Variant report

Variant	nsv901797
Chromosome Location	chr14:44236898-44319623
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:44248309..44251226-chr14:44260477..44263698,5	MCF-7	breast:
2	chr14:44251005..44253148-chr14:44254943..44257125,2	MCF-7	breast:
3	chr14:44232302..44233924-chr14:44251251..44254114,2	MCF-7	breast:
4	chr14:44116606..44118543-chr14:44247032..44249765,2	MCF-7	breast:
5	chr14:44233069..44235944-chr14:44237070..44239771,2	MCF-7	breast:
6	chr14:43972518..43973359-chr14:44264541..44265550,6	MCF-7	breast:
7	chr14:44249152..44254471-chr14:44260369..44263257,5	MCF-7	breast:
8	chr14:44239001..44241420-chr14:44242693..44244717,2	MCF-7	breast:
9	chr14:44118120..44120400-chr14:44236517..44238455,2	MCF-7	breast:
10	chr14:44118185..44120883-chr14:44261367..44263957,2	MCF-7	breast:
11	chr14:44262315..44264828-chr17:56707799..56709684,2	MCF-7	breast:
12	chr14:44250153..44252624-chr14:44254025..44256886,2	MCF-7	breast:
13	chr14:44254805..44256321-chr14:44256335..44258507,2	MCF-7	breast:
14	chr14:44238143..44240331-chr14:44246690..44250097,3	MCF-7	breast:
15	chr14:44233523..44237242-chr14:44247325..44250220,3	MCF-7	breast:
16	chr14:44249152..44254471-chr14:44260369..44263257,5	MCF-7	breast:
17	chr14:44250330..44252060-chr14:44369516..44373246,3	MCF-7	breast:
18	chr14:44118983..44120802-chr14:44250661..44252811,2	MCF-7	breast:
19	chr14:44239001..44241420-chr14:44242693..44244717,2	MCF-7	breast:
20	chr14:44250153..44252624-chr14:44254025..44256886,2	MCF-7	breast:
21	chr14:44248792..44250657-chr14:44368815..44370864,2	MCF-7	breast:
22	chr14:44118878..44120598-chr14:44261570..44263182,2	MCF-7	breast:
23	chr14:44232880..44235724-chr14:44246843..44251121,4	MCF-7	breast:
24	chr14:44251005..44253148-chr14:44254943..44257125,2	MCF-7	breast:
25	chr14:43485354..43487557-chr14:44249590..44251504,2	MCF-7	breast:
26	chr14:43380269..43381028-chr14:44264574..44265376,2	MCF-7	breast:
27	chr14:44252961..44256046-chr14:44259116..44261734,3	MCF-7	breast:
28	chr14:44238143..44240331-chr14:44246690..44250097,3	MCF-7	breast:
29	chr14:44233523..44237242-chr14:44247325..44250220,3	MCF-7	breast:
30	chr14:44264520..44265214-chr14:44367667..44368353,2	MCF-7	breast:
31	chr14:44254805..44256321-chr14:44256335..44258507,2	MCF-7	breast:
32	chr14:44252961..44256046-chr14:44259116..44261734,3	MCF-7	breast:
33	chr14:44302474..44305350-chr6:53571306..53573841,2	MCF-7	breast:
34	chr14:44248309..44251226-chr14:44260477..44263698,5	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf28-3	chr14:44270413-44270454	NONHSAT036601
2	lnc-C14orf28-3	chr14:44266689-44266858	NONHSAT036601
3	lnc-FSCB-9	chr14:44306948-44307084	l_976_chr14:44304204-44307081_thyroid
4	lnc-FSCB-9	chr14:44305172-44305287	l_976_chr14:44304204-44307081_thyroid
5	lnc-FSCB-9	chr14:44304205-44304400	l_976_chr14:44304204-44307081_thyroid
6	lnc-FSCB-9	chr14:44304444-44304588	l_976_chr14:44304204-44307081_thyroid

No data

Variant related genes	Relation type
ENSG00000212195	chromatin interactions

Extended variants
information (count: 1242 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:1242 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs368623984	chr14:44245852-44245853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs555256911	chr14:44245856-44245857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs573576834	chr14:44245903-44245904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs367786019	chr14:44245913-44245914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs182370836	chr14:44245930-44245931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs187963460	chr14:44245936-44245937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs192412736	chr14:44245956-44245957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs544267469	chr14:44245989-44245990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs562456917	chr14:44245992-44245993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs552083878	chr14:44246217-44246218	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs58097482	chr14:44246234-44246235	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs532417148	chr14:44246251-44246252	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs551013714	chr14:44246270-44246271	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs569256966	chr14:44246317-44246318	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs536791250	chr14:44246364-44246365	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs555191556	chr14:44246366-44246367	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs185056324	chr14:44246426-44246427	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs534473218	chr14:44246441-44246442	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs559009744	chr14:44246460-44246461	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs188992762	chr14:44246483-44246484	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs578161960	chr14:44246485-44246486	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs11157365	chr14:44246488-44246489	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs556175389	chr14:44246489-44246490	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs192340056	chr14:44246519-44246520	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs541560515	chr14:44246525-44246526	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs576581811	chr14:44246542-44246543	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs143722338	chr14:44246588-44246589	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs571933373	chr14:44246608-44246609	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs80265590	chr14:44246717-44246718	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs564232973	chr14:44246718-44246719	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs532491435	chr14:44246768-44246769	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs550697883	chr14:44246779-44246780	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs148074476	chr14:44246795-44246796	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs530201597	chr14:44246823-44246824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs548727115	chr14:44246864-44246865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs142347423	chr14:44246892-44246893	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs534409688	chr14:44246911-44246912	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs552792306	chr14:44247038-44247039	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs184140669	chr14:44247053-44247054	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs556322321	chr14:44247090-44247091	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs576256361	chr14:44247159-44247160	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs76704993	chr14:44247162-44247163	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs72676827	chr14:44247187-44247188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs555871992	chr14:44247235-44247236	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs377665234	chr14:44247325-44247326	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs574125412	chr14:44247446-44247447	Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs10150133	chr14:44247493-44247494	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs553468813	chr14:44247504-44247505	Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs77588402	chr14:44247550-44247551	Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs545683888	chr14:44247576-44247577	Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Colorectal cancer	16774939	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21785460	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	21858162	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Renal cell carcinoma	18194544	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myelofibrosis	22110671	CNVD
Melanoma	17363583	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Mortal	21835882	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:44245800-44246000	Weak transcription	HepG2	liver
2	chr14:44246200-44247400	Enhancers	HepG2	liver
3	chr14:44247400-44247800	Active TSS	HepG2	liver
4	chr14:44247600-44248200	Enhancers	Liver	Liver
5	chr14:44247800-44248400	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr14:44247800-44248400	Flanking Active TSS	HepG2	liver
7	chr14:44247800-44250000	Enhancers	Fetal Lung	lung
8	chr14:44248000-44248200	Enhancers	Stomach Mucosa	stomach
9	chr14:44248200-44248600	Active TSS	Rectal Mucosa Donor 31	rectum
10	chr14:44248200-44248800	Flanking Active TSS	Liver	Liver
11	chr14:44248200-44248800	Active TSS	A549	lung
12	chr14:44248400-44248800	Enhancers	Brain Substantia Nigra	brain
13	chr14:44248400-44248800	Enhancers	HepG2	liver
14	chr14:44248400-44249600	Enhancers	Fetal Heart	heart
15	chr14:44248600-44248800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
16	chr14:44248800-44249000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr14:44248800-44249600	Flanking Active TSS	HepG2	liver
18	chr14:44248800-44250200	Enhancers	Liver	Liver
19	chr14:44249400-44250200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr14:44249600-44250000	Enhancers	HepG2	liver
21	chr14:44249600-44250200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr14:44249600-44250200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr14:44249600-44250200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr14:44249600-44250200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr14:44249800-44250000	Enhancers	A549	lung
26	chr14:44249800-44250200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr14:44249800-44250200	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr14:44249800-44250200	Enhancers	Stomach Mucosa	stomach
29	chr14:44250000-44250600	Flanking Active TSS	HepG2	liver
30	chr14:44250200-44251200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr14:44250200-44255000	Weak transcription	Liver	Liver
32	chr14:44250200-44255200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr14:44250200-44262800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr14:44250600-44252200	Enhancers	HepG2	liver
35	chr14:44251200-44251400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr14:44255000-44256200	Enhancers	Liver	Liver
37	chr14:44255200-44255600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr14:44255200-44255800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr14:44255200-44256000	Enhancers	Fetal Muscle Trunk	muscle
40	chr14:44255200-44256200	Enhancers	Fetal Muscle Leg	muscle
41	chr14:44255400-44255800	Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr14:44255600-44256000	Enhancers	Psoas Muscle	Psoas
43	chr14:44255600-44258400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr14:44255800-44256000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr14:44255800-44256000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr14:44258400-44259000	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr14:44258600-44258800	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr14:44258600-44259000	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr14:44258800-44265400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr14:44259000-44261400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links