Variant report

Variant	nsv900867
Chromosome Location	chr13:90338898-90432585
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:90418481..90420847-chr13:90437525..90440214,2	MCF-7	breast:
2	chr13:90347808..90348492-chr13:90905964..90906495,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-26	chr13:90351476-90351493	NONHSAT034635
2	lnc-SLITRK6-26	chr13:90376736-90376852	NONHSAT034635
3	lnc-SLITRK6-26	chr13:90341209-90342696	NONHSAT034635
4	lnc-SLITRK6-26	chr13:90343642-90343795	NONHSAT034635
5	lnc-SLITRK6-26	chr13:90353649-90353765	NONHSAT034635
6	lnc-SLITRK6-26	chr13:90361586-90361709	NONHSAT034635

No data

Extended variants
information (count: 2144 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:2144 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1007241	chr13:90338898-90338899	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs145407830	chr13:90338934-90338935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs575855064	chr13:90338937-90338938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs186299185	chr13:90338995-90338996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs554663164	chr13:90339015-90339016	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs572928691	chr13:90339033-90339034	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs540312563	chr13:90339038-90339039	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs565052946	chr13:90339054-90339055	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs149230002	chr13:90339067-90339068	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs369902670	chr13:90339077-90339078	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs143393792	chr13:90339087-90339088	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs373981758	chr13:90339106-90339107	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs76216537	chr13:90339136-90339137	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs377657435	chr13:90339203-90339204	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs137899065	chr13:90339204-90339205	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs142337752	chr13:90339225-90339226	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs561544671	chr13:90339286-90339287	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs191863201	chr13:90339287-90339288	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs117513538	chr13:90339386-90339387	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs371813387	chr13:90339403-90339404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs9522632	chr13:90339411-90339412	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs550883349	chr13:90339413-90339414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs373618164	chr13:90339514-90339515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs564169835	chr13:90339528-90339529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs569479119	chr13:90339533-90339534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs183311547	chr13:90339534-90339535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs555277118	chr13:90339548-90339549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs572867054	chr13:90339576-90339577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs548605052	chr13:90339583-90339584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs188313283	chr13:90339631-90339632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs561917503	chr13:90339637-90339638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs568348406	chr13:90339642-90339643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs191116611	chr13:90339671-90339672	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs576935665	chr13:90339691-90339692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs368545982	chr13:90339714-90339715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs544733925	chr13:90339729-90339730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs138570659	chr13:90339810-90339811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs554920152	chr13:90339854-90339855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs574606240	chr13:90339867-90339868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs182289193	chr13:90339873-90339874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs560469882	chr13:90339878-90339879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs115213501	chr13:90339907-90339908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs1409912	chr13:90339996-90339997	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs564109007	chr13:90340003-90340004	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs370364520	chr13:90340047-90340048	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs75648152	chr13:90340049-90340050	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs533146707	chr13:90340099-90340100	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs549875404	chr13:90340100-90340101	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs550264725	chr13:90340175-90340176	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs141260464	chr13:90340179-90340180	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Burkitt''s lymphoma	20823134	CNVD
Osteosarcoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90336800-90340800	Weak transcription	Fetal Heart	heart
2	chr13:90337600-90339000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:90339000-90339400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:90340000-90340400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:90340000-90341400	Enhancers	Brain Cingulate Gyrus	brain
6	chr13:90340600-90340800	Enhancers	Brain Substantia Nigra	brain
7	chr13:90340800-90341600	Active TSS	Brain Anterior Caudate	brain
8	chr13:90340800-90341600	Flanking Active TSS	Brain Substantia Nigra	brain
9	chr13:90340800-90341600	Enhancers	Fetal Heart	heart
10	chr13:90340800-90342200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr13:90341000-90341200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:90341000-90341400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr13:90341000-90341600	Enhancers	Right Atrium	heart
14	chr13:90341000-90341600	Enhancers	Right Ventricle	heart
15	chr13:90341000-90341800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr13:90341000-90341800	Enhancers	Colon Smooth Muscle	Colon
17	chr13:90341000-90342400	Enhancers	Brain Angular Gyrus	brain
18	chr13:90341000-90342400	Enhancers	Brain Hippocampus Middle	brain
19	chr13:90341200-90341400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:90341200-90341600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:90341200-90341600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr13:90341200-90341600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr13:90341200-90341600	Enhancers	Adipose Nuclei	Adipose
24	chr13:90341200-90341800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:90341200-90342000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr13:90341400-90341800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr13:90341400-90341800	Flanking Active TSS	Brain Cingulate Gyrus	brain
28	chr13:90341600-90341800	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr13:90341600-90342400	Enhancers	Brain Substantia Nigra	brain
30	chr13:90341800-90342400	Enhancers	Brain Cingulate Gyrus	brain
31	chr13:90341800-90342600	Enhancers	Brain Anterior Caudate	brain
32	chr13:90342400-90346800	Weak transcription	Brain Hippocampus Middle	brain
33	chr13:90342400-90347600	Weak transcription	Brain Substantia Nigra	brain
34	chr13:90342600-90347600	Weak transcription	Brain Anterior Caudate	brain
35	chr13:90345600-90345800	Enhancers	HUVEC	blood vessel
36	chr13:90346800-90348000	Enhancers	Brain Hippocampus Middle	brain
37	chr13:90347400-90348000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr13:90347600-90348000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:90347600-90348000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr13:90347600-90348000	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr13:90347600-90348000	Enhancers	Brain Anterior Caudate	brain
42	chr13:90347600-90348000	Enhancers	Brain Substantia Nigra	brain
43	chr13:90347600-90348000	Enhancers	Fetal Muscle Leg	muscle
44	chr13:90347600-90348000	Enhancers	HUVEC	blood vessel
45	chr13:90347800-90348200	Enhancers	A549	lung
46	chr13:90361800-90362400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr13:90375600-90389600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr13:90378400-90379800	Enhancers	HMEC	breast
49	chr13:90378800-90379200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr13:90379000-90379800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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