Variant report

Variant	nsv901684
Chromosome Location	chr14:41082183-41277956
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:40886812..40887593-chr14:41183727..41184438,2	MCF-7	breast:
2	chr14:41080998..41082666-chr14:41082697..41084594,2	K562	blood:
3	chr14:41080998..41082666-chr14:41082697..41084594,2	K562	blood:
4	chr14:41113572..41115996-chr14:41117287..41119749,2	MCF-7	breast:
5	chr14:40886743..40887636-chr14:41183711..41184631,4	MCF-7	breast:
6	chr14:41113572..41115996-chr14:41117287..41119749,2	MCF-7	breast:
7	chr14:41158914..41160637-chr14:41160728..41163383,2	MCF-7	breast:
8	chr14:41158914..41160637-chr14:41160728..41163383,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRFN5-6	chr14:41277531-41277622	NONHSAT036561
2	lnc-LRFN5-6	chr14:41274653-41274721	NONHSAT036561
3	lnc-FBXO33-4	chr14:41127113-41127240	l_973_chr14:41126919-41143836_ovary
4	lnc-FBXO33-4	chr14:41126920-41126997	l_973_chr14:41126919-41143836_ovary
5	lnc-FBXO33-4	chr14:41143707-41144144	l_973_chr14:41126919-41143836_ovary
6	lnc-LRFN5-6	chr14:41237036-41237101	NONHSAT036561

No data

Extended variants
information (count: 3697 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:3697 , 50 per page) page: 1 2 3 4 5 6 7 ... 74

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2415628	chr14:41083007-41083008	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs4414395	chr14:41083060-41083061	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs148979694	chr14:41083065-41083066	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs4580070	chr14:41083069-41083070	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs117398788	chr14:41083197-41083198	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs188736352	chr14:41083200-41083201	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs571939310	chr14:41083201-41083202	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs540813941	chr14:41083244-41083245	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs561081387	chr14:41083247-41083248	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs370329486	chr14:41083252-41083253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs530981494	chr14:41083350-41083351	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs563151521	chr14:41083352-41083353	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs532114576	chr14:41083353-41083354	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs7155027	chr14:41083423-41083424	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs552129899	chr14:41083438-41083439	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs565560644	chr14:41083469-41083470	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs7155547	chr14:41083528-41083529	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs114327379	chr14:41083540-41083541	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs151091571	chr14:41083561-41083562	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs141071465	chr14:41083569-41083570	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs192783472	chr14:41083599-41083600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs569738278	chr14:41083630-41083631	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs7155430	chr14:41083661-41083662	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs182468901	chr14:41083680-41083681	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs572002546	chr14:41083699-41083700	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs534867991	chr14:41083825-41083826	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs554473883	chr14:41083829-41083830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs138998737	chr14:41083832-41083833	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs543172163	chr14:41083874-41083875	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs563373855	chr14:41083877-41083878	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs576947084	chr14:41083881-41083882	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs545805721	chr14:41083965-41083966	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs989419	chr14:41083985-41083986	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs527994734	chr14:41083992-41083993	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs548029476	chr14:41084017-41084018	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs376126245	chr14:41084018-41084019	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs397835490	chr14:41084042-41084043	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs76987401	chr14:41084043-41084044	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs397852459	chr14:41084044-41084045	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs568520695	chr14:41084099-41084100	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs550036433	chr14:41084132-41084133	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs112041327	chr14:41084135-41084136	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs187750639	chr14:41084157-41084158	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs376104040	chr14:41084183-41084184	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs113610963	chr14:41084190-41084191	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs565694669	chr14:41084261-41084262	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs568360483	chr14:41084303-41084304	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs566788877	chr14:41084325-41084326	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs17781107	chr14:41084334-41084335	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs373496572	chr14:41084387-41084388	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Colorectal cancer	16774939	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Chronic myeloid leukemia	20724749	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Wilms tumour	21544195	CNVD
Burkitt''s lymphoma	19759907	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21785460	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	21858162	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Thyroid cancer	19470727	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	23813976	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Immune disease	21076436	CNVD
Immune disease	21042300	CNVD
Neurodevelopmental disorder	22521361	CNVD
Renal cell carcinoma	18194544	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:157 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:41083000-41083600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:41083400-41088000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:41084200-41088000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr14:41084400-41088000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr14:41084400-41088200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr14:41084600-41085800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr14:41084800-41088200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr14:41085000-41088000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr14:41085400-41088000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:41085800-41086800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:41086800-41087000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr14:41086800-41088000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr14:41087600-41087800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr14:41088000-41089600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr14:41089600-41089800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr14:41094000-41094400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:41094600-41098600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr14:41097800-41098000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr14:41097800-41098200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr14:41098000-41098400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr14:41098000-41098400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr14:41098000-41098600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr14:41098200-41098400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr14:41098200-41099400	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr14:41098200-41099600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr14:41098200-41100400	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr14:41098400-41099000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:41098400-41099400	Active TSS	H9 Cell Line	embryonic stem cell
29	chr14:41098400-41099600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:41098400-41099800	Active TSS	K562	blood
31	chr14:41098400-41100400	Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr14:41098400-41100600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:41098600-41099400	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr14:41098600-41099600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr14:41098600-41099800	Active TSS	H1 Cell Line	embryonic stem cell
36	chr14:41098600-41099800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr14:41098600-41099800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr14:41098600-41099800	Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr14:41098600-41100400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:41098800-41099000	Enhancers	Placenta	Placenta
41	chr14:41098800-41099400	Active TSS	Right Ventricle	heart
42	chr14:41098800-41099400	Active TSS	Thymus	Thymus
43	chr14:41099000-41099400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:41099000-41099400	Flanking Active TSS	Placenta	Placenta
45	chr14:41099000-41099400	Active TSS	Pancreas	Pancrea
46	chr14:41099200-41099600	Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr14:41099400-41099600	Active TSS	Placenta	Placenta
48	chr14:41099400-41099800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr14:41099600-41099800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr14:41099600-41100000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links