Variant report

Variant	nsv900808
Chromosome Location	chr13:88963676-89043326
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:88973778..88975590-chr13:88975862..88978691,2	MCF-7	breast:
2	chr13:88973778..88975590-chr13:88975862..88978691,2	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-20	chr13:89001488-89001532	NONHSAT034613
2	lnc-SLITRK6-20	chr13:89001456-89001545	NONHSAT034612
3	lnc-SLITRK5-18	chr13:89001068-89001533	l_896_chr13:89001067-89003744_testes
4	lnc-SLITRK5-18	chr13:89002360-89003744	l_896_chr13:89001067-89003744_testes
5	lnc-SLITRK6-20	chr13:88998946-88999466	NONHSAT034612
6	lnc-SLITRK6-20	chr13:89002360-89002644	NONHSAT034613
7	lnc-SLITRK6-20	chr13:89003986-89004059	NONHSAT034612
8	lnc-SLITRK5-18	chr13:89001824-89001971	l_896_chr13:89001067-89003744_testes

No data

Extended variants
information (count: 777 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:777 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs143555067	chr13:88970415-88970416	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs563465233	chr13:88970497-88970498	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs543540473	chr13:88970498-88970499	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs531113248	chr13:88970514-88970515	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs75861257	chr13:88970553-88970554	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs36071623	chr13:88970555-88970556	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs187815586	chr13:88970582-88970583	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs573904489	chr13:88970584-88970585	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs139302715	chr13:88970594-88970595	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs192302267	chr13:88970595-88970596	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs12856589	chr13:88972214-88972215	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs12856598	chr13:88972223-88972224	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs529702319	chr13:88972233-88972234	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs12856904	chr13:88972256-88972257	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs147949715	chr13:88972357-88972358	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs180888750	chr13:88972366-88972367	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs187351497	chr13:88972442-88972443	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs527468156	chr13:88972459-88972460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs141863262	chr13:88972522-88972523	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs558556066	chr13:88972527-88972528	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs561753313	chr13:88972548-88972549	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs537703756	chr13:88972560-88972561	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs9558892	chr13:88972575-88972576	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs569126007	chr13:88972588-88972589	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs536673604	chr13:88972622-88972623	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs554742914	chr13:88972635-88972636	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs573319797	chr13:88972662-88972663	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs143005523	chr13:88972663-88972664	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs2067801	chr13:88972688-88972689	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs115514384	chr13:88972735-88972736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs561216044	chr13:88972745-88972746	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs577516380	chr13:88972753-88972754	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs34450569	chr13:88972814-88972815	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs544879071	chr13:88972832-88972833	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs563210576	chr13:88972846-88972847	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs370586908	chr13:88972848-88972849	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs574322498	chr13:88972864-88972865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs541845455	chr13:88972885-88972886	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs559982560	chr13:88972886-88972887	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs527431776	chr13:88972946-88972947	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs551859815	chr13:88972970-88972971	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs372117489	chr13:88997003-88997004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs183551062	chr13:88997006-88997007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs534946967	chr13:88997018-88997019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs553703054	chr13:88997035-88997036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs578238824	chr13:88997036-88997037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs374803573	chr13:88997037-88997038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs540475314	chr13:88997038-88997039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs539352659	chr13:88997081-88997082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs141439651	chr13:88997082-88997083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17847001	CNVD
Medulloblastoma	19270706	CNVD
Non-small cell lung cancer	16651412	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88970400-88970600	Enhancers	Pancreas	Pancrea
2	chr13:88972200-88973000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:88997000-89002000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:88998000-88998200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:89002200-89002600	Enhancers	Fetal Heart	heart
6	chr13:89008000-89008200	Enhancers	Gastric	stomach
7	chr13:89013000-89013200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:89013000-89013400	Enhancers	Fetal Heart	heart
9	chr13:89021200-89021800	Enhancers	Fetal Lung	lung
10	chr13:89025800-89026000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr13:89028000-89036200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:89029200-89029800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:89035800-89037400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr13:89036200-89038200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:89036400-89036800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr13:89036600-89037000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr13:89036600-89037600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr13:89036800-89037000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr13:89036800-89037800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr13:89037000-89037200	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr13:89037200-89037400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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