Variant report

Variant	nsv900924
Chromosome Location	chr13:94714981-94819307
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:94776684..94779420-chr13:94782314..94783872,2	MCF-7	breast:
2	chr13:94714803..94717263-chr13:94722478..94725269,2	MCF-7	breast:
3	chr13:94760843..94762945-chr13:94764814..94766586,2	K562	blood:
4	chr13:94806835..94809679-chr13:94815918..94817523,2	MCF-7	breast:
5	chr13:94802761..94804908-chr13:94816627..94818163,2	MCF-7	breast:
6	chr13:94760843..94762945-chr13:94764814..94766586,2	K562	blood:
7	chr13:94802761..94804908-chr13:94816627..94818163,2	MCF-7	breast:
8	chr13:94806835..94809679-chr13:94815918..94817523,2	MCF-7	breast:
9	chr13:94714803..94717263-chr13:94722478..94725269,2	MCF-7	breast:
10	chr13:94776684..94779420-chr13:94782314..94783872,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCT-2	chr13:94806447-94806660	ENSG00000236520.2
2	lnc-GPR180-8	chr13:94751210-94761265	predAs_engstrom06_BU158437_1
3	lnc-DCT-13	chr13:94754352-94754402	NONHSAT034719
4	lnc-DCT-2	chr13:94806447-94806660	ENSG00000236520.1
5	lnc-DCT-13	chr13:94752706-94753670	NONHSAT034719

No data

Extended variants
information (count: 3878 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:3878 , 50 per page) page: 1 2 3 4 5 6 7 ... 78

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs943915	chr13:94714981-94714982	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs544941118	chr13:94715039-94715040	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs564821205	chr13:94715041-94715042	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs530646209	chr13:94715060-94715061	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs377251477	chr13:94715089-94715090	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs550329784	chr13:94715090-94715091	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs567366986	chr13:94715092-94715093	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs141203299	chr13:94715134-94715135	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs150756441	chr13:94715138-94715139	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs9561494	chr13:94715170-94715171	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs139099490	chr13:94715207-94715208	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs367550014	chr13:94715259-94715260	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs193030696	chr13:94715267-94715268	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs569550772	chr13:94715279-94715280	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs538463206	chr13:94715316-94715317	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs149866758	chr13:94715334-94715335	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs183646001	chr13:94715356-94715357	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs146426858	chr13:94715363-94715364	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs554229455	chr13:94715452-94715453	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs371855598	chr13:94715459-94715460	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs576861493	chr13:94715473-94715474	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs545770351	chr13:94715508-94715509	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs564855690	chr13:94715528-94715529	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs548866751	chr13:94715551-94715552	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs544403525	chr13:94715553-94715554	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs139962405	chr13:94715629-94715630	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs16949432	chr13:94715646-94715647	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs188147097	chr13:94715661-94715662	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs181330026	chr13:94715727-94715728	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs532175732	chr13:94715786-94715787	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs552174891	chr13:94715803-94715804	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs569587503	chr13:94715825-94715826	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs538501370	chr13:94715839-94715840	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs79163552	chr13:94715879-94715880	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs74111427	chr13:94715976-94715977	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs576446835	chr13:94715980-94715981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs548739071	chr13:94715996-94715997	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs372917326	chr13:94716025-94716026	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs143510308	chr13:94716099-94716100	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs35630633	chr13:94716127-94716128	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs554001367	chr13:94716140-94716141	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs568084855	chr13:94716141-94716142	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs561918433	chr13:94716169-94716170	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs185406824	chr13:94716172-94716173	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs375153222	chr13:94716202-94716203	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs534648869	chr13:94716261-94716262	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs539460694	chr13:94716284-94716285	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs574901876	chr13:94716305-94716306	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs114670710	chr13:94716308-94716309	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs575181270	chr13:94716316-94716317	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Breast cancer	17603634	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thyroid cancer	19087340	CNVD
abortions and stillbirths	19751515	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Osteosarcoma	21215367	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:574 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94707000-94718000	Weak transcription	Fetal Kidney	kidney
2	chr13:94707600-94716800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:94709200-94715200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:94711800-94715200	Weak transcription	Ovary	ovary
5	chr13:94711800-94715400	Weak transcription	Fetal Lung	lung
6	chr13:94711800-94715600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr13:94713400-94718200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:94713600-94716400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:94713600-94716400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:94714000-94715200	Weak transcription	Fetal Brain Male	brain
11	chr13:94714000-94715200	Weak transcription	HSMMtube	muscle
12	chr13:94714000-94715400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:94714000-94715600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:94714000-94715800	Weak transcription	NHLF	lung
15	chr13:94714000-94717400	Weak transcription	NH-A	brain
16	chr13:94714200-94715200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr13:94714200-94715200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr13:94714200-94715200	Weak transcription	Fetal Stomach	stomach
19	chr13:94714200-94715200	Weak transcription	Osteobl	bone
20	chr13:94714200-94715600	Weak transcription	HSMM	muscle
21	chr13:94714200-94716200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr13:94714400-94716000	Weak transcription	NHDF-Ad	bronchial
23	chr13:94714600-94715000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:94714600-94715000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:94714600-94715000	Weak transcription	Colon Smooth Muscle	Colon
26	chr13:94715000-94716200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr13:94715000-94716600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:94715000-94717600	Enhancers	Colon Smooth Muscle	Colon
29	chr13:94715200-94715600	Enhancers	Fetal Brain Male	brain
30	chr13:94715200-94716000	Enhancers	Osteobl	bone
31	chr13:94715200-94716200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr13:94715200-94716400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr13:94715200-94716400	Enhancers	Ovary	ovary
34	chr13:94715200-94717800	Enhancers	Fetal Stomach	stomach
35	chr13:94715200-94718000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr13:94715200-94718200	Enhancers	HSMMtube	muscle
37	chr13:94715400-94716200	Enhancers	Fetal Lung	lung
38	chr13:94715400-94716400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr13:94715400-94718000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr13:94715600-94715800	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr13:94715600-94716000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr13:94715600-94717400	Weak transcription	Fetal Brain Male	brain
43	chr13:94715600-94717800	Enhancers	HSMM	muscle
44	chr13:94715800-94716200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr13:94715800-94716400	Enhancers	NHLF	lung
46	chr13:94716000-94716400	Enhancers	NHDF-Ad	bronchial
47	chr13:94716000-94717400	Weak transcription	Osteobl	bone
48	chr13:94716200-94716400	Enhancers	Rectal Smooth Muscle	rectum
49	chr13:94716200-94717400	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr13:94716200-94717800	Weak transcription	Muscle Satellite Cultured Cells	--

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