Variant report

Variant	nsv900922
Chromosome Location	chr13:94105666-94281492
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:94173270..94175976-chr13:94179967..94182735,2	MCF-7	breast:
2	chr13:94234119..94234981-chr3:29063764..29064299,2	MCF-7	breast:
3	chr13:94115203..94116046-chr5:54736109..54737038,2	MCF-7	breast:
4	chr13:94151315..94153018-chr13:94160965..94162525,2	MCF-7	breast:
5	chr13:94130713..94132921-chr13:94134439..94135999,2	K562	blood:
6	chr13:94151315..94153018-chr13:94160965..94162525,2	MCF-7	breast:
7	chr13:94173270..94175976-chr13:94179967..94182735,2	MCF-7	breast:
8	chr13:94130713..94132921-chr13:94134439..94135999,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPC5-6	chr13:94163893-94166198	ucscGeneNc_uc001vmb_1
2	lnc-DCT-15	chr13:94150943-94150992	NONHSAT034712
3	lnc-DCT-15	chr13:94149949-94150144	NONHSAT034712
4	lnc-DCT-15	chr13:94151520-94153117	NONHSAT034712
5	lnc-GPC5-6	chr13:94162971-94163648	ucscGeneNc_uc001vmb_1

No data

Extended variants
information (count: 5703 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:5703 , 50 per page) page: 1 2 3 4 5 6 7 ... 115

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10508005	chr13:94105666-94105667	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs187806558	chr13:94105688-94105689	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs552453772	chr13:94105695-94105696	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs563236198	chr13:94105723-94105724	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs369247510	chr13:94105744-94105745	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs554007584	chr13:94105789-94105790	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs548590472	chr13:94105791-94105792	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs2590558	chr13:94105798-94105799	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs534146148	chr13:94105832-94105833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs2590557	chr13:94105881-94105882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs11841335	chr13:94105884-94105885	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs61964186	chr13:94105892-94105893	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs558471337	chr13:94105916-94105917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs569162484	chr13:94105930-94105931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs537734616	chr13:94105931-94105932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs2813620	chr13:94105937-94105938	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs191798090	chr13:94105951-94105952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs539797122	chr13:94105975-94105976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs144889247	chr13:94105983-94105984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs138669847	chr13:94105984-94105985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs370090659	chr13:94106031-94106032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs374881880	chr13:94106032-94106033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs546422476	chr13:94106033-94106034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs562917424	chr13:94106085-94106086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs9516235	chr13:94106090-94106091	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs542171986	chr13:94106097-94106098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs562337643	chr13:94106134-94106135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs182519360	chr13:94106146-94106147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs61964187	chr13:94106148-94106149	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs571005783	chr13:94106162-94106163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs533248290	chr13:94106166-94106167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs187514878	chr13:94106167-94106168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs551997773	chr13:94106180-94106181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs2999497	chr13:94106182-94106183	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs2999498	chr13:94106185-94106186	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs554445843	chr13:94106198-94106199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs141904226	chr13:94106204-94106205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs533582112	chr13:94106218-94106219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs113493618	chr13:94106223-94106224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs562571977	chr13:94106224-94106225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs140723036	chr13:94106245-94106246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs556187608	chr13:94106247-94106248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs111273693	chr13:94106255-94106256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs2999499	chr13:94106294-94106295	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs567588639	chr13:94106295-94106296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs542405278	chr13:94106332-94106333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs2999500	chr13:94106340-94106341	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs191926321	chr13:94106395-94106396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs541467236	chr13:94106404-94106405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs61964188	chr13:94106421-94106422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Developmental delay	21147756	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Breast cancer	17603634	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thyroid cancer	19087340	CNVD
abortions and stillbirths	19751515	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:775 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94104800-94105800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94105400-94107600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:94105800-94107800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:94106800-94109000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:94107000-94107600	Active TSS	Monocytes-CD14+_RO01746	blood
6	chr13:94107200-94107800	Active TSS	Fetal Stomach	stomach
7	chr13:94107600-94107800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
8	chr13:94107600-94109000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr13:94107800-94108200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr13:94108000-94108600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr13:94108200-94120400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr13:94109000-94109400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:94112000-94112400	Enhancers	Fetal Heart	heart
14	chr13:94112200-94112600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr13:94112400-94114000	Weak transcription	Fetal Heart	heart
16	chr13:94113800-94114200	Enhancers	Fetal Brain Male	brain
17	chr13:94114000-94114400	Enhancers	Fetal Heart	heart
18	chr13:94117800-94118000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr13:94117800-94119200	Enhancers	Fetal Lung	lung
20	chr13:94118000-94119600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr13:94118600-94119000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:94119600-94120200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr13:94120400-94120600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr13:94120600-94121600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:94121600-94123400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr13:94124600-94125400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr13:94124600-94126200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr13:94124800-94126200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
29	chr13:94125200-94125800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr13:94125400-94125800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:94125600-94126000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:94125600-94126200	Enhancers	Fetal Muscle Trunk	muscle
33	chr13:94125600-94127400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr13:94125800-94126000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr13:94125800-94126400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr13:94125800-94126800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr13:94125800-94126800	Enhancers	HSMMtube	muscle
38	chr13:94125800-94127200	Enhancers	HSMM	muscle
39	chr13:94125800-94127400	Enhancers	Ovary	ovary
40	chr13:94126000-94127000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr13:94126000-94128600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr13:94126200-94126600	Enhancers	Liver	Liver
43	chr13:94126200-94126600	Enhancers	Fetal Muscle Leg	muscle
44	chr13:94126200-94127000	Enhancers	A549	lung
45	chr13:94126200-94128400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr13:94126400-94126600	Enhancers	NH-A	brain
47	chr13:94126400-94126600	Enhancers	Osteobl	bone
48	chr13:94126400-94126800	Enhancers	Colon Smooth Muscle	Colon
49	chr13:94126400-94126800	Enhancers	HepG2	liver
50	chr13:94126400-94127000	Enhancers	Fetal Lung	lung

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