Variant report

Variant	nsv900690
Chromosome Location	chr13:84877516-85052477
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:84940801..84943789-chr13:84949467..84951854,2	MCF-7	breast:
2	chr13:84940801..84943789-chr13:84949467..84951854,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-33	chr13:84880741-84880883	l_892_chr13:84835760-84884253_testes
2	lnc-SLITRK5-33	chr13:84883737-84884253	l_892_chr13:84835760-84884253_testes
3	lnc-SLITRK5-33	chr13:85014374-85014466	NONHSAT034550
4	lnc-SLITRK5-33	chr13:85016512-85016706	NONHSAT034550
5	lnc-SLITRK5-33	chr13:85005210-85005339	NONHSAT034550

No data

Extended variants
information (count: 3434 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:3434 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2329318	chr13:84877516-84877517	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs530644308	chr13:84877522-84877523	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs138315912	chr13:84877561-84877562	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs563851973	chr13:84877592-84877593	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs139818542	chr13:84880411-84880412	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs553773009	chr13:84880413-84880414	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs567499212	chr13:84880429-84880430	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs9602440	chr13:84880449-84880450	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs143207378	chr13:84880469-84880470	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs556328525	chr13:84880507-84880508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs555938418	chr13:84880531-84880532	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs576168972	chr13:84880534-84880535	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs545041760	chr13:84880542-84880543	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs558480487	chr13:84880575-84880576	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs562664342	chr13:84880761-84880762	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs2150138	chr13:84880837-84880838	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs74641064	chr13:84880842-84880843	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs541588661	chr13:84883759-84883760	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs561467856	chr13:84883793-84883794	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs530475849	chr13:84883811-84883812	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs550167973	chr13:84883830-84883831	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs116865597	chr13:84883834-84883835	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs377534532	chr13:84883841-84883842	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs111338564	chr13:84883842-84883843	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs532936315	chr13:84883850-84883851	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs200449958	chr13:84883855-84883856	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs201545974	chr13:84883856-84883857	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs552620951	chr13:84883891-84883892	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs566330589	chr13:84883898-84883899	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs117955551	chr13:84883901-84883902	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs555156922	chr13:84883940-84883941	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs374945904	chr13:84884002-84884003	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs185224358	chr13:84884027-84884028	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs117385561	chr13:84884077-84884078	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs577198241	chr13:84884124-84884125	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs546165238	chr13:84884129-84884130	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs188177848	chr13:84884136-84884137	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs376776265	chr13:84884165-84884166	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs541173865	chr13:84884173-84884174	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs143244281	chr13:84884246-84884247	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs556818289	chr13:84884247-84884248	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs554061669	chr13:84888404-84888405	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs372586568	chr13:84888477-84888478	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs115470276	chr13:84888478-84888479	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs556441335	chr13:84888479-84888480	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs576567114	chr13:84888514-84888515	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs79310206	chr13:84888515-84888516	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs547495139	chr13:84888573-84888574	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs189889550	chr13:84888818-84888819	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs565403471	chr13:84888834-84888835	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Breast cancer	21858162	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Urothelial cell carcinoma	18451213	CNVD
Developmental delay	19490664	CNVD
Neurodevelopmental disorder	22521361	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Epilepsy	20502679	CNVD
Non-small cell lung cancer	16651412	CNVD
Osteosarcoma	21215367	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:230 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84877200-84877600	Enhancers	Dnd41	blood
2	chr13:84880400-84880600	Enhancers	Left Ventricle	heart
3	chr13:84888400-84888600	Enhancers	Brain Germinal Matrix	brain
4	chr13:84888800-84891000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:84889200-84889600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:84889200-84891000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:84889400-84890200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr13:84889600-84890000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:84889600-84890000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr13:84889600-84890000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:84889600-84890000	Enhancers	Brain Substantia Nigra	brain
12	chr13:84889600-84890200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr13:84889600-84890200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr13:84889600-84890200	Enhancers	Fetal Brain Female	brain
15	chr13:84889600-84890400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr13:84890000-84890400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:84890600-84891000	Enhancers	Brain Germinal Matrix	brain
18	chr13:84891000-84893000	Weak transcription	Brain Germinal Matrix	brain
19	chr13:84891000-84893200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:84893000-84894800	Enhancers	Brain Germinal Matrix	brain
21	chr13:84893200-84895000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr13:84893600-84894600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr13:84902800-84903200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr13:84906000-84906600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr13:84906000-84906800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr13:84906000-84907000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr13:84906400-84907000	Enhancers	Brain Germinal Matrix	brain
28	chr13:84906400-84907000	Enhancers	Fetal Brain Male	brain
29	chr13:84906600-84907000	Enhancers	Fetal Brain Female	brain
30	chr13:84910200-84910800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr13:84924000-84924400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr13:84926600-84927800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr13:84927000-84927800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr13:84930000-84930400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr13:84930200-84930600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr13:84936800-84937400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr13:84936800-84937600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr13:84937400-84938400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr13:84938400-84938600	Enhancers	Muscle Satellite Cultured Cells	--
40	chr13:84951200-84951600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr13:84951200-84951600	Enhancers	Fetal Brain Female	brain
42	chr13:84952400-84952600	ZNF genes & repeats	Aorta	Aorta
43	chr13:84952600-84952800	Weak transcription	Aorta	Aorta
44	chr13:84955000-84955400	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr13:84957400-84958200	Weak transcription	Esophagus	oesophagus
46	chr13:84958600-84959000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr13:84964600-84967800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr13:84965400-84972600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr13:84966200-84966800	Weak transcription	HMEC	breast
50	chr13:84966800-84969000	Enhancers	HMEC	breast

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