Variant report

Variant	nsv898371
Chromosome Location	chr11:107049968-107130964
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:107114259..107116985-chr11:107121608..107123484,2	K562	blood:
2	chr11:107081384..107083481-chr11:107086943..107088953,2	K562	blood:
3	chr11:107069683..107071743-chr11:107086703..107088900,2	K562	blood:
4	chr11:107123368..107125286-chr11:107129770..107131910,2	K562	blood:
5	chr11:107123368..107125286-chr11:107129770..107131910,2	K562	blood:
6	chr11:107121227..107123059-chr11:107129085..107131752,2	K562	blood:
7	chr11:107096224..107098662-chr11:107099428..107101008,2	K562	blood:
8	chr11:107069683..107071743-chr11:107086703..107088900,2	K562	blood:
9	chr11:107081384..107083481-chr11:107086943..107088953,2	K562	blood:
10	chr11:107108368..107111074-chr11:107113381..107114991,2	K562	blood:
11	chr11:107096224..107098662-chr11:107099428..107101008,2	K562	blood:
12	chr11:107114259..107116985-chr11:107121608..107123484,2	K562	blood:
13	chr11:107121227..107123059-chr11:107129085..107131752,2	K562	blood:
14	chr11:107108368..107111074-chr11:107113381..107114991,2	K562	blood:

No data

Extended variants
information (count: 1911 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:1911 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552733374	chr11:107050658-107050659	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs78699502	chr11:107050660-107050661	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs112682865	chr11:107050672-107050673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs183532409	chr11:107050682-107050683	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs563523388	chr11:107050693-107050694	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs575396698	chr11:107050723-107050724	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs373324261	chr11:107050780-107050781	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs546099583	chr11:107050796-107050797	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs368469735	chr11:107050868-107050869	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs372635133	chr11:107050883-107050884	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs139503272	chr11:107050917-107050918	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs528697888	chr11:107050925-107050926	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs528827072	chr11:107050933-107050934	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs546971494	chr11:107050971-107050972	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs553855148	chr11:107051002-107051003	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs145119789	chr11:107051040-107051041	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs529391595	chr11:107051049-107051050	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs545445700	chr11:107051086-107051087	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs187576769	chr11:107051106-107051107	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs569396702	chr11:107051146-107051147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs530677577	chr11:107051147-107051148	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs371256998	chr11:107051171-107051172	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs570714085	chr11:107051221-107051222	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs534655903	chr11:107051242-107051243	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs552910039	chr11:107051286-107051287	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs192768232	chr11:107051294-107051295	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs565432857	chr11:107051511-107051512	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs556608456	chr11:107051515-107051516	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs150959627	chr11:107051527-107051528	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs376613185	chr11:107051576-107051577	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs546371536	chr11:107051648-107051649	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs77107062	chr11:107051696-107051697	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs35035075	chr11:107051750-107051751	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs372104923	chr11:107051751-107051752	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs573463111	chr11:107051766-107051767	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs540606083	chr11:107051778-107051779	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs139853666	chr11:107051779-107051780	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs184677160	chr11:107051794-107051795	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs529277366	chr11:107051795-107051796	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs189902955	chr11:107051800-107051801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs570437535	chr11:107053427-107053428	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs377614309	chr11:107053438-107053439	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs55720985	chr11:107053439-107053440	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs200196761	chr11:107053440-107053441	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs398115797	chr11:107053441-107053442	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs201126072	chr11:107053443-107053444	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs538454870	chr11:107053447-107053448	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs556865423	chr11:107053463-107053464	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs578196757	chr11:107053464-107053465	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs538613225	chr11:107053467-107053468	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD
Renal cell carcinoma	21668985	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Cancer	20164920	CNVD

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107050600-107051400	Enhancers	Adipose Nuclei	Adipose
2	chr11:107050600-107051800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:107053400-107053800	Enhancers	NH-A	brain
4	chr11:107053800-107055000	Weak transcription	NH-A	brain
5	chr11:107054600-107055400	Enhancers	Fetal Brain Female	brain
6	chr11:107054600-107056400	Enhancers	Fetal Brain Male	brain
7	chr11:107054800-107055200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:107054800-107056000	Enhancers	Fetal Lung	lung
9	chr11:107055000-107055200	Enhancers	NH-A	brain
10	chr11:107063800-107064000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:107063800-107064000	ZNF genes & repeats	Left Ventricle	heart
12	chr11:107067000-107069400	Enhancers	HepG2	liver
13	chr11:107067200-107067400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:107067200-107069200	Enhancers	A549	lung
15	chr11:107067600-107068000	Enhancers	Fetal Intestine Large	intestine
16	chr11:107067600-107068200	Enhancers	Liver	Liver
17	chr11:107068200-107072400	Weak transcription	Liver	Liver
18	chr11:107069000-107072800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:107069200-107069800	Enhancers	Adipose Nuclei	Adipose
20	chr11:107069200-107070000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:107069400-107072600	Weak transcription	HepG2	liver
22	chr11:107070000-107072600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:107072200-107073200	Enhancers	Fetal Brain Male	brain
24	chr11:107072200-107074600	Enhancers	Fetal Brain Female	brain
25	chr11:107072400-107073600	Enhancers	Liver	Liver
26	chr11:107072600-107073200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:107072600-107074800	Enhancers	HepG2	liver
28	chr11:107072800-107073000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:107072800-107073200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:107073000-107073800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:107073200-107073600	Weak transcription	Fetal Brain Male	brain
32	chr11:107073600-107074800	Enhancers	Fetal Brain Male	brain
33	chr11:107073800-107074000	Enhancers	Fetal Intestine Large	intestine
34	chr11:107073800-107074600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:107074400-107074800	Enhancers	Fetal Intestine Large	intestine
36	chr11:107076000-107076600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:107076200-107076600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:107079000-107081000	Enhancers	Fetal Brain Male	brain
39	chr11:107079800-107081000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:107081000-107085800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:107081000-107089200	Weak transcription	Fetal Brain Male	brain
42	chr11:107084400-107084800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:107085600-107085800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:107085600-107085800	Enhancers	Fetal Kidney	kidney
45	chr11:107085800-107086400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:107085800-107089000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr11:107086400-107089400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:107088200-107089800	Enhancers	Fetal Intestine Small	intestine
49	chr11:107088400-107090200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr11:107088800-107090200	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links