Variant report

Variant	nsv900865
Chromosome Location	chr13:90289165-90432585
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:90347808..90348492-chr13:90905964..90906495,2	MCF-7	breast:
2	chr13:90418481..90420847-chr13:90437525..90440214,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-26	chr13:90353649-90353765	NONHSAT034635
2	lnc-SLITRK6-26	chr13:90376736-90376852	NONHSAT034635
3	lnc-SLITRK6-26	chr13:90351476-90351493	NONHSAT034635
4	lnc-SLITRK6-26	chr13:90343642-90343795	NONHSAT034635
5	lnc-SLITRK6-26	chr13:90341209-90342696	NONHSAT034635
6	lnc-SLITRK6-26	chr13:90361586-90361709	NONHSAT034635

No data

Extended variants
information (count: 2920 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:2920 , 50 per page) page: 1 2 3 4 5 6 7 ... 59

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78696688	chr13:90296618-90296619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs533660780	chr13:90296638-90296639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs7333388	chr13:90296652-90296653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs577825878	chr13:90296757-90296758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs183963314	chr13:90296763-90296764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs188252379	chr13:90296764-90296765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs370909996	chr13:90296799-90296800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs575934400	chr13:90296861-90296862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs150393923	chr13:90296962-90296963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs562032907	chr13:90296975-90296976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs374655049	chr13:90297010-90297011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs541356616	chr13:90297012-90297013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs111649028	chr13:90297041-90297042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs180710396	chr13:90297057-90297058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs376935853	chr13:90297081-90297082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs528569643	chr13:90297085-90297086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs117732079	chr13:90297135-90297136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs565033321	chr13:90297139-90297140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs578096283	chr13:90297157-90297158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs532353054	chr13:90297162-90297163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs569225103	chr13:90297197-90297198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs187191087	chr13:90297225-90297226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs569038419	chr13:90297239-90297240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs530027521	chr13:90297265-90297266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs192168639	chr13:90297305-90297306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs548071281	chr13:90297309-90297310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs533600637	chr13:90297398-90297399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs543535785	chr13:90297408-90297409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs200698801	chr13:90297449-90297450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs181784689	chr13:90297466-90297467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs570259402	chr13:90297511-90297512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs185797789	chr13:90297523-90297524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs370426691	chr13:90297688-90297689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs373619269	chr13:90297721-90297722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs73591582	chr13:90297755-90297756	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs74930256	chr13:90297792-90297793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs532150910	chr13:90297830-90297831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs200709339	chr13:90297843-90297844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs113722120	chr13:90297848-90297849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs386380145	chr13:90297849-90297850	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs368574628	chr13:90297850-90297851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs10636539	chr13:90297851-90297852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs143963089	chr13:90297861-90297862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs368061506	chr13:90297872-90297873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs375552565	chr13:90297885-90297886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs113186427	chr13:90297897-90297898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs200545651	chr13:90297936-90297937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs36111694	chr13:90297940-90297941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs79865350	chr13:90297941-90297942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs56380335	chr13:90297942-90297943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Burkitt''s lymphoma	20823134	CNVD
Osteosarcoma	21215367	CNVD

Chromatin state (count:133 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90296600-90298800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:90298800-90300000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:90300000-90301600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:90300400-90303800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:90306000-90306600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:90312000-90313400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr13:90312800-90313600	Enhancers	HMEC	breast
8	chr13:90313400-90314200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr13:90314200-90314400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr13:90316200-90316600	Enhancers	Gastric	stomach
11	chr13:90321200-90321600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:90321200-90321800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr13:90321600-90323000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:90322600-90323600	Enhancers	HUVEC	blood vessel
15	chr13:90323000-90323400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr13:90323000-90323400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:90323000-90323600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr13:90323600-90324800	Weak transcription	HUVEC	blood vessel
19	chr13:90327800-90328000	Enhancers	Gastric	stomach
20	chr13:90327800-90328000	Enhancers	Spleen	Spleen
21	chr13:90328000-90329200	Weak transcription	HUVEC	blood vessel
22	chr13:90329200-90329800	Enhancers	HUVEC	blood vessel
23	chr13:90336400-90336800	Enhancers	Fetal Heart	heart
24	chr13:90336800-90340800	Weak transcription	Fetal Heart	heart
25	chr13:90337000-90337600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr13:90337200-90337800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr13:90337600-90339000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:90339000-90339400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr13:90340000-90340400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr13:90340000-90341400	Enhancers	Brain Cingulate Gyrus	brain
31	chr13:90340600-90340800	Enhancers	Brain Substantia Nigra	brain
32	chr13:90340800-90341600	Active TSS	Brain Anterior Caudate	brain
33	chr13:90340800-90341600	Flanking Active TSS	Brain Substantia Nigra	brain
34	chr13:90340800-90341600	Enhancers	Fetal Heart	heart
35	chr13:90340800-90342200	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr13:90341000-90341200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr13:90341000-90341400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr13:90341000-90341600	Enhancers	Right Atrium	heart
39	chr13:90341000-90341600	Enhancers	Right Ventricle	heart
40	chr13:90341000-90341800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr13:90341000-90341800	Enhancers	Colon Smooth Muscle	Colon
42	chr13:90341000-90342400	Enhancers	Brain Angular Gyrus	brain
43	chr13:90341000-90342400	Enhancers	Brain Hippocampus Middle	brain
44	chr13:90341200-90341400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr13:90341200-90341600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr13:90341200-90341600	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr13:90341200-90341600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr13:90341200-90341600	Enhancers	Adipose Nuclei	Adipose
49	chr13:90341200-90341800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr13:90341200-90342000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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