Variant report

Variant	nsv900936
Chromosome Location	chr13:96697209-97032483
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1900)
CpG islands
(count:2260)
Chromatin interactive
region (count:53)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1900 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr13:96705446-96705959	HepG2	liver:	n/a	n/a
2	ARID3A	chr13:96710321-96710493	K562	blood:	n/a	n/a
3	ATF1	chr13:96704862-96705264	K562	blood:	n/a	n/a
4	ATF2	chr13:96705443-96705765	GM12878	blood:	n/a	n/a
5	ATF2	chr13:96704708-96705377	GM12878	blood:	n/a	n/a
6	ATF2	chr13:96704816-96705230	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr13:96704875-96705211	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF2	chr13:96704761-96705830	GM12878	blood:	n/a	n/a
9	ATF3	chr13:96705437-96705791	A549	lung:	n/a	n/a
10	BACH1	chr13:96705515-96705712	K562	blood:	n/a	n/a
11	BACH1	chr13:96705010-96706104	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr13:96761604-96761614	H1-hESC	embryonic stem cell:	n/a	n/a
13	BACH1	chr13:96761376-96761557	K562	blood:	n/a	n/a
14	BATF	chr13:96891281-96891533	GM12878	blood:	n/a	chr13:96891397-96891408 chr13:96891398-96891408
15	BCL11A	chr13:96891297-96891565	GM12878	blood:	n/a	chr13:96891400-96891409
16	BHLHE40	chr13:96705078-96705207	K562	blood:	n/a	n/a
17	BHLHE40	chr13:96808141-96808327	HepG2	liver:	n/a	n/a
18	BHLHE40	chr13:96704992-96706021	GM12878	blood:	n/a	n/a
19	BHLHE40	chr13:96705452-96705826	K562	blood:	n/a	n/a
20	BRCA1	chr13:96942285-96942294	H1-hESC	embryonic stem cell:	n/a	n/a
21	BRCA1	chr13:96705801-96705964	HepG2	liver:	n/a	n/a
22	BRCA1	chr13:96961633-96961819	H1-hESC	embryonic stem cell:	n/a	n/a
23	BRCA1	chr13:96704813-96705240	Hela-S3	cervix:	n/a	n/a
24	BRCA1	chr13:96705530-96705786	GM12878	blood:	n/a	n/a
25	BRCA1	chr13:96705964-96706299	H1-hESC	embryonic stem cell:	n/a	n/a
26	BRCA1	chr13:96705537-96706241	Hela-S3	cervix:	n/a	n/a
27	CBX3	chr13:96698869-96699225	K562	blood:	n/a	n/a
28	CBX3	chr13:96705479-96705930	K562	blood:	n/a	n/a
29	CBX3	chr13:96710079-96710563	HCT-116	colon:	n/a	n/a
30	CBX3	chr13:96760389-96760640	K562	blood:	n/a	n/a
31	CBX3	chr13:96760331-96760577	K562	blood:	n/a	n/a
32	CCNT2	chr13:96704993-96706008	K562	blood:	n/a	n/a
33	CEBPB	chr13:96873042-96873317	IMR90	lung:	n/a	chr13:96873164-96873177 chr13:96873166-96873175 chr13:96873165-96873176 chr13:96873166-96873175 chr13:96873166-96873175 chr13:96873164-96873177
34	CEBPB	chr13:96775311-96775312	HepG2	liver:	n/a	n/a
35	CEBPB	chr13:97001769-97001961	HepG2	liver:	n/a	n/a
36	CEBPB	chr13:96769285-96769451	A549	lung:	n/a	chr13:96769343-96769354 chr13:96769343-96769356
37	CEBPB	chr13:96978011-96978121	K562	blood:	n/a	chr13:96978062-96978075 chr13:96978063-96978074
38	CEBPB	chr13:96706948-96707142	H1-hESC	embryonic stem cell:	n/a	n/a
39	CEBPB	chr13:96873020-96873320	Hela-S3	cervix:	n/a	chr13:96873164-96873177 chr13:96873166-96873175 chr13:96873165-96873176 chr13:96873166-96873175 chr13:96873166-96873175 chr13:96873164-96873177
40	CEBPB	chr13:96868327-96868593	IMR90	lung:	n/a	chr13:96868448-96868459
41	CEBPB	chr13:96706843-96707164	K562	blood:	n/a	n/a
42	CEBPB	chr13:96743490-96743639	HepG2	liver:	n/a	n/a
43	CEBPB	chr13:96874473-96874764	HepG2	liver:	n/a	chr13:96874598-96874609
44	CEBPB	chr13:96704865-96705219	HepG2	liver:	n/a	n/a
45	CEBPB	chr13:96704839-96705613	A549	lung:	n/a	n/a
46	CEBPB	chr13:96977891-96978226	HepG2	liver:	n/a	chr13:96978062-96978075 chr13:96978063-96978074
47	CEBPB	chr13:96704867-96705229	K562	blood:	n/a	n/a
48	CEBPB	chr13:96719604-96719879	K562	blood:	n/a	chr13:96719701-96719712 chr13:96719699-96719712 chr13:96719699-96719712
49	CEBPB	chr13:96704761-96705977	Hela-S3	cervix:	n/a	n/a
50	CEBPB	chr13:96891210-96891594	MCF-7	breast:	n/a	n/a

(count:2260 , 50 per page) page: 1 2 3 4 5 6 7 ... 46

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:96743652-96743702	ECC-1	luminal epithelium:	n/a
2	chr13:96984133-96984183	HRPEpiC	eye:	n/a
3	chr13:96705786-96705836	T-47D	breast:	n/a
4	chr13:96743652-96743702	ECC-1	luminal epithelium:	n/a
5	chr13:96984133-96984183	HRPEpiC	eye:	n/a
6	chr13:96705786-96705836	T-47D	breast:	n/a
7	chr13:96705908-96705958	HL-60	blood:	n/a
8	chr13:96705395-96705445	SK-N-SH_RA	brain:	n/a
9	chr13:96743895-96743945	SK-N-SH_RA	brain:	n/a
10	chr13:96743754-96743804	HPAEpiC	pulmonary alveolar:	n/a
11	chr13:96742905-96742955	HCPEpiC	choroid plexus:	n/a
12	chr13:96743895-96743945	NHDF-neo	bronchial:	n/a
13	chr13:96742056-96742106	ECC-1	luminal epithelium:	n/a
14	chr13:96705395-96705445	GM12878	blood:	n/a
15	chr13:96707199-96707249	BE2_C	brain:	n/a
16	chr13:96742905-96742955	A549	lung:	n/a
17	chr13:96705853-96705903	HAEpiC	amniotic membrane:	n/a
18	chr13:96708764-96708814	HRCEpiC	kidney:	n/a
19	chr13:96705395-96705445	SKMC	muscle:	n/a
20	chr13:96949801-96949851	HMEC	breast:	n/a
21	chr13:96742317-96742367	AG04449	skin:	fetal
22	chr13:96706104-96706154	GM12878	blood:	n/a
23	chr13:96744126-96744176	NHBE	bronchial:	n/a
24	chr13:96742056-96742106	MCF-7	breast:	n/a
25	chr13:96742317-96742367	HPAEpiC	pulmonary alveolar:	n/a
26	chr13:96705395-96705445	HMEC	breast:	n/a
27	chr13:96741314-96741364	ECC-1	luminal epithelium:	n/a
28	chr13:96742056-96742106	AoSMC	blood vessel:	n/a
29	chr13:96706104-96706154	NT2-D1	testis:	n/a
30	chr13:96707199-96707249	ovcar-3	ovarian:	n/a
31	chr13:96743754-96743804	HNPCEpiC	eye:	n/a
32	chr13:96742905-96742955	HepG2	liver:	n/a
33	chr13:96706773-96706823	GM12878	blood:	n/a
34	chr13:96706104-96706154	IMR90	lung:	fetal
35	chr13:96743583-96743633	PrEC	prostate:	n/a
36	chr13:96741314-96741364	RPTEC	kidney:	n/a
37	chr13:96742056-96742106	RPTEC	kidney:	n/a
38	chr13:96743087-96743137	PFSK-1	brain:	n/a
39	chr13:96744161-96744211	K562	blood:	n/a
40	chr13:96984206-96984256	SKMC	muscle:	n/a
41	chr13:96742421-96742471	GM12891	blood:	n/a
42	chr13:96744161-96744211	HIPEpiC	eye:	n/a
43	chr13:96744289-96744339	MCF-7	breast:	n/a
44	chr13:96746650-96746700	AoSMC	blood vessel:	n/a
45	chr13:96743170-96743220	PrEC	prostate:	n/a
46	chr13:96742317-96742367	PFSK-1	brain:	n/a
47	chr13:96706104-96706154	HCF	heart:	n/a
48	chr13:96741314-96741364	GM12878	blood:	n/a
49	chr13:96705712-96705762	PFSK-1	brain:	n/a
50	chr13:96741314-96741364	U87	brain:	n/a

(count:53 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr13:96823185..96825377-chr2:192705947..192708625,2	MCF-7	breast:
2	chr13:96946178..96948064-chr13:96950276..96952772,2	K562	blood:
3	chr13:96705368..96706022-chr3:169482389..169482964,2	Hela-S3	cervix:
4	chr13:96704049..96706835-chr13:96874982..96877650,2	MCF-7	breast:
5	chr13:96822546..96824465-chr13:96826052..96828818,3	K562	blood:
6	chr13:96705694..96707387-chr13:96740919..96743720,3	MCF-7	breast:
7	chr13:96705350..96706193-chr15:72520336..72521147,2	Hela-S3	cervix:
8	chr13:96725464..96726444-chr6:144512474..144513042,2	MCF-7	breast:
9	chr13:96821572..96824428-chr13:96824997..96828818,3	K562	blood:
10	chr13:96742136..96745093-chr13:96745710..96749821,3	MCF-7	breast:
11	chr13:96865363..96867904-chr13:97451700..97453220,2	MCF-7	breast:
12	chr13:96837155..96838668-chr13:96842443..96845430,2	MCF-7	breast:
13	chr13:96704058..96705666-chr13:96708973..96710836,2	K562	blood:
14	chr13:96676638..96679476-chr13:96757318..96759037,2	MCF-7	breast:
15	chr13:96951968..96953789-chr17:79366532..79368897,2	MCF-7	breast:
16	chr13:96757574..96759639-chr13:96771275..96774077,2	MCF-7	breast:
17	chr13:96704511..96706638-chr13:96708531..96711999,4	MCF-7	breast:
18	chr13:96704560..96706140-chr13:96731564..96733725,2	MCF-7	breast:
19	chr1:16970980..16971545-chr13:96704941..96705920,2	HCT-116	colon:
20	chr13:96838474..96840209-chr13:96843029..96845173,2	K562	blood:
21	chr1:236958210..236959010-chr13:96705467..96706161,2	Hela-S3	cervix:
22	chr13:96838474..96840209-chr13:96843029..96845173,2	K562	blood:
23	chr13:96844015..96845659-chr13:96887223..96890032,2	MCF-7	breast:
24	chr13:96705694..96707387-chr13:96740919..96743720,3	MCF-7	breast:
25	chr13:96757306..96759865-chr13:96763569..96765220,2	MCF-7	breast:
26	chr13:96704503..96706630-chr13:96744009..96746380,2	MCF-7	breast:
27	chr13:96844015..96845659-chr13:96887223..96890032,2	MCF-7	breast:
28	chr13:96837155..96838668-chr13:96842443..96845430,2	MCF-7	breast:
29	chr13:96757306..96759865-chr13:96763569..96765220,2	MCF-7	breast:
30	chr13:96703695..96705658-chr13:96724041..96726709,2	K562	blood:
31	chr13:96741913..96744664-chr13:96755780..96757951,2	MCF-7	breast:
32	chr13:96933248..96934803-chr13:96938522..96940997,2	MCF-7	breast:
33	chr13:96793442..96793947-chr13:96881310..96882180,2	MCF-7	breast:
34	chr13:96704367..96706595-chr13:96710468..96713623,3	MCF-7	breast:
35	chr13:96732215..96734781-chr13:96740954..96743608,2	MCF-7	breast:
36	chr13:96705303..96706107-chr17:73775369..73775878,2	Hela-S3	cervix:
37	chr13:96933248..96934803-chr13:96938522..96940997,2	MCF-7	breast:
38	chr13:96793442..96793947-chr13:96881310..96882180,2	MCF-7	breast:
39	chr13:96746204..96748627-chr13:96759326..96761567,2	K562	blood:
40	chr13:96946178..96948064-chr13:96950276..96952772,2	K562	blood:
41	chr13:96711531..96713496-chr13:96738453..96740111,2	MCF-7	breast:
42	chr13:96757574..96759639-chr13:96771275..96774077,2	MCF-7	breast:
43	chr13:96951281..96952208-chr13:97448274..97448845,2	MCF-7	breast:
44	chr13:96746204..96748627-chr13:96759326..96761567,2	K562	blood:
45	chr13:96806648..96808895-chr13:96812833..96815729,2	K562	blood:
46	chr13:96812563..96814558-chr13:96818191..96820152,2	MCF-7	breast:
47	chr13:96705761..96707656-chr13:96724280..96725801,2	MCF-7	breast:
48	chr13:96812563..96814558-chr13:96818191..96820152,2	MCF-7	breast:
49	chr13:96711531..96713496-chr13:96738453..96740111,2	MCF-7	breast:
50	chr13:96705761..96707656-chr13:96724280..96725801,2	MCF-7	breast:

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DNAJC3-4	chr13:96998816-96999042	l_903_chr13:96989763-96999042_testes
2	lnc-DNAJC3-2	chr13:96805879-96806509	expReg_chr13_3550_+
3	lnc-UGGT2-1	chr13:96739248-96739285	NONHSAT034782
4	lnc-DNAJC3-3	chr13:96821799-96822099	NONHSAT034784
5	lnc-UGGT2-1	chr13:96737150-96737367	NONHSAT034782
6	lnc-DNAJC3-4	chr13:96989764-96989936	l_903_chr13:96989763-96999042_testes
7	lnc-UGGT2-1	chr13:96737151-96737367	XLOC_010699
8	lnc-UGGT2-1	chr13:96739249-96739285	XLOC_010699
9	lnc-DNAJC3-4	chr13:96991437-96991547	l_903_chr13:96989763-96999042_testes
10	lnc-UGGT2-2	chr13:96806821-96807071	uc_356_-

No data

Variant related genes	Relation type
UGGT2	TF binding region
HS6ST3	TF binding region
RN7SL164P	TF binding region
UGGT2	CpG island
HS6ST3	CpG island
RN7SL164P	CpG island
ENSG00000132475	chromatin interactions
ENSG00000270141	chromatin interactions
ENSG00000116984	chromatin interactions
ENSG00000103035	chromatin interactions
ENSG00000242614	chromatin interactions
ENSG00000185352	chromatin interactions
ENSG00000215908	chromatin interactions
ENSG00000067225	chromatin interactions
ENSG00000102595	chromatin interactions
ZNF280C	miRNA target sites
ATP2A2	miRNA target sites
ATP13A3	miRNA target sites
FSTL1	miRNA target sites

Extended variants
information (count: 9423 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:9423 , 50 per page) page: 1 2 3 4 5 6 7 ... 189

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12428062	chr13:96697209-96697210	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs117339173	chr13:96697227-96697228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs549472294	chr13:96697241-96697242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs183822883	chr13:96697243-96697244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs116737167	chr13:96697250-96697251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs187971083	chr13:96697262-96697263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs555538371	chr13:96697263-96697264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs558517646	chr13:96697324-96697325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs35685996	chr13:96697330-96697331	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs34816227	chr13:96697336-96697337	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
11	rs545338118	chr13:96697365-96697366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs191876332	chr13:96697366-96697367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs182243283	chr13:96697388-96697389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs574102743	chr13:96697390-96697391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs559284460	chr13:96697398-96697399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs138455145	chr13:96697439-96697440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs9584335	chr13:96697470-96697471	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs186862548	chr13:96697505-96697506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs142970103	chr13:96697509-96697510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs544597842	chr13:96697510-96697511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs565077989	chr13:96697514-96697515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs530845724	chr13:96697515-96697516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs113716620	chr13:96697541-96697542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs561160333	chr13:96697560-96697561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs529818124	chr13:96697562-96697563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs549533696	chr13:96697587-96697588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs559864566	chr13:96697626-96697627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs184937842	chr13:96697630-96697631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs551791825	chr13:96697684-96697685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs571509703	chr13:96697709-96697710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs537751990	chr13:96697710-96697711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs550963224	chr13:96697713-96697714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs567861137	chr13:96697731-96697732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs536429887	chr13:96697785-96697786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs552677437	chr13:96697802-96697803	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs572599376	chr13:96697820-96697821	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs538308376	chr13:96697872-96697873	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs558528641	chr13:96697896-96697897	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs575105661	chr13:96697917-96697918	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs544513394	chr13:96697948-96697949	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs374627675	chr13:96697962-96697963	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs546511238	chr13:96698011-96698012	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs146121171	chr13:96698054-96698055	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs190786092	chr13:96698087-96698088	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs148442005	chr13:96698091-96698092	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs371710282	chr13:96698112-96698113	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs61973970	chr13:96698120-96698121	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs528605009	chr13:96698141-96698142	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs551535749	chr13:96698145-96698146	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs141671563	chr13:96698206-96698207	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Rhabdomyosarcoma	17210683	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Breast cancer	17603634	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thyroid cancer	19087340	CNVD
abortions and stillbirths	19751515	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute myeloid leukemia	19651601	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Burkitt''s lymphoma	20823134	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21785460	CNVD

Chromatin state (count:1068 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96668600-96704400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr13:96669400-96704600	Weak transcription	Brain Anterior Caudate	brain
3	chr13:96673000-96698400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:96677600-96704200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr13:96678400-96704400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:96678600-96698800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr13:96683400-96704200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:96686800-96698400	Weak transcription	Fetal Lung	lung
9	chr13:96687000-96698800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:96687200-96698800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:96687200-96698800	Weak transcription	Ovary	ovary
12	chr13:96687200-96699000	Weak transcription	Left Ventricle	heart
13	chr13:96687200-96704600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr13:96687200-96705000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr13:96687400-96698800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr13:96687400-96699200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr13:96691600-96699000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr13:96693400-96697800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr13:96694000-96698800	Weak transcription	Aorta	Aorta
20	chr13:96694400-96698400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr13:96694400-96698800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:96694400-96698800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr13:96694400-96698800	Weak transcription	Fetal Intestine Small	intestine
24	chr13:96694400-96699400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr13:96694400-96704800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr13:96694400-96705000	Weak transcription	Gastric	stomach
27	chr13:96694600-96698400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr13:96694600-96698400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr13:96694600-96698800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr13:96695000-96698200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr13:96697800-96699400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr13:96698200-96699200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
33	chr13:96698400-96698800	ZNF genes & repeats	Fetal Lung	lung
34	chr13:96698400-96699200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
35	chr13:96698400-96699400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:96698400-96699600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
37	chr13:96698400-96699600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr13:96698800-96699000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
39	chr13:96698800-96699400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr13:96698800-96699400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr13:96698800-96699400	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr13:96698800-96699400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr13:96698800-96699400	ZNF genes & repeats	Aorta	Aorta
44	chr13:96698800-96699400	ZNF genes & repeats	Fetal Intestine Small	intestine
45	chr13:96698800-96699400	Strong transcription	Fetal Lung	lung
46	chr13:96698800-96699600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
47	chr13:96698800-96699600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr13:96698800-96699600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr13:96698800-96699600	ZNF genes & repeats	Ovary	ovary
50	chr13:96698800-96699800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links