Variant report

Variant	nsv902364
Chromosome Location	chr14:104730980-104780294
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:32)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:104736178..104738016-chr14:104740822..104743657,2	MCF-7	breast:
2	chr14:104723993..104726216-chr14:104758223..104760086,2	K562	blood:
3	chr14:104603795..104604545-chr14:104760161..104761480,5	MCF-7	breast:
4	chr14:104768093..104769693-chr14:104774112..104776117,2	MCF-7	breast:
5	chr14:104600334..104603089-chr14:104739484..104741726,2	MCF-7	breast:
6	chr14:104728779..104730960-chr14:104733381..104735361,2	K562	blood:
7	chr14:104773211..104774845-chr14:104779810..104781331,2	MCF-7	breast:
8	chr14:104756389..104758056-chr14:104758774..104761093,2	MCF-7	breast:
9	chr14:104623348..104624079-chr14:104760154..104761091,2	MCF-7	breast:
10	chr14:104747853..104750552-chr14:104755271..104758240,2	MCF-7	breast:
11	chr14:104769312..104770225-chr14:104779545..104780136,2	MCF-7	breast:
12	chr14:104762292..104764129-chr14:104770564..104772247,2	MCF-7	breast:
13	chr14:104747853..104750552-chr14:104755271..104758240,2	MCF-7	breast:
14	chr14:104769312..104770225-chr14:104779545..104780136,2	MCF-7	breast:
15	chr14:104768093..104769693-chr14:104774112..104776117,2	MCF-7	breast:
16	chr14:104603676..104604415-chr14:104760235..104760804,2	MCF-7	breast:
17	chr14:104750633..104755093-chr14:104756730..104760416,4	MCF-7	breast:
18	chr14:104575830..104578279-chr14:104758176..104760324,2	MCF-7	breast:
19	chr14:104746362..104748538-chr14:104754609..104757132,3	MCF-7	breast:
20	chr14:104746362..104748538-chr14:104754609..104757132,3	MCF-7	breast:
21	chr14:104773211..104774845-chr14:104779810..104781331,2	MCF-7	breast:
22	chr14:104651259..104651765-chr14:104760560..104761404,2	MCF-7	breast:
23	chr14:104760654..104761549-chr14:104836417..104836978,2	MCF-7	breast:
24	chr14:104617545..104619541-chr14:104760413..104762032,2	MCF-7	breast:
25	chr14:104750633..104755093-chr14:104756730..104760416,4	MCF-7	breast:
26	chr14:104756389..104758056-chr14:104758774..104761093,2	MCF-7	breast:
27	chr14:104747907..104749438-chr14:104962689..104965288,2	K562	blood:
28	chr14:104756422..104758689-chr14:104761247..104763793,2	MCF-7	breast:
29	chr14:104756422..104758689-chr14:104761247..104763793,2	MCF-7	breast:
30	chr14:104762292..104764129-chr14:104770564..104772247,2	MCF-7	breast:
31	chr14:104736178..104738016-chr14:104740822..104743657,2	MCF-7	breast:
32	chr14:104772029..104774740-chr14:104807798..104809607,2	K562	blood:

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf144-1	chr14:104741681-104741966	ENSG00000258913
2	lnc-RP11-614O9.3.1-3	chr14:104755476-104756432	NONHSAT040254
3	lnc-C14orf144-1	chr14:104754171-104754406	ENSG00000258913
4	lnc-C14orf144-1	chr14:104756355-104756432	NONHSAT040253
5	lnc-RP11-614O9.3.1-3	chr14:104753936-104755057	NONHSAT040254
6	lnc-C14orf144-1	chr14:104753823-104753890	NONHSAT040253
7	lnc-RP11-614O9.3.1-3	chr14:104755902-104756432	NONHSAT040255
8	lnc-C14orf144-1	chr14:104747468-104747661	NONHSAT040253
9	lnc-C14orf144-1	chr14:104753823-104753890	ENSG00000258913

No data

Variant related genes	Relation type
ENSG00000258748	chromatin interactions
ENSG00000166183	chromatin interactions

Extended variants
information (count: 2540 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:2540 , 50 per page) page: 1 2 3 4 5 6 7 ... 51

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7161071	chr14:104730980-104730981	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs545330438	chr14:104730988-104730989	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs73364252	chr14:104731064-104731065	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs530557201	chr14:104731065-104731066	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs567707931	chr14:104731068-104731069	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs544190640	chr14:104731074-104731075	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs560985536	chr14:104731085-104731086	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs529764629	chr14:104731097-104731098	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs75315543	chr14:104731108-104731109	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs566303776	chr14:104731124-104731125	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs142452137	chr14:104731145-104731146	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs535859555	chr14:104731148-104731149	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs546160164	chr14:104731151-104731152	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs377667726	chr14:104731162-104731163	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs552077816	chr14:104731165-104731166	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs566232734	chr14:104731190-104731191	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs146626513	chr14:104731205-104731206	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
18	rs558763662	chr14:104731239-104731240	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
19	rs139137565	chr14:104731240-104731241	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
20	rs375258721	chr14:104731299-104731300	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
21	rs567424980	chr14:104731361-104731362	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
22	rs536307520	chr14:104731365-104731366	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
23	rs553185037	chr14:104731366-104731367	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
24	rs573042668	chr14:104731405-104731406	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs538435896	chr14:104731417-104731418	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs558849375	chr14:104731432-104731433	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs575579625	chr14:104731489-104731490	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs544228621	chr14:104731518-104731519	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs73364254	chr14:104731521-104731522	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs114640590	chr14:104731531-104731532	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs540375834	chr14:104731552-104731553	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs563690208	chr14:104731558-104731559	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs559970498	chr14:104731559-104731560	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs528717671	chr14:104731564-104731565	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs192060012	chr14:104731601-104731602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs143042073	chr14:104731606-104731607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs531802248	chr14:104731624-104731625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs550571336	chr14:104731625-104731626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs567365796	chr14:104731642-104731643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs11160795	chr14:104731737-104731738	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs547101157	chr14:104731738-104731739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs183039129	chr14:104731794-104731795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs113377240	chr14:104731802-104731803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs372953083	chr14:104731813-104731814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs12878721	chr14:104731819-104731820	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs575616471	chr14:104731900-104731901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs538180513	chr14:104731916-104731917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs554899827	chr14:104731968-104731969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs141770992	chr14:104731987-104731988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs539830170	chr14:104732076-104732077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Neuroblastoma	18923191	CNVD
Barrett''s syndrome	19417022	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
cataract	16735990	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Developmental delay	21147756	CNVD
Cancer	20164920	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Biliary cancer	19435499	CNVD
Follicular lymphoma	20505157	CNVD
Acute lymphoblastic leukemia	20139093	CNVD
Hepatocellular carcinoma	16750200	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Glioblastoma multiforme	21922591	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Ovarian cancer	22174824	CNVD
Non-small cell lung cancer	18320023	CNVD
Melanoma	17363583	CNVD
Prostate cancer	18632612	CNVD
Congenital heart defect	22367666	CNVD
Developmental delay	22367666	CNVD
Genitourinary abnormalities	22367666	CNVD
Intellectual disability	22367666	CNVD
Microcephaly	22367666	CNVD
Muscularhypotonia	22367666	CNVD
Ocular coloboma	22367666	CNVD
Teratozoospermia	22367666	CNVD
Cervical cancer	21062161	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	21990379	CNVD
Breast cancer	16417655	CNVD
22q11 deletion syndrome	22511897	CNVD
Cancer	21129771	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Schizophrenia	21399695	CNVD
Intracranial ependymoma	16609018	CNVD
Lung adenocarcinoma	17086460	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
14q deletion syndrome	22511897	CNVD
Epilepsy	22083797	CNVD
Urothelial carcinoma	21177765	CNVD
Ovarian cancer	21720365	CNVD
Cancer	17440070	CNVD
Neurocytoma	17123091	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Central neurocytomas	17123091	CNVD
Acute lymphoblastic leukemia	17315016	CNVD
Lung cancer	17086460	CNVD
Mortal	21835882	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	17426248	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Ependymoma	20639864	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:482 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104719600-104733800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr14:104721600-104741400	Weak transcription	Fetal Lung	lung
3	chr14:104729200-104733000	Weak transcription	Right Atrium	heart
4	chr14:104729600-104732400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:104730800-104731600	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr14:104731200-104731400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:104731200-104731400	Enhancers	Fetal Muscle Leg	muscle
8	chr14:104731200-104731400	Bivalent Enhancer	Placenta	Placenta
9	chr14:104731400-104734200	Weak transcription	Fetal Muscle Leg	muscle
10	chr14:104731400-104736600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:104731600-104732400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:104731600-104735400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:104732400-104732800	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr14:104732400-104732800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr14:104732400-104733800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr14:104732400-104734000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:104733200-104733400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:104733600-104733800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:104733600-104733800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:104733600-104733800	Enhancers	Gastric	stomach
21	chr14:104733600-104734000	Bivalent Enhancer	Fetal Brain Male	brain
22	chr14:104733600-104734000	Enhancers	Spleen	Spleen
23	chr14:104733600-104734400	Bivalent Enhancer	Fetal Kidney	kidney
24	chr14:104733600-104734800	Enhancers	H1 Cell Line	embryonic stem cell
25	chr14:104733600-104735400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:104733800-104734000	Weak transcription	Thymus	Thymus
27	chr14:104733800-104734200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr14:104733800-104734400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr14:104733800-104735200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:104733800-104736000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr14:104734000-104734200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr14:104734000-104734400	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr14:104734000-104734400	Enhancers	Fetal Brain Male	brain
34	chr14:104734000-104734600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr14:104734000-104735400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr14:104734000-104735400	Weak transcription	Spleen	Spleen
37	chr14:104734200-104734400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr14:104734200-104734400	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr14:104734200-104734400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
40	chr14:104734200-104734600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
41	chr14:104734200-104734600	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr14:104734200-104734600	Enhancers	Fetal Muscle Leg	muscle
43	chr14:104734200-104734600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
44	chr14:104734200-104734800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr14:104734200-104734800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr14:104734200-104734800	Active TSS	Ovary	ovary
47	chr14:104734200-104734800	Enhancers	HUVEC	blood vessel
48	chr14:104734400-104734600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr14:104734400-104734600	Active TSS	Adipose Nuclei	Adipose
50	chr14:104734400-104734600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links