Variant report

Variant	nsv902029
Chromosome Location	chr14:66983034-67059231
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:67031416..67034033-chr14:67041598..67043348,2	MCF-7	breast:
2	chr14:66974018..66977412-chr14:66988835..66991120,3	MCF-7	breast:
3	chr14:66961968..66962547-chr14:67034432..67035854,3	MCF-7	breast:
4	chr14:66998273..67000951-chr14:67001181..67003201,2	MCF-7	breast:
5	chr14:67040072..67042253-chr14:67043564..67045326,2	MCF-7	breast:
6	chr14:67044325..67045049-chr8:77423954..77424779,2	MCF-7	breast:
7	chr14:66974208..66976195-chr14:67036443..67039003,2	MCF-7	breast:
8	chr14:67013560..67014177-chr16:87123245..87123883,2	MCF-7	breast:
9	chr14:67031416..67034033-chr14:67041598..67043348,2	MCF-7	breast:
10	chr14:67040072..67042253-chr14:67043564..67045326,2	MCF-7	breast:
11	chr14:66973828..66976621-chr14:66983168..66986678,3	MCF-7	breast:
12	chr14:66974791..66976543-chr14:66986687..66988455,2	MCF-7	breast:
13	chr14:66869840..66870579-chr14:67035035..67035552,2	MCF-7	breast:
14	chr14:66974103..66976751-chr14:66998338..67000349,2	MCF-7	breast:
15	chr14:66979852..66981724-chr14:67004183..67006810,2	K562	blood:
16	chr14:66998273..67000951-chr14:67001181..67003201,2	MCF-7	breast:
17	chr14:66975009..66976777-chr14:67006452..67008690,2	MCF-7	breast:
18	chr14:66972704..66976384-chr14:67000982..67004211,4	MCF-7	breast:
19	chr14:66974580..66976543-chr14:66983199..66985930,3	MCF-7	breast:
20	chr14:66973238..66976174-chr14:67016237..67019038,2	MCF-7	breast:
21	chr14:66972976..66974827-chr14:67023715..67025851,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTD-2014B16.3.1-5	chr14:66983554-66984402	ucscGeneNc_uc001xji_1

No data

Variant related genes	Relation type
ENSG00000171723	chromatin interactions
ENSG00000258561	chromatin interactions

Extended variants
information (count: 3260 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:3260 , 50 per page) page: 1 2 3 4 5 6 7 ... 66

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7159063	chr14:66983034-66983035	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs189725362	chr14:66983043-66983044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs72724569	chr14:66983095-66983096	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs557388193	chr14:66983126-66983127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs180904746	chr14:66983239-66983240	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs532444815	chr14:66983243-66983244	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs552352765	chr14:66983278-66983279	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs139984321	chr14:66983282-66983283	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs534734753	chr14:66983336-66983337	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs547952278	chr14:66983481-66983482	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs567796851	chr14:66983492-66983493	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs536684064	chr14:66983496-66983497	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs185911820	chr14:66983521-66983522	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs576374058	chr14:66983532-66983533	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs538914328	chr14:66983556-66983557	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
16	rs190393368	chr14:66983579-66983580	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
17	rs572513529	chr14:66983584-66983585	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
18	rs541535392	chr14:66983585-66983586	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
19	rs59171148	chr14:66983614-66983615	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
20	rs561395262	chr14:66983620-66983621	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
21	rs575748912	chr14:66983644-66983645	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
22	rs368963116	chr14:66983664-66983665	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
23	rs543885910	chr14:66983709-66983710	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
24	rs542663221	chr14:66983730-66983731	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
25	rs181863502	chr14:66983772-66983773	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
26	rs532446144	chr14:66983784-66983785	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
27	rs561385620	chr14:66983785-66983786	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
28	rs186018171	chr14:66983790-66983791	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
29	rs559524288	chr14:66983800-66983801	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
30	rs111301956	chr14:66983867-66983868	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
31	rs370963446	chr14:66983871-66983872	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
32	rs149826057	chr14:66983879-66983880	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
33	rs540806750	chr14:66983908-66983909	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
34	rs190432483	chr14:66983925-66983926	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
35	rs373828543	chr14:66983933-66983934	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
36	rs34792904	chr14:66983936-66983937	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
37	rs536744476	chr14:66984030-66984031	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
38	rs565164967	chr14:66984047-66984048	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
39	rs570071318	chr14:66984069-66984070	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
40	rs539334755	chr14:66984132-66984133	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
41	rs559978837	chr14:66984148-66984149	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
42	rs531597197	chr14:66984152-66984153	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
43	rs532664367	chr14:66984168-66984169	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
44	rs8006509	chr14:66984172-66984173	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
45	rs572676649	chr14:66984182-66984183	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
46	rs148538531	chr14:66984195-66984196	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
47	rs555199839	chr14:66984208-66984209	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
48	rs574991256	chr14:66984261-66984262	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
49	rs543897436	chr14:66984300-66984301	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
50	rs117882407	chr14:66984301-66984302	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Colorectal cancer	16272173	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Breast cancer	22032731	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	17603634	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Neuroblastoma	18923191	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Barrett''s syndrome	19417022	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	21364760	CNVD
Breast cancer	17133270	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Cancer	17440070	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Acute myeloid leukemia	21251322	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	22522925	CNVD
cataract	16735990	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:176 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66976600-66989800	Weak transcription	Aorta	Aorta
2	chr14:66976800-66983600	Weak transcription	Psoas Muscle	Psoas
3	chr14:66977600-66997200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:66979600-66985400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr14:66981800-66989600	Weak transcription	Liver	Liver
6	chr14:66983600-66983800	Enhancers	Psoas Muscle	Psoas
7	chr14:66985400-66985600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr14:66989600-66990800	Enhancers	Liver	Liver
9	chr14:66990800-66993200	Weak transcription	Liver	Liver
10	chr14:66993200-66993800	Enhancers	Liver	Liver
11	chr14:66995400-66995600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:66995400-66996600	Weak transcription	Fetal Stomach	stomach
13	chr14:66995600-67003600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:66996400-66997400	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr14:66996400-66998000	Enhancers	Left Ventricle	heart
16	chr14:66996600-66997200	Strong transcription	Fetal Stomach	stomach
17	chr14:66996600-66997600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:66996800-66997600	Enhancers	Gastric	stomach
19	chr14:66996800-66997600	Enhancers	GM12878-XiMat	blood
20	chr14:66997000-66997400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:66997000-66997600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:66997000-66997600	Enhancers	Esophagus	oesophagus
23	chr14:66997000-66997600	Enhancers	Right Ventricle	heart
24	chr14:66997000-66997800	Enhancers	NHEK	skin
25	chr14:66997200-66997600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:66997200-66997600	Enhancers	Lung	lung
27	chr14:66997200-66997800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:66997200-66998800	Weak transcription	Fetal Stomach	stomach
29	chr14:66997400-66997600	Enhancers	Spleen	Spleen
30	chr14:66997600-66997800	ZNF genes & repeats	GM12878-XiMat	blood
31	chr14:66997600-66998800	Weak transcription	Gastric	stomach
32	chr14:66997800-66998400	Weak transcription	GM12878-XiMat	blood
33	chr14:66997800-67014400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr14:66998000-67005800	Weak transcription	Left Ventricle	heart
35	chr14:66998000-67009600	Weak transcription	Psoas Muscle	Psoas
36	chr14:66998400-66998600	Enhancers	GM12878-XiMat	blood
37	chr14:66999000-66999200	Enhancers	Gastric	stomach
38	chr14:67002200-67002600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:67003600-67004000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr14:67004000-67005600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:67004400-67004600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr14:67004600-67004800	Enhancers	Right Atrium	heart
43	chr14:67004600-67005600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr14:67004800-67006800	Weak transcription	Right Atrium	heart
45	chr14:67005000-67006200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr14:67005200-67005800	Weak transcription	Liver	Liver
47	chr14:67005200-67005800	Enhancers	Dnd41	blood
48	chr14:67005400-67006000	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr14:67005400-67006200	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr14:67005600-67006000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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