Variant report

Variant	nsv900902
Chromosome Location	chr13:92884370-92942274
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 739 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:739 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs539415560	chr13:92884813-92884814	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs530388846	chr13:92884829-92884830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs573798838	chr13:92884834-92884835	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs542919085	chr13:92884837-92884838	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs556140293	chr13:92884868-92884869	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs187339322	chr13:92884871-92884872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs542157042	chr13:92884875-92884876	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs138668909	chr13:92884884-92884885	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs373509229	chr13:92884946-92884947	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs115509122	chr13:92884953-92884954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs140526068	chr13:92885027-92885028	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs560803018	chr13:92885040-92885041	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs10492503	chr13:92885097-92885098	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs142718749	chr13:92885110-92885111	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs577019829	chr13:92885117-92885118	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs147738049	chr13:92885119-92885120	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs147008577	chr13:92885131-92885132	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs562517516	chr13:92885153-92885154	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs531631327	chr13:92885186-92885187	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs548501286	chr13:92885233-92885234	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs561711489	chr13:92885250-92885251	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs367609660	chr13:92885281-92885282	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs191924521	chr13:92885332-92885333	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs547290703	chr13:92885402-92885403	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs570572401	chr13:92885404-92885405	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs539589597	chr13:92885458-92885459	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs371256576	chr13:92885579-92885580	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs534654311	chr13:92885632-92885633	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs372907645	chr13:92885651-92885652	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs549755047	chr13:92885653-92885654	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs569748687	chr13:92885688-92885689	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs7995221	chr13:92885713-92885714	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs555994974	chr13:92885800-92885801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs549586099	chr13:92892802-92892803	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs372364452	chr13:92892820-92892821	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs569750949	chr13:92892823-92892824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs146048061	chr13:92892825-92892826	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs554988550	chr13:92892826-92892827	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs538878135	chr13:92892838-92892839	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs7983541	chr13:92892844-92892845	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs533684152	chr13:92892858-92892859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs4773677	chr13:92892859-92892860	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs576166082	chr13:92892890-92892891	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs56708882	chr13:92892910-92892911	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs11323525	chr13:92892924-92892925	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs191909522	chr13:92892939-92892940	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs543616819	chr13:92892959-92892960	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs528821457	chr13:92899403-92899404	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs1411748	chr13:92899438-92899439	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs565636965	chr13:92899441-92899442	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Developmental delay	21147756	CNVD
Melanoma	20877625	CNVD
Colorectal cancer	21645411	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Developmental delay	20808231	CNVD
Obesity	20808231	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92884800-92885800	Enhancers	Duodenum Mucosa	Duodenum
2	chr13:92885400-92885600	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr13:92885400-92885800	Enhancers	Fetal Intestine Large	intestine
4	chr13:92892800-92893000	Enhancers	Ovary	ovary
5	chr13:92899400-92900000	Enhancers	Brain Hippocampus Middle	brain
6	chr13:92902400-92902800	Enhancers	Fetal Stomach	stomach
7	chr13:92902600-92904400	Enhancers	Fetal Lung	lung
8	chr13:92902800-92907000	Weak transcription	Fetal Stomach	stomach
9	chr13:92904000-92904400	Enhancers	Fetal Kidney	kidney
10	chr13:92904400-92906800	Weak transcription	Fetal Lung	lung
11	chr13:92906800-92907800	Enhancers	Fetal Lung	lung
12	chr13:92907000-92907600	Enhancers	Fetal Stomach	stomach
13	chr13:92907800-92911800	Weak transcription	Fetal Lung	lung
14	chr13:92908000-92909600	Enhancers	Adipose Nuclei	Adipose
15	chr13:92911800-92912000	Enhancers	Fetal Lung	lung
16	chr13:92912000-92912400	Weak transcription	Fetal Lung	lung
17	chr13:92912000-92912400	Enhancers	Ovary	ovary
18	chr13:92912000-92912800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr13:92912400-92913200	Enhancers	Fetal Lung	lung
20	chr13:92912800-92917600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr13:92914200-92915000	Enhancers	Colon Smooth Muscle	Colon
22	chr13:92917200-92918200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr13:92917600-92919000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr13:92917600-92919000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr13:92918000-92919000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr13:92918800-92919000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr13:92922400-92922800	Enhancers	Rectal Smooth Muscle	rectum
28	chr13:92933000-92933800	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr13:92933200-92933400	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr13:92933200-92933800	Active TSS	HUES6 Cell Line	embryonic stem cell

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