Variant report

Variant	nsv900908
Chromosome Location	chr13:93575720-93618766
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93617783..93619579-chr13:93620877..93623420,2	MCF-7	breast:
2	chr13:93606573..93607451-chr19:19517462..19518161,2	MCF-7	breast:

Extended variants
information (count: 137 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:137 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs566797216	chr13:93590431-93590432	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs539860445	chr13:93590448-93590449	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs187904618	chr13:93590471-93590472	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs114125597	chr13:93590478-93590479	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs552278754	chr13:93590486-93590487	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs534799015	chr13:93590505-93590506	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs562939849	chr13:93590524-93590525	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs112424318	chr13:93590565-93590566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs548862447	chr13:93590589-93590590	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs192687283	chr13:93590611-93590612	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs534154626	chr13:93590625-93590626	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs547830037	chr13:93590628-93590629	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs115249707	chr13:93590655-93590656	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs538852570	chr13:93590661-93590662	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs539547000	chr13:93590662-93590663	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs150017929	chr13:93590663-93590664	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs74782188	chr13:93590665-93590666	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs77448907	chr13:93590667-93590668	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs113023968	chr13:93590718-93590719	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs184865383	chr13:93590722-93590723	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs187704802	chr13:93590732-93590733	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs540168041	chr13:93590749-93590750	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs559698910	chr13:93590762-93590763	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs575787634	chr13:93590910-93590911	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs576821665	chr13:93590940-93590941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs112614064	chr13:93590986-93590987	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs192637302	chr13:93591051-93591052	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs570783564	chr13:93591060-93591061	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs545573815	chr13:93591113-93591114	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs573283853	chr13:93591123-93591124	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs184859270	chr13:93591188-93591189	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs531765569	chr13:93591242-93591243	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs145185438	chr13:93591253-93591254	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs562335626	chr13:93591254-93591255	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs374082405	chr13:93591256-93591257	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs527975330	chr13:93591264-93591265	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs548155313	chr13:93591273-93591274	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs570745790	chr13:93591277-93591278	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs543196654	chr13:93591281-93591282	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs539829283	chr13:93591286-93591287	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs148729127	chr13:93591297-93591298	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs189715274	chr13:93591320-93591321	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs573587768	chr13:93591339-93591340	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs542608529	chr13:93591346-93591347	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs537612672	chr13:93591350-93591351	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs181580492	chr13:93591361-93591362	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs112113491	chr13:93591366-93591367	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs554325227	chr13:93591377-93591378	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs117159343	chr13:93591379-93591380	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs77058000	chr13:93591398-93591399	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Developmental delay	21147756	CNVD
Cancer	20164920	CNVD
Melanoma	20877625	CNVD
Colorectal cancer	21645411	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93590400-93591200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:93590800-93591400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:93590800-93591800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:93591000-93591600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:93599800-93601000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:93600000-93600400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr13:93600000-93600600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:93600000-93600600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:93600000-93600600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr13:93600000-93600600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr13:93600200-93600600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr13:93600200-93600600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr13:93600200-93600600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr13:93603200-93603800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr13:93603400-93603800	Enhancers	Fetal Lung	lung
16	chr13:93618600-93619000	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links