Variant report

Variant	nsv898776
Chromosome Location	chr12:10909412-11032045
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr12:10923738-10924091	HepG2	liver:	n/a	n/a
2	ARID3A	chr12:10923755-10924078	K562	blood:	n/a	n/a
3	ATF1	chr12:10962443-10962562	K562	blood:	n/a	n/a
4	ATF1	chr12:10931742-10932079	K562	blood:	n/a	n/a
5	BACH1	chr12:10956402-10956471	K562	blood:	n/a	n/a
6	CBX3	chr12:11008384-11008726	K562	blood:	n/a	n/a
7	CEBPB	chr12:10987867-10987868	A549	lung:	n/a	n/a
8	CEBPB	chr12:11006697-11006894	HepG2	liver:	n/a	n/a
9	CEBPB	chr12:10982615-10982928	H1-hESC	embryonic stem cell:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
10	CEBPB	chr12:10935865-10936264	MCF-7	breast:	n/a	chr12:10936059-10936070
11	CEBPB	chr12:10935986-10936115	K562	blood:	n/a	chr12:10936059-10936070
12	CEBPB	chr12:10923810-10924073	A549	lung:	n/a	n/a
13	CEBPB	chr12:10982596-10982976	A549	lung:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
14	CEBPB	chr12:10982567-10982993	ECC-1	luminal epithelium:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
15	CEBPB	chr12:10982537-10982911	A549	lung:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
16	CEBPB	chr12:10935886-10936197	ECC-1	luminal epithelium:	n/a	chr12:10936059-10936070
17	CEBPB	chr12:10927020-10927303	A549	lung:	n/a	chr12:10927157-10927166 chr12:10927157-10927166 chr12:10927157-10927166 chr12:10927155-10927168 chr12:10927155-10927166 chr12:10927157-10927166 chr12:10927156-10927167 chr12:10927155-10927168
18	CEBPB	chr12:10971235-10971292	K562	blood:	n/a	n/a
19	CEBPB	chr12:10982557-10982917	MCF-7	breast:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
20	CEBPB	chr12:10927048-10927261	Hela-S3	cervix:	n/a	chr12:10927157-10927166 chr12:10927157-10927166 chr12:10927157-10927166 chr12:10927155-10927168 chr12:10927155-10927166 chr12:10927157-10927166 chr12:10927156-10927167 chr12:10927155-10927168
21	CEBPB	chr12:10982601-10982894	A549	lung:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
22	CEBPB	chr12:10982540-10982996	ECC-1	luminal epithelium:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
23	CEBPB	chr12:10935891-10936243	IMR90	lung:	n/a	chr12:10936059-10936070
24	CEBPB	chr12:10927016-10927332	IMR90	lung:	n/a	chr12:10927157-10927166 chr12:10927157-10927166 chr12:10927157-10927166 chr12:10927155-10927168 chr12:10927155-10927166 chr12:10927157-10927166 chr12:10927156-10927167 chr12:10927155-10927168
25	CEBPB	chr12:10935885-10936233	K562	blood:	n/a	chr12:10936059-10936070
26	CEBPB	chr12:10935894-10936247	A549	lung:	n/a	chr12:10936059-10936070
27	CEBPB	chr12:10982604-10982971	IMR90	lung:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
28	CEBPB	chr12:10923782-10924041	IMR90	lung:	n/a	n/a
29	CEBPB	chr12:10941889-10941983	K562	blood:	n/a	chr12:10941940-10941951
30	CEBPB	chr12:10941807-10942067	HepG2	liver:	n/a	chr12:10941940-10941951
31	CEBPB	chr12:10935876-10936247	HepG2	liver:	n/a	chr12:10936059-10936070
32	CEBPB	chr12:10982592-10982969	K562	blood:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
33	CEBPB	chr12:10935876-10936255	Hela-S3	cervix:	n/a	chr12:10936059-10936070
34	CEBPB	chr12:10979955-10979993	K562	blood:	n/a	chr12:10979966-10979975 chr12:10979966-10979977 chr12:10979964-10979977 chr12:10979964-10979975 chr12:10979966-10979975 chr12:10979966-10979975 chr12:10979975-10979986 chr12:10979966-10979975
35	CEBPB	chr12:10941841-10942046	A549	lung:	n/a	chr12:10941940-10941951
36	CEBPB	chr12:10935833-10936278	MCF-7	breast:	n/a	chr12:10936059-10936070
37	CEBPB	chr12:10926986-10927335	HepG2	liver:	n/a	chr12:10927157-10927166 chr12:10927157-10927166 chr12:10927157-10927166 chr12:10927155-10927168 chr12:10927155-10927166 chr12:10927157-10927166 chr12:10927156-10927167 chr12:10927155-10927168
38	CEBPB	chr12:10982600-10982974	HepG2	liver:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
39	CEBPB	chr12:10982605-10982977	Hela-S3	cervix:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
40	CEBPB	chr12:10979822-10980059	HepG2	liver:	n/a	chr12:10979966-10979975 chr12:10979966-10979977 chr12:10979964-10979977 chr12:10979964-10979975 chr12:10979966-10979975 chr12:10979966-10979975 chr12:10979975-10979986 chr12:10979966-10979975
41	CEBPB	chr12:10941830-10942089	IMR90	lung:	n/a	chr12:10941940-10941951
42	CEBPB	chr12:10923790-10924074	Hela-S3	cervix:	n/a	n/a
43	CEBPB	chr12:10935891-10936185	H1-hESC	embryonic stem cell:	n/a	chr12:10936059-10936070
44	CEBPB	chr12:10923824-10924022	K562	blood:	n/a	n/a
45	CTCF	chr12:10920560-10920710	GM12873	blood:	n/a	n/a
46	CTCF	chr12:11020108-11020209	Pancreas_OC	pancreas:	n/a	n/a
47	CTCF	chr12:11020058-11020253	HepG2	liver:	n/a	n/a
48	CTCF	chr12:11020151-11020204	GM10266	blood:	n/a	n/a
49	CTCF	chr12:10923800-10924047	A549	lung:	n/a	chr12:10923918-10923939
50	CTCF	chr12:10923840-10923990	GM12872	blood:	n/a	chr12:10923918-10923939

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:10956452-10956502	HEEpiC	esophagus:	n/a
2	chr12:11001596-11001646	SK-N-SH_RA	brain:	n/a
3	chr12:10961541-10961591	NB4	blood:	n/a
4	chr12:10956452-10956502	HEEpiC	esophagus:	n/a
5	chr12:11001596-11001646	SK-N-SH_RA	brain:	n/a
6	chr12:10961541-10961591	NB4	blood:	n/a
7	chr12:11002411-11002461	Hepatocyte	liver:	n/a
8	chr12:10962437-10962487	SK-N-MC	brain:	n/a
9	chr12:10956452-10956502	RPTEC	kidney:	n/a
10	chr12:10956452-10956502	HRCEpiC	kidney:	n/a
11	chr12:10958919-10958969	Hepatocyte	liver:	n/a
12	chr12:11002609-11002659	HRCEpiC	kidney:	n/a
13	chr12:10961076-10961126	Hela-S3	cervix:	n/a
14	chr12:11002071-11002121	AG04449	skin:	fetal
15	chr12:11002411-11002461	SK-N-MC	brain:	n/a
16	chr12:11001596-11001646	HRCEpiC	kidney:	n/a
17	chr12:11002609-11002659	AoSMC	blood vessel:	n/a
18	chr12:10958919-10958969	SK-N-SH_RA	brain:	n/a
19	chr12:10978950-10979000	NHBE	bronchial:	n/a
20	chr12:10958919-10958969	HL-60	blood:	n/a
21	chr12:10999279-10999329	T-47D	breast:	n/a
22	chr12:10961541-10961591	GM12878	blood:	n/a
23	chr12:10954529-10954579	AG10803	skin:	n/a
24	chr12:10961541-10961591	AG04449	skin:	fetal
25	chr12:11002609-11002659	T-47D	breast:	n/a
26	chr12:11002609-11002659	AG04449	skin:	fetal
27	chr12:10978950-10979000	H1-hESC	embryonic stem cell:	embryo
28	chr12:10978947-10978997	Hepatocyte	liver:	n/a
29	chr12:11001596-11001646	NB4	blood:	n/a
30	chr12:11002403-11002453	HIPEpiC	eye:	n/a
31	chr12:10956452-10956502	GM12892	blood:	n/a
32	chr12:11002411-11002461	NT2-D1	testis:	n/a
33	chr12:10962437-10962487	GM12878	blood:	n/a
34	chr12:11002197-11002247	AoSMC	blood vessel:	n/a
35	chr12:10954529-10954579	AG09319	gingival:	n/a
36	chr12:10978950-10979000	HNPCEpiC	eye:	n/a
37	chr12:11002411-11002461	CMK	blood:	n/a
38	chr12:10978947-10978997	AG04449	skin:	fetal
39	chr12:10954529-10954579	GM19239	blood:	n/a
40	chr12:10958919-10958969	PFSK-1	brain:	n/a
41	chr12:10958919-10958969	ovcar-3	ovarian:	n/a
42	chr12:10958919-10958969	SK-N-MC	brain:	n/a
43	chr12:11005841-11005891	GM12878	blood:	n/a
44	chr12:10962437-10962487	MCF-7	breast:	n/a
45	chr12:11002403-11002453	LNCaP	prostate:	n/a
46	chr12:10961076-10961126	SK-N-SH	brain:	n/a
47	chr12:10999279-10999329	AG09309	skin:	n/a
48	chr12:11005841-11005891	NHDF-neo	bronchial:	n/a
49	chr12:11002609-11002659	HAEpiC	amniotic membrane:	n/a
50	chr12:11004644-11004694	HepG2	liver:	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:10923485..10924800-chr12:11352236..11353220,4	MCF-7	breast:
2	chr12:10923706..10924220-chr12:11352723..11353239,2	K562	blood:
3	chr12:10923458..10924277-chr12:11707052..11707592,2	K562	blood:
4	chr12:10972024..10973693-chr12:10978137..10980866,2	K562	blood:
5	chr12:10923542..10924154-chr12:11639667..11640247,2	MCF-7	breast:
6	chr12:10994480..10997147-chr12:11004836..11006507,2	MCF-7	breast:
7	chr12:10994716..10997527-chr12:11072038..11073829,2	K562	blood:
8	chr12:10951582..10953191-chr12:10954611..10956191,2	K562	blood:
9	chr12:10923421..10924942-chr12:11638999..11640209,11	K562	blood:
10	chr10:44305858..44306365-chr12:10923506..10924325,2	MCF-7	breast:
11	chr12:10873486..10875554-chr12:10907869..10909889,2	MCF-7	breast:
12	chr12:11019655..11020615-chr12:11352279..11353067,3	MCF-7	breast:
13	chr12:10923804..10924411-chr12:11352563..11353080,2	MCF-7	breast:
14	chr12:10959931..10962000-chr12:10963027..10965251,2	K562	blood:
15	chr12:10961808..10964056-chr12:11322515..11324346,2	MCF-7	breast:
16	chr12:10969213..10971751-chr12:10989074..10992031,3	MCF-7	breast:
17	chr12:10959931..10962000-chr12:10963027..10965251,2	K562	blood:
18	chr12:11009323..11011109-chr12:11168207..11170860,2	K562	blood:
19	chr12:10969213..10971751-chr12:10989074..10992031,3	MCF-7	breast:
20	chr12:11019756..11020639-chr12:11381127..11381814,2	MCF-7	breast:
21	chr12:10994480..10997147-chr12:11004836..11006507,2	MCF-7	breast:
22	chr12:11020127..11020741-chr12:11054048..11054735,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRH1-1	chr12:11000971-11001533	NONHSAT026903
2	lnc-PRH1-1	chr12:10999644-10999734	NONHSAT026903
3	lnc-PRH2-1	chr12:10929111-10929400	ENSG00000256888
4	lnc-PRH1-1	chr12:10998448-10998549	NONHSAT026903
5	lnc-PRH1-1	chr12:11000971-11001006	NONHSAT026904
6	lnc-PRH1-1	chr12:11000964-11001693	NONHSAT026905
7	lnc-PRH1-1	chr12:11000971-11001006	NR_037918
8	lnc-TAS2R10-1	chr12:10983673-10984615	NONHSAT026902
9	lnc-PRH1-1	chr12:11001121-11001158	NONHSAT026904
10	lnc-PRH2-1	chr12:10929917-10930038	ENSG00000256888
11	lnc-PRH2-1	chr12:10921992-10922045	ENSG00000256888
12	lnc-PRH1-1	chr12:10999644-10999966	NR_037918
13	lnc-PRH1-1	chr12:11001973-11002074	NONHSAT026905
14	lnc-PRH2-3	chr12:10922904-10923204	NONHSAT026901
15	lnc-PRH2-1	chr12:10929917-10929987	ENSG00000256888
16	lnc-PRH2-1	chr12:10929917-10930043	ENSG00000256888
17	lnc-PRH2-1	chr12:10929111-10929400	ENSG00000256888
18	lnc-PRH2-1	chr12:10926551-10926583	ENSG00000256888
19	lnc-PRH2-1	chr12:10926551-10926583	ENSG00000256888
20	lnc-PRH2-1	chr12:10921992-10922045	ENSG00000256888
21	lnc-PRH2-1	chr12:10926551-10926583	ENSG00000256888
22	lnc-PRH2-1	chr12:10927405-10927465	ENSG00000256888
23	lnc-PRH2-1	chr12:10922020-10922045	ENSG00000256888
24	lnc-PRH2-1	chr12:10928464-10928583	ENSG00000256888
25	lnc-PRH1-1	chr12:10998448-10998549	NR_037918
26	lnc-PRH1-1	chr12:10999805-10999966	NONHSAT026904

Variant related genes	Relation type
HSPE1P12	TF binding region
TAS2R10	TF binding region
TAS2R7	TF binding region
PRR4	TF binding region
ENSG00000256888	TF binding region
TAS2R9	TF binding region
TAS2R8	TF binding region
ENSG00000256651	TF binding region
HSPE1P12	CpG island
TAS2R10	CpG island
TAS2R7	CpG island
PRR4	CpG island
ENSG00000256888	CpG island
TAS2R9	CpG island
TAS2R8	CpG island
ENSG00000256651	CpG island
ENSG00000121318	chromatin interactions
ENSG00000121377	chromatin interactions
ENSG00000060138	chromatin interactions
ENSG00000256537	chromatin interactions
ENSG00000212127	chromatin interactions
ENSG00000256712	chromatin interactions
ENSG00000255790	chromatin interactions
ENSG00000111215	chromatin interactions

Extended variants
information (count: 2926 )
Associated
traits (count: 97 )

Variant overlapped rSNPs/rCNVs (count:2926 , 50 per page) page: 1 2 3 4 5 6 7 ... 59

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7316817	chr12:10909412-10909413	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs180961563	chr12:10909418-10909419	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs527771139	chr12:10909422-10909423	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs185032684	chr12:10909425-10909426	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs578182249	chr12:10909433-10909434	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs560905254	chr12:10909527-10909528	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs192492871	chr12:10909542-10909543	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs537686620	chr12:10909571-10909572	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs79673066	chr12:10909588-10909589	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs141354079	chr12:10909600-10909601	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs374375115	chr12:10909618-10909619	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs183643686	chr12:10909628-10909629	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs552389141	chr12:10909637-10909638	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs565926946	chr12:10909652-10909653	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs534661165	chr12:10909684-10909685	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs548318273	chr12:10909730-10909731	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs147000468	chr12:10909739-10909740	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs537072299	chr12:10909777-10909778	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs557623682	chr12:10909816-10909817	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs138092566	chr12:10909824-10909825	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs34404292	chr12:10909860-10909861	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs370383202	chr12:10909867-10909868	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs114489275	chr12:10909880-10909881	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs538988808	chr12:10909884-10909885	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs533965050	chr12:10911856-10911857	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs541805686	chr12:10911879-10911880	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs149864948	chr12:10911881-10911882	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs530631700	chr12:10911928-10911929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs190308648	chr12:10911958-10911959	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs372960564	chr12:10912038-10912039	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs181621226	chr12:10912146-10912147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs546176554	chr12:10912165-10912166	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs184273261	chr12:10912177-10912178	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs111781489	chr12:10912187-10912188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs528711242	chr12:10912208-10912209	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs145560977	chr12:10912282-10912283	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs374374561	chr12:10912283-10912284	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs188693952	chr12:10912298-10912299	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs60497781	chr12:10912299-10912300	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs370645527	chr12:10912313-10912314	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs557562392	chr12:10912337-10912338	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs570942751	chr12:10912390-10912391	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs539979455	chr12:10912396-10912397	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs534604391	chr12:10912417-10912418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs548682952	chr12:10912463-10912464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs553401577	chr12:10912472-10912473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs144675133	chr12:10912618-10912619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs59174975	chr12:10912680-10912681	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs114896212	chr12:10912708-10912709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs575522042	chr12:10912709-10912710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:97)

Disease	PMID	Source
Acute lymphoblastic leukemia	17690704	CNVD
Medulloblastoma	16968546	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Hepatocellular carcinoma	16750200	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Breast cancer	22032731	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	21965145	CNVD
Acute myeloid leukemia	16864856	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Disorders of sex development	21048976	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Prostate cancer	19156837	CNVD
Emphysema	19352772	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Malignant germ cell tumour	17285132	CNVD
Melanoma	18172304	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	21264507	CNVD
Cancer	16751803	CNVD
Testicular cancer	18059402	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Seminomas	18059402	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Testicular germ cell tumor	18059402	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21858162	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21611746	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Squamous cell cancer	19607727	CNVD
Prostate cancer	16573809	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute myeloid leukemia	17268525	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Ovarian cancer	21720365	CNVD
Melanoma	20877625	CNVD
Ovarian cancer	21781307	CNVD
Acute myeloid leukemia	17237825	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Osteosarcoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Acute myeloid leukemia	20729466	CNVD

Chromatin state (count:774 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10908200-10909600	ZNF genes & repeats	Liver	Liver
2	chr12:10911800-10912400	Enhancers	Fetal Intestine Small	intestine
3	chr12:10912400-10912800	Weak transcription	Fetal Intestine Small	intestine
4	chr12:10912800-10913400	Enhancers	Fetal Intestine Small	intestine
5	chr12:10917000-10917200	ZNF genes & repeats	Aorta	Aorta
6	chr12:10922800-10923200	Bivalent Enhancer	Stomach Mucosa	stomach
7	chr12:10924800-10925400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:10929200-10929400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:10953800-10955200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr12:10953800-10955200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:10954000-10954200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:10954200-10954400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:10954200-10954600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr12:10954200-10955800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr12:10954200-10955800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr12:10954400-10954600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr12:10954400-10955200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:10954400-10955200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr12:10954400-10955600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr12:10954400-10955600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr12:10954400-10955600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr12:10954400-10955600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr12:10954400-10955600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:10954600-10955000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:10954600-10955400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr12:10954600-10955600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr12:10955000-10955800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr12:10955200-10955400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr12:10955200-10955600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr12:10955400-10955600	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr12:10955400-10956000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr12:10955600-10955800	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr12:10955600-10955800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr12:10955600-10960600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr12:10955600-10961000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr12:10955800-10958000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr12:10955800-10960400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr12:10955800-10961000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr12:10958000-10958400	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr12:10960400-10961000	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr12:10960600-10961200	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr12:10961000-10961400	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr12:10961000-10961400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr12:10961000-10961800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr12:10961200-10962200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr12:10961400-10962600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr12:10961600-10962000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr12:10973600-11009600	Weak transcription	HSMM	muscle
49	chr12:10974600-10975200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr12:10977800-10978000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links