Variant report

Variant	nsv900874
Chromosome Location	chr13:90707864-90754699
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:90744066..90745790-chr13:90748572..90750382,2	K562	blood:
2	chr13:90686920..90689377-chr13:90707957..90709473,2	K562	blood:
3	chr13:90687289..90689665-chr13:90743498..90745958,2	K562	blood:
4	chr13:90716505..90718988-chr13:90722159..90724342,2	K562	blood:
5	chr13:90703576..90708342-chr13:90709128..90714242,5	K562	blood:
6	chr13:90750086..90752997-chr13:90754100..90756762,5	K562	blood:
7	chr13:90717488..90719732-chr13:90722608..90724342,2	K562	blood:
8	chr13:90716984..90718514-chr13:90738626..90741620,2	K562	blood:
9	chr13:90706547..90709956-chr13:90713211..90716180,4	K562	blood:
10	chr13:90720137..90722598-chr13:90723221..90725922,2	K562	blood:
11	chr13:90706547..90709956-chr13:90713211..90716180,4	K562	blood:
12	chr13:90716505..90718988-chr13:90722159..90724342,2	K562	blood:
13	chr13:90744066..90745790-chr13:90748572..90750382,2	K562	blood:
14	chr13:90703576..90708342-chr13:90709128..90714242,5	K562	blood:
15	chr13:90716984..90718514-chr13:90738626..90741620,2	K562	blood:
16	chr13:90717488..90719732-chr13:90722608..90724342,2	K562	blood:
17	chr13:90750510..90752083-chr13:90755150..90756762,2	K562	blood:
18	chr13:90720137..90722598-chr13:90723221..90725922,2	K562	blood:
19	chr13:90750086..90752997-chr13:90754100..90756762,5	K562	blood:
20	chr13:90719627..90722250-chr13:92007081..92008697,2	K562	blood:
21	chr13:90727215..90729377-chr13:90823351..90825843,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCT-10	chr13:90731381-90731516	ENSG00000261446.1
2	lnc-DCT-10	chr13:90731381-90731516	NONHSAT034642
3	lnc-DCT-10	chr13:90712501-90712866	NONHSAT034642
4	lnc-DCT-10	chr13:90712506-90712866	ENSG00000261446.1
5	lnc-DCT-10	chr13:90718982-90719064	NONHSAT034642
6	lnc-DCT-10	chr13:90718982-90719064	ENSG00000261446.1

No data

Extended variants
information (count: 416 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:416 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2805684	chr13:90712517-90712518	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs555447293	chr13:90712564-90712565	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs184387519	chr13:90712571-90712572	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs17722377	chr13:90712610-90712611	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs550986224	chr13:90712622-90712623	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs9555974	chr13:90712629-90712630	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs565272113	chr13:90712642-90712643	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs187223490	chr13:90712645-90712646	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs575875887	chr13:90712686-90712687	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs572619085	chr13:90712692-90712693	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs9555975	chr13:90712739-90712740	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs113533011	chr13:90712744-90712745	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs13378710	chr13:90712833-90712834	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs557262846	chr13:90712842-90712843	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs34989118	chr13:90712843-90712844	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs200802122	chr13:90712859-90712860	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs527692247	chr13:90717202-90717203	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs8001126	chr13:90717273-90717274	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs570507143	chr13:90717274-90717275	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs537975513	chr13:90717278-90717279	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs549849707	chr13:90717281-90717282	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs567931462	chr13:90717316-90717317	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs187767418	chr13:90717335-90717336	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs554041251	chr13:90717395-90717396	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs148726062	chr13:90717402-90717403	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs543685864	chr13:90717458-90717459	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs557517116	chr13:90717461-90717462	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs576086910	chr13:90717476-90717477	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs543556482	chr13:90717491-90717492	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs34160857	chr13:90717533-90717534	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs386380164	chr13:90717534-90717535	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs373453301	chr13:90717535-90717536	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs373230201	chr13:90717536-90717537	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs142261299	chr13:90717550-90717551	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs569060742	chr13:90717551-90717552	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs575089131	chr13:90717592-90717593	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs538117982	chr13:90717594-90717595	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs370203439	chr13:90717633-90717634	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs9588850	chr13:90717634-90717635	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs560724823	chr13:90717662-90717663	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs528021165	chr13:90717682-90717683	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs150863641	chr13:90717697-90717698	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs9583779	chr13:90717701-90717702	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs531566123	chr13:90717742-90717743	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs549888354	chr13:90717779-90717780	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs568171344	chr13:90717812-90717813	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs139607119	chr13:90717827-90717828	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs547316729	chr13:90717832-90717833	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs8001217	chr13:90717865-90717866	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs553897919	chr13:90717921-90717922	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Developmental delay	21147756	CNVD
Burkitt''s lymphoma	20823134	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90717200-90717400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr13:90717200-90718000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:90717400-90718800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr13:90718800-90719200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr13:90719200-90722000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:90720800-90721000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:90720800-90721200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:90720800-90721200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr13:90720800-90721200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:90721600-90724600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:90723200-90723800	Enhancers	HepG2	liver
12	chr13:90737200-90737600	Enhancers	NHDF-Ad	bronchial
13	chr13:90752200-90755400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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