Variant report
Variant | nsv904226 |
---|---|
Chromosome Location | chr15:53883244-54458310 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2732)
- CpG islands (count:1281)
- Chromatin interactive region (count:103)
- LncRNA region (count:19)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr15:54161924-54162226 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr15:54210484-54211065 | HepG2 | liver: | n/a | n/a |
3 | ARID3A | chr15:53947832-53947856 | HepG2 | liver: | n/a | n/a |
4 | ARID3A | chr15:54122872-54124852 | HepG2 | liver: | n/a | chr15:54124032-54124048 |
5 | ARID3A | chr15:54100317-54100664 | HepG2 | liver: | n/a | chr15:54100560-54100576 |
6 | ARID3A | chr15:54125132-54126029 | HepG2 | liver: | n/a | n/a |
7 | ARID3A | chr15:54009147-54009455 | HepG2 | liver: | n/a | n/a |
8 | ARID3A | chr15:53958161-53958371 | HepG2 | liver: | n/a | n/a |
9 | ARID3A | chr15:54136050-54137124 | HepG2 | liver: | n/a | n/a |
10 | ARID3A | chr15:54039721-54040249 | HepG2 | liver: | n/a | n/a |
11 | ATF2 | chr15:54442511-54442890 | GM12878 | blood: | n/a | n/a |
12 | BACH1 | chr15:53919759-53919802 | H1-hESC | embryonic stem cell: | n/a | n/a |
13 | BACH1 | chr15:54255417-54255420 | H1-hESC | embryonic stem cell: | n/a | n/a |
14 | BACH1 | chr15:54270443-54270603 | H1-hESC | embryonic stem cell: | n/a | n/a |
15 | BACH1 | chr15:54009217-54009423 | H1-hESC | embryonic stem cell: | n/a | n/a |
16 | BATF | chr15:54269100-54269383 | GM12878 | blood: | n/a | chr15:54269243-54269254 |
17 | BATF | chr15:54406133-54406329 | GM12878 | blood: | n/a | n/a |
18 | BATF | chr15:54442487-54442777 | GM12878 | blood: | n/a | n/a |
19 | BCL11A | chr15:54442387-54442927 | GM12878 | blood: | n/a | n/a |
20 | BCL11A | chr15:53917502-53917851 | H1-hESC | embryonic stem cell: | n/a | n/a |
21 | BCL11A | chr15:54442401-54442874 | GM12878 | blood: | n/a | n/a |
22 | BCL11A | chr15:53917634-53917829 | H1-hESC | embryonic stem cell: | n/a | n/a |
23 | BCL3 | chr15:54124056-54124467 | A549 | lung: | n/a | n/a |
24 | BCL3 | chr15:54123951-54124626 | A549 | lung: | n/a | n/a |
25 | BCL3 | chr15:54375816-54376051 | GM12878 | blood: | n/a | n/a |
26 | BCLAF1 | chr15:54442495-54442836 | GM12878 | blood: | n/a | n/a |
27 | BHLHE40 | chr15:54442366-54442968 | GM12878 | blood: | n/a | n/a |
28 | BHLHE40 | chr15:54358727-54358963 | GM12878 | blood: | n/a | n/a |
29 | BHLHE40 | chr15:54269065-54269371 | GM12878 | blood: | n/a | n/a |
30 | BHLHE40 | chr15:54123267-54123462 | HepG2 | liver: | n/a | n/a |
31 | BHLHE40 | chr15:54210429-54210824 | HepG2 | liver: | n/a | n/a |
32 | BHLHE40 | chr15:54267062-54267260 | GM12878 | blood: | n/a | n/a |
33 | BHLHE40 | chr15:54269170-54269333 | HepG2 | liver: | n/a | n/a |
34 | BHLHE40 | chr15:54375171-54375297 | GM12878 | blood: | n/a | n/a |
35 | BHLHE40 | chr15:54270556-54270727 | GM12878 | blood: | n/a | n/a |
36 | BRCA1 | chr15:54375208-54375398 | GM12878 | blood: | n/a | n/a |
37 | BRCA1 | chr15:54376140-54376218 | GM12878 | blood: | n/a | n/a |
38 | CEBPB | chr15:54327869-54328210 | HepG2 | liver: | n/a | chr15:54328041-54328052 |
39 | CEBPB | chr15:53919446-53919796 | A549 | lung: | n/a | chr15:53919623-53919634 |
40 | CEBPB | chr15:53928301-53928577 | HepG2 | liver: | n/a | chr15:53928415-53928426 |
41 | CEBPB | chr15:54213557-54213854 | HepG2 | liver: | n/a | chr15:54213726-54213735 chr15:54213726-54213735 chr15:54213726-54213735 chr15:54213724-54213737 |
42 | CEBPB | chr15:54202204-54202821 | MCF-7 | breast: | n/a | n/a |
43 | CEBPB | chr15:54197905-54198090 | HepG2 | liver: | n/a | chr15:54198031-54198042 |
44 | CEBPB | chr15:53919464-53919793 | HepG2 | liver: | n/a | chr15:53919623-53919634 |
45 | CEBPB | chr15:54123075-54123438 | HepG2 | liver: | n/a | chr15:54123338-54123349 |
46 | CEBPB | chr15:54123077-54123535 | A549 | lung: | n/a | chr15:54123338-54123349 |
47 | CEBPB | chr15:54442428-54442789 | IMR90 | lung: | n/a | n/a |
48 | CEBPB | chr15:54123961-54124628 | A549 | lung: | n/a | n/a |
49 | CEBPB | chr15:54335334-54335567 | HepG2 | liver: | n/a | chr15:54335407-54335420 chr15:54335407-54335420 |
50 | CEBPB | chr15:54250333-54250627 | Hela-S3 | cervix: | n/a | chr15:54250456-54250467 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:54270661-54270711 | Caco-2 | colon: | n/a |
2 | chr15:54304950-54305000 | SK-N-SH_RA | brain: | n/a |
3 | chr15:54051543-54051593 | HCM | heart: | n/a |
4 | chr15:54270661-54270711 | HRE | kidney: | n/a |
5 | chr15:54304778-54304828 | HAEpiC | amniotic membrane: | n/a |
6 | chr15:54051880-54051930 | Jurkat | blood: | n/a |
7 | chr15:54051239-54051289 | NT2-D1 | testis: | n/a |
8 | chr15:54052740-54052790 | AG09319 | gingival: | n/a |
9 | chr15:53910786-53910836 | HIPEpiC | eye: | n/a |
10 | chr15:54051901-54051951 | HL-60 | blood: | n/a |
11 | chr15:54051747-54051797 | HPAEpiC | pulmonary alveolar: | n/a |
12 | chr15:54270693-54270743 | AG09309 | skin: | n/a |
13 | chr15:54305206-54305256 | NHDF-neo | bronchial: | n/a |
14 | chr15:54055336-54055386 | GM12892 | blood: | n/a |
15 | chr15:54051901-54051951 | HRPEpiC | eye: | n/a |
16 | chr15:54304950-54305000 | SK-N-MC | brain: | n/a |
17 | chr15:53910786-53910836 | NH-A | brain: | n/a |
18 | chr15:54270693-54270743 | NHBE | bronchial: | n/a |
19 | chr15:54304778-54304828 | HRE | kidney: | n/a |
20 | chr15:54270947-54270997 | H1-hESC | embryonic stem cell: | embryo |
21 | chr15:54051901-54051951 | NH-A | brain: | n/a |
22 | chr15:54051543-54051593 | HAEpiC | amniotic membrane: | n/a |
23 | chr15:54304778-54304828 | HPAEpiC | pulmonary alveolar: | n/a |
24 | chr15:54052305-54052355 | RPTEC | kidney: | n/a |
25 | chr15:54049269-54049319 | HRCEpiC | kidney: | n/a |
26 | chr15:54055336-54055386 | ovcar-3 | ovarian: | n/a |
27 | chr15:54270557-54270607 | H1-hESC | embryonic stem cell: | embryo |
28 | chr15:54304950-54305000 | GM12892 | blood: | n/a |
29 | chr15:54049269-54049319 | K562 | blood: | n/a |
30 | chr15:54270661-54270711 | HUVEC | blood vessel: | n/a |
31 | chr15:54270557-54270607 | NB4 | blood: | n/a |
32 | chr15:54303927-54303977 | PFSK-1 | brain: | n/a |
33 | chr15:54051901-54051951 | SK-N-SH | brain: | n/a |
34 | chr15:54305206-54305256 | HCT-116 | colon: | n/a |
35 | chr15:54051239-54051289 | HIPEpiC | eye: | n/a |
36 | chr15:54304778-54304828 | GM06990 | blood: | n/a |
37 | chr15:54270693-54270743 | HRPEpiC | eye: | n/a |
38 | chr15:54055336-54055386 | HRE | kidney: | n/a |
39 | chr15:54270693-54270743 | BJ | skin: | n/a |
40 | chr15:54051747-54051797 | GM12891 | blood: | n/a |
41 | chr15:54271167-54271217 | RPTEC | kidney: | n/a |
42 | chr15:54124220-54124270 | H1-hESC | embryonic stem cell: | embryo |
43 | chr15:54049269-54049319 | HMEC | breast: | n/a |
44 | chr15:54304950-54305000 | T-47D | breast: | n/a |
45 | chr15:54049269-54049319 | HL-60 | blood: | n/a |
46 | chr15:54304778-54304828 | AoSMC | blood vessel: | n/a |
47 | chr15:54271167-54271217 | HL-60 | blood: | n/a |
48 | chr15:54051880-54051930 | HCF | heart: | n/a |
49 | chr15:53910786-53910836 | HRPEpiC | eye: | n/a |
50 | chr15:54055336-54055386 | HNPCEpiC | eye: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:54272577..54275424-chr15:54278207..54281083,2 | MCF-7 | breast: | |
2 | chr15:54113534..54116285-chr15:54122883..54124924,2 | MCF-7 | breast: | |
3 | chr15:54100067..54100735-chr15:54254841..54255517,2 | MCF-7 | breast: | |
4 | chr15:54034974..54037119-chr15:54039892..54041894,2 | MCF-7 | breast: | |
5 | chr15:54323697..54325296-chr15:54326702..54328336,2 | MCF-7 | breast: | |
6 | chr15:54307497..54309750-chr15:54313366..54316109,2 | K562 | blood: | |
7 | chr15:54050503..54054059-chr15:54055807..54059339,3 | MCF-7 | breast: | |
8 | chr15:54355045..54357590-chr15:54360185..54362187,2 | K562 | blood: | |
9 | chr15:54254706..54255764-chr15:54268796..54269699,6 | MCF-7 | breast: | |
10 | chr15:54164441..54166381-chr15:54167099..54170073,2 | MCF-7 | breast: | |
11 | chr15:54272577..54275424-chr15:54278207..54281083,2 | MCF-7 | breast: | |
12 | chr15:54428237..54428841-chr17:58520354..58521187,2 | MCF-7 | breast: | |
13 | chr15:54254977..54255831-chr15:54374717..54376166,5 | MCF-7 | breast: | |
14 | chr15:53072427..53073417-chr15:53957937..53958702,5 | MCF-7 | breast: | |
15 | chr15:54116856..54119680-chr15:54121215..54123914,2 | MCF-7 | breast: | |
16 | chr15:53676366..53677226-chr15:53947378..53948497,3 | MCF-7 | breast: | |
17 | chr15:53949957..53952071-chr15:53952352..53954072,2 | MCF-7 | breast: | |
18 | chr15:54374784..54375687-chr15:55460665..55461171,2 | MCF-7 | breast: | |
19 | chr15:54298660..54299394-chr15:54317743..54318508,2 | MCF-7 | breast: | |
20 | chr15:54254851..54255818-chr15:55460244..55461151,4 | MCF-7 | breast: | |
21 | chr15:54307497..54309750-chr15:54313366..54316109,2 | K562 | blood: | |
22 | chr15:53676762..53677326-chr15:53957733..53958557,2 | MCF-7 | breast: | |
23 | chr15:53920296..53922661-chr20:30119400..30121230,2 | MCF-7 | breast: | |
24 | chr15:54077990..54080956-chr15:54224851..54227112,2 | MCF-7 | breast: | |
25 | chr15:54207577..54208228-chr6:107100580..107101438,2 | MCF-7 | breast: | |
26 | chr15:54031475..54033401-chr15:54036496..54038741,2 | MCF-7 | breast: | |
27 | chr15:54254685..54255342-chr15:54375170..54375703,2 | MCF-7 | breast: | |
28 | chr15:53945998..53946891-chr15:54009249..54010202,2 | MCF-7 | breast: | |
29 | chr15:54121587..54123725-chr15:55486823..55489231,2 | MCF-7 | breast: | |
30 | chr15:54254908..54255701-chr15:55489106..55489772,3 | MCF-7 | breast: | |
31 | chr15:54077990..54080956-chr15:54224851..54227112,2 | MCF-7 | breast: | |
32 | chr15:53945998..53946891-chr15:54009249..54010202,2 | MCF-7 | breast: | |
33 | chr15:54375029..54375976-chr15:55400805..55401778,3 | MCF-7 | breast: | |
34 | chr15:54103478..54104302-chr15:54255062..54255563,2 | MCF-7 | breast: | |
35 | chr15:53984291..53986517-chr15:53987767..53990202,2 | MCF-7 | breast: | |
36 | chr15:54268767..54269686-chr15:54375127..54375711,4 | MCF-7 | breast: | |
37 | chr15:54166889..54167944-chr15:54254910..54255478,3 | MCF-7 | breast: | |
38 | chr15:54035259..54036883-chr15:54037384..54039611,2 | MCF-7 | breast: | |
39 | chr15:54025883..54029184-chr15:54031386..54034833,4 | MCF-7 | breast: | |
40 | chr15:54005385..54005905-chr17:46955446..46956217,3 | MCF-7 | breast: | |
41 | chr15:53958809..53961070-chr15:53966400..53969207,2 | MCF-7 | breast: | |
42 | chr15:54050503..54054059-chr15:54055807..54059339,3 | MCF-7 | breast: | |
43 | chr15:54254831..54255689-chr15:55400781..55401468,2 | MCF-7 | breast: | |
44 | chr15:54103533..54104375-chr15:54255060..54255801,2 | MCF-7 | breast: | |
45 | chr15:53072253..53073288-chr15:54008890..54009735,3 | MCF-7 | breast: | |
46 | chr15:54131232..54133067-chr15:54139996..54141988,3 | MCF-7 | breast: | |
47 | chr15:53926573..53928626-chr15:53929111..53931457,2 | K562 | blood: | |
48 | chr15:54316286..54318779-chr15:54320377..54322655,2 | MCF-7 | breast: | |
49 | chr15:54103533..54104375-chr15:54255060..54255801,2 | MCF-7 | breast: | |
50 | chr15:54322544..54324113-chr15:54326394..54329349,2 | K562 | blood: |
(count:19 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-WDR72-1 | chr15:54260199-54260347 | ENSG00000259669.1 |
2 | lnc-WDR72-1 | chr15:54247966-54248028 | ENSG00000259669.1 |
3 | lnc-WDR72-1 | chr15:54247966-54248028 | ENSG00000259669.1 |
4 | lnc-WDR72-1 | chr15:54240343-54240805 | ENSG00000259669.1 |
5 | lnc-WDR72-1 | chr15:54247966-54248028 | ENSG00000259669.1 |
6 | lnc-WDR72-1 | chr15:54267015-54267165 | ENSG00000259669.1 |
7 | lnc-WDR72-1 | chr15:54268965-54269105 | ENSG00000259669.1 |
8 | lnc-WDR72-1 | chr15:54260199-54260347 | ENSG00000259669.1 |
9 | lnc-WDR72-1 | chr15:54267015-54267206 | NONHSAT140240 |
10 | lnc-WDR72-1 | chr15:54240686-54240805 | ENSG00000259669.1 |
11 | lnc-WDR72-1 | chr15:54264872-54264981 | NONHSAT140240 |
12 | lnc-WDR72-1 | chr15:54240403-54240805 | ENSG00000259669.1 |
13 | lnc-WDR72-1 | chr15:54267015-54267136 | ENSG00000259669.1 |
14 | lnc-WDR72-3 | chr15:54129468-54129757 | NONHSAT043971 |
15 | lnc-WDR72-1 | chr15:54264867-54264981 | ENSG00000259669.1 |
16 | lnc-WDR72-1 | chr15:54264867-54264981 | ENSG00000259669.1 |
17 | lnc-WDR72-1 | chr15:54239821-54240033 | ENSG00000259669.1 |
18 | lnc-WDR72-1 | chr15:54267015-54267147 | ENSG00000259669.1 |
19 | lnc-WDR72-1 | chr15:54264867-54264981 | ENSG00000259669.1 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000259301 | TF binding region |
UNC13C | TF binding region |
RNU6-449P | TF binding region |
WDR72 | TF binding region |
ENSG00000259669 | TF binding region |
RNU2-53P | TF binding region |
ENSG00000259619 | TF binding region |
ENSG00000259301 | CpG island |
UNC13C | CpG island |
RNU6-449P | CpG island |
WDR72 | CpG island |
ENSG00000259669 | CpG island |
RNU2-53P | CpG island |
ENSG00000259619 | CpG island |
ENSG00000128833 | chromatin interactions |
ENSG00000166415 | chromatin interactions |
ENSG00000206641 | chromatin interactions |
ENSG00000259669 | chromatin interactions |
ENSG00000137876 | chromatin interactions |
ENSG00000169856 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs8039231 | chr15:53883244-53883245 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs74961571 | chr15:53883245-53883246 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
3 | rs374401969 | chr15:53883254-53883255 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
4 | rs144315486 | chr15:53883263-53883264 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
5 | rs8038018 | chr15:53883274-53883275 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
6 | rs536945449 | chr15:53883278-53883279 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
7 | rs557369918 | chr15:53883403-53883404 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
8 | rs577322491 | chr15:53883427-53883428 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
9 | rs543750469 | chr15:53883439-53883440 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
10 | rs189357129 | chr15:53883461-53883462 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
11 | rs34448494 | chr15:53883469-53883470 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
12 | rs565497497 | chr15:53883482-53883483 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
13 | rs181371962 | chr15:53883486-53883487 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
14 | rs34773458 | chr15:53883503-53883504 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
15 | rs541850196 | chr15:53883533-53883534 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
16 | rs4468551 | chr15:53883537-53883538 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
17 | rs575303383 | chr15:53883570-53883571 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
18 | rs544132700 | chr15:53883601-53883602 | Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
19 | rs565420771 | chr15:53883621-53883622 | Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
20 | rs186743197 | chr15:53883643-53883644 | Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
21 | rs531282141 | chr15:53883664-53883665 | Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
22 | rs532753360 | chr15:53883686-53883687 | Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
23 | rs112426070 | chr15:53883688-53883689 | Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
24 | rs561663664 | chr15:53883702-53883703 | Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
25 | rs114125258 | chr15:53883733-53883734 | Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
26 | rs559422742 | chr15:53883753-53883754 | Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
27 | rs564761018 | chr15:53883768-53883769 | Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
28 | rs531981524 | chr15:53883776-53883777 | Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
29 | rs551725128 | chr15:53883807-53883808 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs565451080 | chr15:53883815-53883816 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs192033987 | chr15:53883854-53883855 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs530177488 | chr15:53883855-53883856 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs7183536 | chr15:53883860-53883861 | Weak transcription Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
34 | rs374531870 | chr15:53883883-53883884 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs140360638 | chr15:53883892-53883893 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs398043082 | chr15:53883910-53883911 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs7183683 | chr15:53883926-53883927 | Weak transcription Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
38 | rs537212152 | chr15:53883928-53883929 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs148747245 | chr15:53883971-53883972 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs74017471 | chr15:53883976-53883977 | Weak transcription Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
41 | rs150864004 | chr15:53883998-53883999 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs539858460 | chr15:53884041-53884042 | Weak transcription Genic enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs553387620 | chr15:53884130-53884131 | Weak transcription Genic enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs182911529 | chr15:53884140-53884141 | Weak transcription Genic enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs141451829 | chr15:53884171-53884172 | Weak transcription Genic enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs1906439 | chr15:53884183-53884184 | Weak transcription Genic enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
47 | rs570620869 | chr15:53884202-53884203 | Weak transcription Enhancers Genic enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs575758111 | chr15:53884235-53884236 | Weak transcription Enhancers Genic enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs544742225 | chr15:53884310-53884311 | Weak transcription Enhancers Genic enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs79332930 | chr15:53884379-53884380 | Weak transcription Enhancers Genic enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Ewing''s sarcoma | 21437220 | CNVD |
Schizophrenia | 19415332 | CNVD |
Breast cancer | 22522925 | CNVD |
Autism | 22495311 | CNVD |
Wilms tumour | 21544195 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
cataract | 16735990 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Medulloblastoma | 21979893 | CNVD |
spastic paraplegia with thinning of corpus callosum | 19105190 | CNVD |
Schizophrenia | 21324950 | CNVD |
Astrocytoma | 17387387 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Disease | 21824424 | CNVD |
Melanoma | 18172304 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Gastric cancer | 17167181 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Intellectual disability | 22102821 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Prostate cancer | 16573809 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Multiple myeloma | 20724749 | CNVD |
Lung cancer | 18438408 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Prostate cancer | 18632612 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Breast cancer | 22032731 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Follicular lymphoma | 17170743 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Cancer | 21129771 | CNVD |
Breast cancer | 16272173 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Abnormal phenotypes | 18644119 | CNVD |
Cancer | 16751803 | CNVD |
Esophageal adenocarcinoma | 18820669 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Acute monocytic leukemia | 16498392 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Breast cancer | 17133270 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Non-syndromic sensorineural hearing loss | 19587683 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Breast cancer | 21509527 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:53871400-53906600 | Weak transcription | Fetal Kidney | kidney |
2 | chr15:53879400-53905000 | Weak transcription | Pancreas | Pancrea |
3 | chr15:53880000-53886400 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
4 | chr15:53882800-53883600 | Enhancers | Liver | Liver |
5 | chr15:53882800-53883800 | Flanking Active TSS | A549 | lung |
6 | chr15:53883600-53884000 | Weak transcription | Liver | Liver |
7 | chr15:53883800-53884000 | Enhancers | A549 | lung |
8 | chr15:53884000-53884400 | Genic enhancers | Liver | Liver |
9 | chr15:53884000-53884600 | Genic enhancers | A549 | lung |
10 | chr15:53884200-53884400 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
11 | chr15:53884400-53884600 | Strong transcription | Liver | Liver |
12 | chr15:53884400-53904000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
13 | chr15:53884600-53888600 | Weak transcription | Liver | Liver |
14 | chr15:53884600-53903400 | Weak transcription | A549 | lung |
15 | chr15:53886400-53886600 | Active TSS | ES-WA7 Cell Line | embryonic stem cell |
16 | chr15:53888600-53893600 | Strong transcription | Liver | Liver |
17 | chr15:53893600-53897200 | Weak transcription | Liver | Liver |
18 | chr15:53897200-53898400 | Strong transcription | Liver | Liver |
19 | chr15:53898400-53900400 | Weak transcription | Liver | Liver |
20 | chr15:53900400-53908400 | Strong transcription | Liver | Liver |
21 | chr15:53902400-53903400 | Enhancers | HUVEC | blood vessel |
22 | chr15:53903000-53903200 | Enhancers | ES-WA7 Cell Line | embryonic stem cell |
23 | chr15:53903000-53903400 | Enhancers | HepG2 | liver |
24 | chr15:53903200-53904000 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
25 | chr15:53903200-53904200 | Enhancers | HUES64 Cell Line | embryonic stem cell |
26 | chr15:53903200-53905200 | Enhancers | HUES6 Cell Line | embryonic stem cell |
27 | chr15:53903400-53903800 | Flanking Active TSS | HUVEC | blood vessel |
28 | chr15:53903400-53904200 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
29 | chr15:53903400-53904600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
30 | chr15:53903400-53904800 | Enhancers | A549 | lung |
31 | chr15:53903400-53904800 | Enhancers | NH-A | brain |
32 | chr15:53903400-53905000 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
33 | chr15:53903800-53904800 | Enhancers | HUVEC | blood vessel |
34 | chr15:53904000-53904200 | Enhancers | ES-WA7 Cell Line | embryonic stem cell |
35 | chr15:53904000-53904400 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
36 | chr15:53904000-53904800 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
37 | chr15:53904200-53904600 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
38 | chr15:53904200-53905000 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
39 | chr15:53904400-53905200 | Genic enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
40 | chr15:53904600-53905200 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
41 | chr15:53905000-53905200 | Enhancers | ES-WA7 Cell Line | embryonic stem cell |
42 | chr15:53905000-53905200 | Enhancers | Pancreas | Pancrea |
43 | chr15:53905200-53910800 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
44 | chr15:53905200-53918200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
45 | chr15:53908400-53918400 | Weak transcription | Liver | Liver |
46 | chr15:53910600-53911200 | Enhancers | HUES64 Cell Line | embryonic stem cell |
47 | chr15:53910800-53911200 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
48 | chr15:53910800-53911800 | Enhancers | HUES6 Cell Line | embryonic stem cell |
49 | chr15:53910800-53911800 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
50 | chr15:53911000-53912000 | Enhancers | HUES48 Cell Line | embryonic stem cell |