Variant report

Variant	nsv900794
Chromosome Location	chr13:88910106-89033066
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:88973778..88975590-chr13:88975862..88978691,2	MCF-7	breast:
2	chr13:88973778..88975590-chr13:88975862..88978691,2	MCF-7	breast:
3	chr13:88917657..88918177-chr6:157007973..157008592,2	Hela-S3	cervix:

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-18	chr13:89001824-89001971	l_896_chr13:89001067-89003744_testes
2	lnc-SLITRK6-20	chr13:89003986-89004059	NONHSAT034612
3	lnc-SLITRK5-18	chr13:89001068-89001533	l_896_chr13:89001067-89003744_testes
4	lnc-SLITRK6-19	chr13:88950629-88950764	NONHSAT034611
5	lnc-SLITRK6-20	chr13:88998946-88999466	NONHSAT034612
6	lnc-SLITRK6-20	chr13:89001456-89001545	NONHSAT034612
7	lnc-SLITRK6-20	chr13:89001488-89001532	NONHSAT034613
8	lnc-SLITRK6-20	chr13:89002360-89002644	NONHSAT034613
9	lnc-SLITRK6-19	chr13:88927863-88928392	NONHSAT034611
10	lnc-SLITRK5-18	chr13:89002360-89003744	l_896_chr13:89001067-89003744_testes

No data

Extended variants
information (count: 959 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:959 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs138152697	chr13:88918407-88918408	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs577184776	chr13:88918440-88918441	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs193224525	chr13:88918444-88918445	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs556266684	chr13:88918450-88918451	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs574687112	chr13:88918473-88918474	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs149585999	chr13:88918508-88918509	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs560747100	chr13:88918509-88918510	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs527930051	chr13:88918511-88918512	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs75399745	chr13:88918577-88918578	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs563891310	chr13:88918592-88918593	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs567020720	chr13:88918604-88918605	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs557194620	chr13:88918639-88918640	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs36124147	chr13:88918670-88918671	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs528674573	chr13:88918672-88918673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs145718273	chr13:88918737-88918738	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs9520036	chr13:88918767-88918768	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs549902231	chr13:88918769-88918770	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs568204638	chr13:88918774-88918775	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs573616102	chr13:88918775-88918776	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs529010223	chr13:88918782-88918783	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs547231745	chr13:88918816-88918817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs138943464	chr13:88918833-88918834	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs539320148	chr13:88919044-88919045	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs184540667	chr13:88919078-88919079	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs570492539	chr13:88919100-88919101	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs572303253	chr13:88919129-88919130	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs142179070	chr13:88919152-88919153	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs556228186	chr13:88919182-88919183	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs574551986	chr13:88919191-88919192	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs117416712	chr13:88919195-88919196	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs188903316	chr13:88919212-88919213	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs572614700	chr13:88919240-88919241	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs546162655	chr13:88919305-88919306	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs146368703	chr13:88919338-88919339	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs148577855	chr13:88919370-88919371	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs142015283	chr13:88919376-88919377	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs561672770	chr13:88919419-88919420	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs374445866	chr13:88919435-88919436	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs528970081	chr13:88919448-88919449	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs368236537	chr13:88919494-88919495	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs150717161	chr13:88919520-88919521	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs574299737	chr13:88919532-88919533	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs36107617	chr13:88919566-88919567	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs139066076	chr13:88919568-88919569	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs372321581	chr13:88919658-88919659	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs541204608	chr13:88919661-88919662	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs531280222	chr13:88919682-88919683	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs375348545	chr13:88919733-88919734	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs551382272	chr13:88919832-88919833	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs549504500	chr13:88919834-88919835	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17847001	CNVD
Medulloblastoma	19270706	CNVD
Non-small cell lung cancer	16651412	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88918400-88920000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:88919000-88919600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:88919600-88923200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr13:88923200-88923400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:88923200-88923600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:88923400-88923800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr13:88923800-88924200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr13:88937600-88938600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr13:88955400-88955600	Enhancers	Primary B cells from peripheral blood	blood
10	chr13:88955600-88955800	Enhancers	Primary B cells from cord blood	blood
11	chr13:88955600-88956000	Active TSS	Primary B cells from peripheral blood	blood
12	chr13:88955600-88956200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:88955800-88956200	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr13:88956000-88957000	Enhancers	Primary B cells from peripheral blood	blood
15	chr13:88956200-88956600	Enhancers	Primary B cells from cord blood	blood
16	chr13:88970400-88970600	Enhancers	Pancreas	Pancrea
17	chr13:88972200-88973000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr13:88997000-89002000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:88998000-88998200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:89002200-89002600	Enhancers	Fetal Heart	heart
21	chr13:89008000-89008200	Enhancers	Gastric	stomach
22	chr13:89013000-89013200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr13:89013000-89013400	Enhancers	Fetal Heart	heart
24	chr13:89021200-89021800	Enhancers	Fetal Lung	lung
25	chr13:89025800-89026000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:89028000-89036200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr13:89029200-89029800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood

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