Variant report

Variant	nsv904189
Chromosome Location	chr15:45821158-46298458
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5160)
CpG islands
(count:3175)
Chromatin interactive
region (count:207)
LncRNA
region (count:27)
Mature miRNA
region (count: 0)
miRNA target
sites (count:5)

(count:5160 , 50 per page) page: 1 2 3 4 5 6 7 ... 104

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:45879904-45880178	K562	blood:	n/a	n/a
2	ARID3A	chr15:45933053-45934166	HepG2	liver:	n/a	n/a
3	ARID3A	chr15:45879254-45880307	HepG2	liver:	n/a	n/a
4	ARID3A	chr15:46086975-46088451	HepG2	liver:	n/a	n/a
5	ARID3A	chr15:46082589-46082879	HepG2	liver:	n/a	n/a
6	ARID3A	chr15:45875831-45876252	K562	blood:	n/a	n/a
7	ARID3A	chr15:46134435-46134727	HepG2	liver:	n/a	n/a
8	ARID3A	chr15:45906466-45906752	K562	blood:	n/a	n/a
9	ARID3A	chr15:45947081-45947129	K562	blood:	n/a	n/a
10	ARID3A	chr15:45878653-45879592	K562	blood:	n/a	n/a
11	ARID3A	chr15:45929838-45930064	HepG2	liver:	n/a	n/a
12	ARID3A	chr15:46094251-46095136	HepG2	liver:	n/a	chr15:46094263-46094279 chr15:46094262-46094278
13	ARID3A	chr15:45997778-45998162	HepG2	liver:	n/a	n/a
14	ARID3A	chr15:45940982-45941313	HepG2	liver:	n/a	n/a
15	ARID3A	chr15:45875066-45875081	K562	blood:	n/a	n/a
16	ARID3A	chr15:45927581-45927944	HepG2	liver:	n/a	n/a
17	ARID3A	chr15:46212078-46212462	HepG2	liver:	n/a	n/a
18	ARID3A	chr15:45841113-45841501	K562	blood:	n/a	n/a
19	ATF1	chr15:45876010-45876230	K562	blood:	n/a	n/a
20	ATF1	chr15:45929927-45930186	K562	blood:	n/a	n/a
21	ATF1	chr15:45841005-45841473	K562	blood:	n/a	n/a
22	ATF1	chr15:46006961-46007382	K562	blood:	n/a	n/a
23	ATF1	chr15:45869049-45869238	K562	blood:	n/a	n/a
24	ATF1	chr15:45879114-45880171	K562	blood:	n/a	n/a
25	ATF2	chr15:45879133-45879695	H1-hESC	embryonic stem cell:	n/a	n/a
26	ATF2	chr15:45929595-45930236	GM12878	blood:	n/a	n/a
27	ATF2	chr15:45878999-45880286	GM12878	blood:	n/a	chr15:45880074-45880085
28	ATF2	chr15:45898535-45898968	GM12878	blood:	n/a	n/a
29	ATF2	chr15:45997787-45998214	H1-hESC	embryonic stem cell:	n/a	n/a
30	ATF2	chr15:45879120-45879744	GM12878	blood:	n/a	n/a
31	ATF2	chr15:45879753-45880212	GM12878	blood:	n/a	chr15:45880074-45880085
32	ATF2	chr15:45879780-45880143	H1-hESC	embryonic stem cell:	n/a	chr15:45880074-45880085
33	ATF3	chr15:45933511-45933985	A549	lung:	n/a	n/a
34	ATF3	chr15:45933529-45934026	A549	lung:	n/a	n/a
35	ATF3	chr15:45841075-45841303	K562	blood:	n/a	n/a
36	ATF3	chr15:45997807-45998185	GM12878	blood:	n/a	n/a
37	ATF3	chr15:45997860-45998137	K562	blood:	n/a	n/a
38	ATF3	chr15:45997930-45998080	GM12878	blood:	n/a	n/a
39	ATF3	chr15:45997808-45998163	H1-hESC	embryonic stem cell:	n/a	n/a
40	ATF3	chr15:45997855-45998149	HepG2	liver:	n/a	n/a
41	ATF3	chr15:45997894-45998150	H1-hESC	embryonic stem cell:	n/a	n/a
42	ATF3	chr15:45879380-45879678	K562	blood:	n/a	n/a
43	BACH1	chr15:45926652-45927051	H1-hESC	embryonic stem cell:	n/a	n/a
44	BACH1	chr15:45879255-45879646	H1-hESC	embryonic stem cell:	n/a	n/a
45	BACH1	chr15:46021386-46021391	H1-hESC	embryonic stem cell:	n/a	n/a
46	BACH1	chr15:45877565-45877647	H1-hESC	embryonic stem cell:	n/a	n/a
47	BACH1	chr15:45927520-45927822	H1-hESC	embryonic stem cell:	n/a	n/a
48	BACH1	chr15:45996429-45996843	H1-hESC	embryonic stem cell:	n/a	n/a
49	BATF	chr15:45879259-45879688	GM12878	blood:	n/a	n/a
50	BATF	chr15:45898623-45898950	GM12878	blood:	n/a	chr15:45898757-45898768

(count:3175 , 50 per page) page: 1 2 3 4 5 6 7 ... 64

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:45879275-45879325	HUVEC	blood vessel:	n/a
2	chr15:45879196-45879246	HUVEC	blood vessel:	n/a
3	chr15:45879310-45879360	HCF	heart:	n/a
4	chr15:45879275-45879325	HUVEC	blood vessel:	n/a
5	chr15:45879196-45879246	HUVEC	blood vessel:	n/a
6	chr15:45879310-45879360	HCF	heart:	n/a
7	chr15:45929860-45929910	HCPEpiC	choroid plexus:	n/a
8	chr15:45927255-45927305	CMK	blood:	n/a
9	chr15:45993392-45993442	NH-A	brain:	n/a
10	chr15:45879196-45879246	NHDF-neo	bronchial:	n/a
11	chr15:45883463-45883513	HEK293	kidney:	embryo
12	chr15:45879310-45879360	SK-N-MC	brain:	n/a
13	chr15:45827540-45827590	AG10803	skin:	n/a
14	chr15:45879953-45880003	NB4	blood:	n/a
15	chr15:45996521-45996571	Hepatocyte	liver:	n/a
16	chr15:45924140-45924190	HEEpiC	esophagus:	n/a
17	chr15:46074087-46074137	SK-N-SH_RA	brain:	n/a
18	chr15:46006926-46006976	HCPEpiC	choroid plexus:	n/a
19	chr15:45879310-45879360	AG10803	skin:	n/a
20	chr15:45879818-45879868	HNPCEpiC	eye:	n/a
21	chr15:45927255-45927305	HRCEpiC	kidney:	n/a
22	chr15:46006849-46006899	HNPCEpiC	eye:	n/a
23	chr15:45927086-45927136	HPAEpiC	pulmonary alveolar:	n/a
24	chr15:45997251-45997301	SK-N-SH_RA	brain:	n/a
25	chr15:45997064-45997114	BJ	skin:	n/a
26	chr15:45879376-45879426	GM19239	blood:	n/a
27	chr15:45998079-45998129	LNCaP	prostate:	n/a
28	chr15:45997251-45997301	SK-N-MC	brain:	n/a
29	chr15:45996671-45996721	HEEpiC	esophagus:	n/a
30	chr15:45927554-45927604	SK-N-SH	brain:	n/a
31	chr15:45879564-45879614	SK-N-SH	brain:	n/a
32	chr15:45962135-45962185	SAEC	small airway:	n/a
33	chr15:45883463-45883513	ECC-1	luminal epithelium:	n/a
34	chr15:45952725-45952775	ECC-1	luminal epithelium:	n/a
35	chr15:45827540-45827590	MCF-7	breast:	n/a
36	chr15:45879953-45880003	HRPEpiC	eye:	n/a
37	chr15:46241811-46241861	HEEpiC	esophagus:	n/a
38	chr15:45879564-45879614	HAEpiC	amniotic membrane:	n/a
39	chr15:46000100-46000150	U87	brain:	n/a
40	chr15:45952725-45952775	HCF	heart:	n/a
41	chr15:45996671-45996721	HRPEpiC	eye:	n/a
42	chr15:45879376-45879426	PANC-1	pancreas:	n/a
43	chr15:45996671-45996721	SAEC	small airway:	n/a
44	chr15:45827540-45827590	GM19239	blood:	n/a
45	chr15:45879286-45879336	HAEpiC	amniotic membrane:	n/a
46	chr15:45879111-45879161	GM12891	blood:	n/a
47	chr15:45927554-45927604	H1-hESC	embryonic stem cell:	embryo
48	chr15:45924140-45924190	ECC-1	luminal epithelium:	n/a
49	chr15:45927921-45927971	HL-60	blood:	n/a
50	chr15:45993392-45993442	Jurkat	blood:	n/a

(count:207 , 50 per page) page: 1 2 3 4 5

No.	Distal block	Cell Line	Cell type
1	chr15:45875038..45876607-chr15:45877541..45880020,3	MCF-7	breast:
2	chr15:46059092..46061419-chr15:46070434..46072808,2	K562	blood:
3	chr15:45931549..45933106-chr15:45935286..45937099,2	K562	blood:
4	chr15:45933052..45935436-chr15:45937380..45939217,2	K562	blood:
5	chr15:45875078..45876854-chr15:45880097..45881754,2	MCF-7	breast:
6	chr15:45997964..45998598-chr15:46082040..46082768,2	K562	blood:
7	chr15:45864613..45866606-chr15:45876015..45877880,2	MCF-7	breast:
8	chr15:45926226..45928181-chr15:45978160..45980307,2	MCF-7	breast:
9	chr15:45911053..45913537-chr15:45922181..45923924,2	MCF-7	breast:
10	chr15:45934455..45936874-chr15:45938212..45940753,2	MCF-7	breast:
11	chr15:46186630..46188503-chr15:46193113..46195997,2	K562	blood:
12	chr15:45927082..45927744-chr20:42085983..42086651,2	Hela-S3	cervix:
13	chr15:45933273..45936098-chr15:48986463..48988127,2	MCF-7	breast:
14	chr15:45996926..45999638-chr15:45999983..46001605,2	K562	blood:
15	chr15:45845826..45847390-chr15:45854212..45857056,2	K562	blood:
16	chr15:46090728..46093093-chr15:46093477..46095355,2	K562	blood:
17	chr15:45887440..45889797-chr15:45894911..45896652,2	K562	blood:
18	chr15:45910835..45911364-chr15:45997627..45998448,2	MCF-7	breast:
19	chr15:45749404..45751481-chr15:45878948..45881186,2	K562	blood:
20	chr15:45750024..45753283-chr15:45906121..45908328,3	K562	blood:
21	chr15:45922262..45924603-chr15:45925302..45927277,3	MCF-7	breast:
22	chr15:46006507..46007343-chr15:46082324..46083236,6	MCF-7	breast:
23	chr15:45997593..45998183-chr15:48644388..48645304,2	K562	blood:
24	chr12:52444764..52445590-chr15:45878410..45879387,2	Hela-S3	cervix:
25	chr15:45927181..45929961-chr15:45939240..45941307,2	MCF-7	breast:
26	chr15:45842433..45843997-chr15:45848570..45850366,2	K562	blood:
27	chr15:45880183..45881884-chr15:45892162..45895627,3	K562	blood:
28	chr15:45908544..45910284-chr15:45911212..45913714,2	K562	blood:
29	chr15:45908544..45910284-chr15:45911212..45913714,2	K562	blood:
30	chr15:45749851..45751603-chr15:45905582..45907231,11	MCF-7	breast:
31	chr15:45926526..45927370-chr15:91260476..91261019,2	Hela-S3	cervix:
32	chr15:46262570..46266036-chr15:46268169..46271398,3	K562	blood:
33	chr15:45997964..45998598-chr15:46082040..46082768,2	K562	blood:
34	chr15:45884792..45886658-chr15:45905385..45908007,2	MCF-7	breast:
35	chr15:45931592..45934146-chr15:45938709..45942844,4	MCF-7	breast:
36	chr15:45936300..45938060-chr15:45941234..45942847,2	MCF-7	breast:
37	chr15:45864613..45866606-chr15:45876015..45877880,2	MCF-7	breast:
38	chr15:45859293..45861459-chr15:45876770..45879431,3	MCF-7	breast:
39	chr15:45884544..45886810-chr15:45890101..45892721,2	K562	blood:
40	chr15:45895546..45897491-chr15:45899127..45901340,2	K562	blood:
41	chr15:45997687..45998467-chr15:46006520..46007480,3	MCF-7	breast:
42	chr15:46147328..46148869-chr15:46153467..46155946,2	K562	blood:
43	chr15:45740795..45743926-chr15:45878461..45880935,3	MCF-7	breast:
44	chr15:45736069..45742318-chr15:45926037..45929619,6	MCF-7	breast:
45	chr15:45877258..45879705-chr15:45888357..45891193,3	MCF-7	breast:
46	chr15:45859930..45861832-chr15:45865060..45867024,2	K562	blood:
47	chr15:45750278..45751893-chr15:45902815..45904079,5	MCF-7	breast:
48	chr15:45877501..45879866-chr15:45923125..45926614,3	MCF-7	breast:
49	chr15:45862339..45865241-chr15:45879104..45881459,2	K562	blood:
50	chr1:68298679..68299399-chr15:45879104..45880006,2	Hela-S3	cervix:

(count:27 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf48-1	chr15:45847671-45848300	NONHSAT042267
2	lnc-SQRDL-1	chr15:46140779-46141083	ENSG00000259200.1
3	lnc-SQRDL-1	chr15:46083993-46084113	ENSG00000259200.1
4	lnc-C15orf48-1	chr15:45847688-45848928	NONHSAT042265
5	lnc-PLDN-1	chr15:45855014-45855075	ENSG00000259681.1
6	lnc-C15orf48-1	chr15:45847688-45848300	NONHSAT042266
7	lnc-PLDN-1	chr15:45851938-45852207	NONHSAT042274
8	lnc-C15orf48-1	chr15:45821932-45822075	NONHSAT042270
9	lnc-SQRDL-1	chr15:46068781-46068898	ENSG00000259200.1
10	lnc-C15orf48-1	chr15:45828283-45828407	NONHSAT042266
11	lnc-C15orf48-1	chr15:45847671-45848928	NONHSAT042264
12	lnc-C15orf48-1	chr15:45828283-45828407	NONHSAT042264
13	lnc-SQRDL-1	chr15:45997276-45997487	ENSG00000259200.1
14	lnc-C15orf48-1	chr15:45839278-45839365	NONHSAT042267
15	lnc-C15orf48-1	chr15:45839278-45839365	NONHSAT042264
16	lnc-SQRDL-1	chr15:45998864-45998968	ENSG00000259200.1
17	lnc-SQRDL-2	chr15:45988880-45989149	NONHSAT042282
18	lnc-C15orf48-1	chr15:45847671-45848098	NONHSAT042270
19	lnc-PLDN-1	chr15:45850988-45851006	NONHSAT042274
20	lnc-C15orf48-1	chr15:45847680-45848169	NONHSAT042272
21	lnc-SQRDL-1	chr15:46219027-46219179	ENSG00000259200.1
22	lnc-SQRDL-1	chr15:46220129-46220262	ENSG00000259200.1
23	lnc-PLDN-1	chr15:45850796-45851164	ENSG00000259681.1
24	lnc-SQRDL-1	chr15:45997393-45997487	ENSG00000259200.1
25	lnc-SQRDL-1	chr15:46140779-46140929	ENSG00000259200.1
26	lnc-SQRDL-1	chr15:46223146-46223267	ENSG00000259200.1
27	lnc-PLDN-2	chr15:45858974-45859272	NONHSAT042275

No data

(count:5 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	PLDN	hsa-miR-101-3p	chr15:45901308-45901314
2	PLDN	hsa-miR-124-3p	chr15:45898779-45898798
3	PLDN	hsa-miR-30b-5p	chr15:45900177-45900196
4	PLDN	hsa-miR-124-3p	chr15:45898791-45898798
5	PLDN	hsa-miR-101-3p	chr15:45901295-45901315

Variant related genes	Relation type
BLOC1S6	TF binding region
DPPA5P2	TF binding region
ENSG00000200419	TF binding region
HMGN2P46	TF binding region
ENSG00000260170	TF binding region
ENSG00000259681	TF binding region
SQRDL	TF binding region
ENSG00000259200	TF binding region
ENSG00000207516	TF binding region
BLOC1S6	CpG island
DPPA5P2	CpG island
ENSG00000200419	CpG island
HMGN2P46	CpG island
ENSG00000260170	CpG island
ENSG00000259681	CpG island
SQRDL	CpG island
ENSG00000259200	CpG island
ENSG00000207516	CpG island
ENSG00000154222	chromatin interactions
ENSG00000179362	chromatin interactions
ENSG00000197885	chromatin interactions
ENSG00000004776	chromatin interactions
ENSG00000197958	chromatin interactions
ENSG00000168404	chromatin interactions
ENSG00000104164	chromatin interactions
ENSG00000179818	chromatin interactions
ENSG00000233547	chromatin interactions
ENSG00000122566	chromatin interactions
ENSG00000200419	chromatin interactions
ENSG00000172380	chromatin interactions
ENSG00000167595	chromatin interactions
ENSG00000148175	chromatin interactions
ENSG00000104154	chromatin interactions
ENSG00000202538	chromatin interactions
ENSG00000178966	chromatin interactions
ENSG00000207516	chromatin interactions
ENSG00000081320	chromatin interactions
ENSG00000165119	chromatin interactions
ENSG00000124784	chromatin interactions
ENSG00000197299	chromatin interactions
ENSG00000171766	chromatin interactions
ENSG00000265181	chromatin interactions
ENSG00000260170	chromatin interactions
ENSG00000133639	chromatin interactions
ENSG00000237886	chromatin interactions
ENSG00000245904	chromatin interactions
ENSG00000174748	chromatin interactions
ENSG00000173473	chromatin interactions
ENSG00000260035	chromatin interactions
ENSG00000126070	chromatin interactions
ENSG00000124193	chromatin interactions
ENSG00000113387	chromatin interactions
ENSG00000259932	chromatin interactions
ENSG00000252285	chromatin interactions
ENSG00000259354	chromatin interactions
ENSG00000089280	chromatin interactions
ENSG00000201699	chromatin interactions
ENSG00000137767	chromatin interactions
ENSG00000172663	chromatin interactions
ENSG00000147403	chromatin interactions
ENSG00000259539	chromatin interactions
ENSG00000182500	chromatin interactions
ENSG00000138606	chromatin interactions
ENSG00000171763	chromatin interactions
ENSG00000123358	chromatin interactions
ENSG00000141446	chromatin interactions
ENSG00000085274	chromatin interactions
ENSG00000148400	chromatin interactions
ENSG00000259427	chromatin interactions
ENSG00000259200	chromatin interactions
ENSG00000259681	chromatin interactions
ENSG00000006062	chromatin interactions
ENSG00000166920	chromatin interactions
ENSG00000211519	chromatin interactions
ENSG00000070814	chromatin interactions
ENSG00000164304	chromatin interactions

Extended variants
information (count: 12430 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:12430 , 50 per page) page: 1 2 3 4 5 6 7 ... 249

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs8029246	chr15:45821158-45821159	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs181515843	chr15:45821161-45821162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs552157942	chr15:45821190-45821191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs529064924	chr15:45821245-45821246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs548660950	chr15:45821262-45821263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs565485792	chr15:45821321-45821322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs184051618	chr15:45821322-45821323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs528404939	chr15:45821323-45821324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs56010797	chr15:45821333-45821334	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs540096904	chr15:45821340-45821341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs188357410	chr15:45821423-45821424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs139130015	chr15:45821495-45821496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs12592529	chr15:45821512-45821513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs536094677	chr15:45821519-45821520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs180709255	chr15:45821568-45821569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs572598726	chr15:45821607-45821608	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs149933598	chr15:45821608-45821609	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs564479895	chr15:45821611-45821612	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs538599963	chr15:45821662-45821663	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs543663072	chr15:45821725-45821726	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs186453405	chr15:45821761-45821762	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs529052429	chr15:45821769-45821770	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs72711288	chr15:45821790-45821791	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs79506261	chr15:45821826-45821827	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs568857381	chr15:45821993-45821994	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
26	rs191222128	chr15:45822007-45822008	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
27	rs551208606	chr15:45822078-45822079	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs570174142	chr15:45822105-45822106	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs536998058	chr15:45822174-45822175	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs558930709	chr15:45822254-45822255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs146016290	chr15:45822270-45822271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs577691910	chr15:45822308-45822309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs550437618	chr15:45822320-45822321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs28552469	chr15:45822341-45822342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs28690897	chr15:45822342-45822343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs570406468	chr15:45822348-45822349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs34957722	chr15:45822354-45822355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs182051556	chr15:45822392-45822393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs556026944	chr15:45822427-45822428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs139966575	chr15:45822488-45822489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs143518605	chr15:45822491-45822492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs371266101	chr15:45822547-45822548	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs577963513	chr15:45822554-45822555	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs146658539	chr15:45822595-45822596	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs563221193	chr15:45822598-45822599	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs573634041	chr15:45822632-45822633	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs542528738	chr15:45822745-45822746	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs545240558	chr15:45822765-45822766	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs528276939	chr15:45822781-45822782	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs114692357	chr15:45822848-45822849	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	21129771	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21045282	CNVD
Breast cancer	22032731	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Melanoma	17363583	CNVD
Acute myeloid leukemia	19651601	CNVD
Marfan syndrome	17492313	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Pancreatic cancer	17952125	CNVD
Renal cell carcinoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Type 2 diabetes	21526130	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:5269 , 50 per page) page: 1 2 3 4 5 6 7 ... 106

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45815600-45825000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:45821600-45822200	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr15:45824200-45824400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:45824400-45826800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:45825000-45825200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:45825000-45825600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr15:45825000-45825600	Enhancers	Osteobl	bone
8	chr15:45825200-45825600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:45825200-45825600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:45825600-45827800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:45826400-45828400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:45826600-45826800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr15:45826600-45828400	Enhancers	Brain Anterior Caudate	brain
14	chr15:45826600-45828600	Enhancers	Brain Hippocampus Middle	brain
15	chr15:45826600-45828600	Enhancers	Brain Substantia Nigra	brain
16	chr15:45826800-45827800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:45826800-45827800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:45826800-45828200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr15:45826800-45828200	Enhancers	Brain Angular Gyrus	brain
20	chr15:45826800-45828600	Enhancers	Brain Cingulate Gyrus	brain
21	chr15:45827000-45827600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:45827200-45827600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:45827200-45828000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr15:45827400-45827800	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr15:45827400-45827800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:45827400-45827800	Enhancers	Duodenum Mucosa	Duodenum
27	chr15:45827400-45828000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr15:45827400-45828000	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr15:45827400-45828200	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr15:45827400-45828400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:45827600-45828200	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr15:45827800-45828000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr15:45827800-45828200	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr15:45827800-45828200	Enhancers	Fetal Lung	lung
35	chr15:45827800-45828400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:45827800-45828600	Enhancers	H1 Cell Line	embryonic stem cell
37	chr15:45827800-45831600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr15:45828000-45828200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:45828000-45831600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr15:45828200-45828400	Enhancers	Fetal Intestine Small	intestine
41	chr15:45828400-45829200	Weak transcription	Fetal Intestine Small	intestine
42	chr15:45829000-45829600	Enhancers	Fetal Stomach	stomach
43	chr15:45829000-45829600	Enhancers	K562	blood
44	chr15:45829200-45829400	Enhancers	Fetal Intestine Small	intestine
45	chr15:45829400-45829600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr15:45829400-45829600	Weak transcription	Fetal Intestine Small	intestine
47	chr15:45831600-45832200	Enhancers	Duodenum Mucosa	Duodenum
48	chr15:45831600-45832200	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr15:45831800-45832000	Enhancers	Fetal Intestine Small	intestine
50	chr15:45837800-45838400	Enhancers	HUES64 Cell Line	embryonic stem cell

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