Variant report

Variant	nsv900863
Chromosome Location	chr13:90067507-90145824
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:90066931..90069093-chr13:90072518..90074200,2	MCF-7	breast:
2	chr13:90066931..90069093-chr13:90072518..90074200,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-11	chr13:90129862-90130391	XLOC_010685

Extended variants
information (count: 1942 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:1942 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78344642	chr13:90075680-90075681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs542678306	chr13:90075729-90075730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs36076298	chr13:90075741-90075742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs561136676	chr13:90075748-90075749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs528440397	chr13:90075778-90075779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs35109239	chr13:90075822-90075823	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs112678460	chr13:90075876-90075877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs532789728	chr13:90075908-90075909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs551170832	chr13:90075922-90075923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs532397158	chr13:90075924-90075925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs138494761	chr13:90075926-90075927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs34707440	chr13:90075953-90075954	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs566347665	chr13:90076008-90076009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs146188945	chr13:90076029-90076030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs533777956	chr13:90076030-90076031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs114403710	chr13:90076138-90076139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs537965051	chr13:90076168-90076169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570709598	chr13:90076206-90076207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs537720128	chr13:90076228-90076229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs148393626	chr13:90076240-90076241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs555101379	chr13:90076246-90076247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs182820943	chr13:90076248-90076249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs375152681	chr13:90076273-90076274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs547999734	chr13:90076281-90076282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs368436694	chr13:90076285-90076286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs142567569	chr13:90076352-90076353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs568584891	chr13:90076372-90076373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs534462111	chr13:90076378-90076379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs377588037	chr13:90076395-90076396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs34003672	chr13:90076396-90076397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs185691288	chr13:90076409-90076410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs150523420	chr13:90076418-90076419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs370688560	chr13:90076436-90076437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs370583695	chr13:90076454-90076455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs139511651	chr13:90076456-90076457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs190893478	chr13:90076471-90076472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs375704018	chr13:90076475-90076476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs144449555	chr13:90076524-90076525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs182781060	chr13:90076537-90076538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs147818533	chr13:90076668-90076669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs367614092	chr13:90076679-90076680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs530268407	chr13:90076739-90076740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs141462146	chr13:90076748-90076749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs73579976	chr13:90076785-90076786	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs16942924	chr13:90076816-90076817	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs187499125	chr13:90076861-90076862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs545071653	chr13:90076872-90076873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs552129122	chr13:90076888-90076889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs570081554	chr13:90076894-90076895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs35653161	chr13:90076895-90076896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Cancer	20164920	CNVD
Non-small cell lung cancer	16651412	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90075600-90084800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:90078800-90107200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:90099200-90099400	Enhancers	Fetal Lung	lung
4	chr13:90099200-90100200	Enhancers	Fetal Heart	heart
5	chr13:90099400-90099800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:90099400-90099800	Flanking Active TSS	Fetal Lung	lung
7	chr13:90099800-90100000	Enhancers	Fetal Lung	lung
8	chr13:90100200-90103000	Weak transcription	Fetal Heart	heart
9	chr13:90103000-90103400	Enhancers	Fetal Heart	heart
10	chr13:90103600-90107200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:90104200-90107600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr13:90106600-90111600	Enhancers	NHEK	skin
13	chr13:90107000-90111600	Enhancers	HMEC	breast
14	chr13:90107200-90110600	Enhancers	HUVEC	blood vessel
15	chr13:90107200-90111400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:90107200-90111400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:90107600-90107800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr13:90107800-90108200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:90108000-90108200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr13:90108000-90108200	Enhancers	Hela-S3	cervix
21	chr13:90108000-90108400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:90108200-90109600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr13:90108200-90111600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr13:90108400-90108800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr13:90108600-90109800	Weak transcription	Hela-S3	cervix
26	chr13:90108800-90109800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr13:90109600-90111200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr13:90109800-90110000	Enhancers	Placenta Amnion	Placenta Amnion
29	chr13:90109800-90110200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr13:90109800-90110200	Enhancers	A549	lung
31	chr13:90109800-90110600	Enhancers	Hela-S3	cervix
32	chr13:90109800-90110800	Enhancers	Adipose Nuclei	Adipose
33	chr13:90109800-90111000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr13:90109800-90111200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:90110200-90110600	Flanking Active TSS	A549	lung
36	chr13:90111600-90112600	Weak transcription	HMEC	breast
37	chr13:90114600-90115600	Enhancers	Fetal Heart	heart
38	chr13:90116200-90117200	Weak transcription	HMEC	breast
39	chr13:90117200-90118000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr13:90117200-90118200	Enhancers	HMEC	breast
41	chr13:90117800-90118000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr13:90118000-90119000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr13:90119000-90119600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr13:90138200-90138600	Enhancers	Fetal Heart	heart
45	chr13:90138600-90139400	Weak transcription	Fetal Heart	heart
46	chr13:90139400-90139600	Enhancers	Fetal Heart	heart

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