Variant report

Variant	nsv900795
Chromosome Location	chr13:88924395-88993957
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:88973778..88975590-chr13:88975862..88978691,2	MCF-7	breast:
2	chr13:88973778..88975590-chr13:88975862..88978691,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-19	chr13:88927863-88928392	NONHSAT034611
2	lnc-SLITRK6-19	chr13:88950629-88950764	NONHSAT034611

Extended variants
information (count: 192 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:192 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs566274806	chr13:88927904-88927905	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs558504117	chr13:88927910-88927911	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs540080132	chr13:88927914-88927915	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs558392832	chr13:88927922-88927923	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs191416663	chr13:88927942-88927943	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs183507523	chr13:88927975-88927976	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs575276642	chr13:88927986-88927987	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs555309971	chr13:88928024-88928025	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs573591863	chr13:88928027-88928028	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs541096892	chr13:88928066-88928067	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs201599290	chr13:88928077-88928078	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs189405376	chr13:88928088-88928089	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs577402952	chr13:88928162-88928163	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs370313827	chr13:88928174-88928175	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs148134956	chr13:88928189-88928190	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs550553347	chr13:88928206-88928207	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs530805701	chr13:88928211-88928212	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs542571298	chr13:88928273-88928274	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs567218162	chr13:88928300-88928301	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs562097028	chr13:88928354-88928355	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs536179131	chr13:88928363-88928364	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs531620284	chr13:88937611-88937612	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs549835947	chr13:88937613-88937614	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs185841429	chr13:88937619-88937620	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs529996028	chr13:88937665-88937666	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs9514546	chr13:88937676-88937677	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs566597791	chr13:88937688-88937689	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs534048172	chr13:88937711-88937712	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs190649231	chr13:88937712-88937713	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs77599639	chr13:88937713-88937714	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs538525506	chr13:88937735-88937736	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs556934613	chr13:88937754-88937755	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs75356360	chr13:88937816-88937817	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs541802860	chr13:88937835-88937836	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs553827756	chr13:88937864-88937865	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs572139012	chr13:88937865-88937866	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs12865999	chr13:88937918-88937919	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs78433118	chr13:88937926-88937927	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs141074611	chr13:88937938-88937939	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs531452434	chr13:88937943-88937944	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs543612484	chr13:88937955-88937956	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs578075038	chr13:88937960-88937961	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs529171567	chr13:88938019-88938020	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs9558781	chr13:88938026-88938027	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs116102235	chr13:88938027-88938028	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs527761377	chr13:88938046-88938047	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs72632567	chr13:88938111-88938112	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs571012520	chr13:88938129-88938130	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs79405241	chr13:88938145-88938146	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs556801711	chr13:88938155-88938156	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17847001	CNVD
Medulloblastoma	19270706	CNVD
Non-small cell lung cancer	16651412	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88937600-88938600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr13:88955400-88955600	Enhancers	Primary B cells from peripheral blood	blood
3	chr13:88955600-88955800	Enhancers	Primary B cells from cord blood	blood
4	chr13:88955600-88956000	Active TSS	Primary B cells from peripheral blood	blood
5	chr13:88955600-88956200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:88955800-88956200	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr13:88956000-88957000	Enhancers	Primary B cells from peripheral blood	blood
8	chr13:88956200-88956600	Enhancers	Primary B cells from cord blood	blood
9	chr13:88970400-88970600	Enhancers	Pancreas	Pancrea
10	chr13:88972200-88973000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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