr11:106576800-106577800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr11:106577000-106577400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:106577000-106577600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:106577000-106577600	Enhancers	NH-A	brain
29	chr11:106577000-106577800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:106577600-106585200	Weak transcription	NH-A	brain
31	chr11:106579000-106579400	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr11:106583400-106583800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr11:106583400-106595800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:106583600-106583800	Enhancers	Ovary	ovary
35	chr11:106583600-106598000	Weak transcription	Fetal Brain Male	brain
36	chr11:106583800-106585200	Weak transcription	Ovary	ovary
37	chr11:106583800-106586600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:106584800-106585400	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr11:106584800-106585600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:106585000-106585400	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr11:106585000-106585400	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr11:106585000-106585400	Enhancers	Fetal Kidney	kidney
43	chr11:106585000-106585600	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr11:106585000-106585600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:106585000-106585600	Enhancers	Fetal Lung	lung
46	chr11:106585200-106585400	Enhancers	NH-A	brain
47	chr11:106585200-106585600	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr11:106585200-106585600	Enhancers	Ovary	ovary
49	chr11:106585600-106586600	Weak transcription	Ovary	ovary
50	chr11:106585600-106587600	Weak transcription	Fetal Lung	lung

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