Variant report

Variant	nsv904500
Chromosome Location	chr15:93556442-93584615
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:40)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:40 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93579091..93580828-chr15:93586546..93588169,2	MCF-7	breast:
2	chr15:93579588..93581404-chr15:93595312..93596856,2	K562	blood:
3	chr15:93572208..93574371-chr15:93590379..93592416,2	MCF-7	breast:
4	chr15:93573201..93574876-chr15:94662029..94663789,2	MCF-7	breast:
5	chr15:93580132..93580807-chr15:94662834..94663577,2	MCF-7	breast:
6	chr15:93578885..93579662-chr15:94662813..94663759,5	MCF-7	breast:
7	chr15:93559913..93562026-chr15:93563701..93565744,2	MCF-7	breast:
8	chr15:93568688..93569217-chr15:93578899..93579602,2	K562	blood:
9	chr15:93559913..93562026-chr15:93563701..93565744,2	MCF-7	breast:
10	chr15:93573714..93576444-chr15:93578040..93581614,3	K562	blood:
11	chr15:93577362..93579561-chr15:93579719..93582659,2	K562	blood:
12	chr15:93566666..93569192-chr15:93570705..93573458,2	MCF-7	breast:
13	chr15:93330075..93332715-chr15:93568236..93570299,2	K562	blood:
14	chr15:93547576..93550295-chr15:93558635..93560283,2	K562	blood:
15	chr15:93562018..93563938-chr15:93568930..93571732,2	K562	blood:
16	chr15:93556383..93558755-chr15:93559559..93561416,2	K562	blood:
17	chr15:93571974..93576181-chr15:93579013..93582773,4	MCF-7	breast:
18	chr15:93573695..93574313-chr15:94867235..94868064,2	K562	blood:
19	chr15:93571974..93576181-chr15:93579013..93582773,4	MCF-7	breast:
20	chr15:93578869..93579602-chr15:93595481..93596255,3	MCF-7	breast:
21	chr15:93510857..93512827-chr15:93560102..93562368,2	K562	blood:
22	chr15:93573943..93574520-chr15:94867301..94868197,3	MCF-7	breast:
23	chr15:93563773..93566621-chr15:93566695..93568851,3	K562	blood:
24	chr15:93573582..93574651-chr15:94662849..94663780,6	MCF-7	breast:
25	chr15:93578889..93580004-chr15:94663299..94663957,4	MCF-7	breast:
26	chr15:93553525..93555690-chr15:93557526..93560088,2	MCF-7	breast:
27	chr15:93566666..93569192-chr15:93570705..93573458,2	MCF-7	breast:
28	chr15:93578825..93581018-chr15:93588117..93590197,2	K562	blood:
29	chr15:93340001..93340988-chr15:93573611..93574112,2	MCF-7	breast:
30	chr15:93556383..93558755-chr15:93559559..93561416,2	K562	blood:
31	chr15:93577362..93579561-chr15:93579719..93582659,2	K562	blood:
32	chr15:93573714..93576444-chr15:93578040..93581614,3	K562	blood:
33	chr15:93568688..93569217-chr15:93578899..93579602,2	K562	blood:
34	chr15:93574551..93577420-chr15:93579160..93580770,3	K562	blood:
35	chr15:93573787..93574363-chr15:94711530..94712086,2	MCF-7	breast:
36	chr15:93573487..93574458-chr15:93631113..93631758,2	K562	blood:
37	chr15:93574551..93577420-chr15:93579160..93580770,3	K562	blood:
38	chr15:93573480..93574993-chr15:94662647..94663828,19	MCF-7	breast:
39	chr15:93563773..93566621-chr15:93566695..93568851,3	K562	blood:
40	chr15:93562018..93563938-chr15:93568930..93571732,2	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHD2-1	chr15:93583948-93584357	XLOC_011358
2	lnc-RGMA-10	chr15:93556914-93557112	l_1226_chr15:93554028-93633805_testes
3	lnc-RGMA-10	chr15:93570233-93570342	l_1226_chr15:93554028-93633805_testes
4	lnc-CHD2-1	chr15:93584557-93584641	XLOC_011358

No data

Variant related genes	Relation type
ENSG00000185442	chromatin interactions
ENSG00000258570	chromatin interactions
ENSG00000182175	chromatin interactions
TBL1XR1	miRNA target sites
TBK1	miRNA target sites

Extended variants
information (count: 1416 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:1416 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2388056	chr15:93556442-93556443	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs150610615	chr15:93556468-93556469	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs190865117	chr15:93556498-93556499	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs555754778	chr15:93556530-93556531	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs71853607	chr15:93556533-93556534	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs377369948	chr15:93556535-93556536	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs144924493	chr15:93556536-93556537	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs140707618	chr15:93556538-93556539	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs200045138	chr15:93556541-93556542	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs141021566	chr15:93556565-93556566	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs566976090	chr15:93556615-93556616	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs561961999	chr15:93556685-93556686	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs182627337	chr15:93556736-93556737	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572734803	chr15:93556740-93556741	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs187059681	chr15:93556773-93556774	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs191868505	chr15:93556821-93556822	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs539443609	chr15:93556830-93556831	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs113436024	chr15:93556892-93556893	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs570031280	chr15:93556901-93556902	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs372149821	chr15:93556937-93556938	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs535976861	chr15:93556944-93556945	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs139700560	chr15:93556955-93556956	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs149791109	chr15:93556966-93556967	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs4778067	chr15:93556976-93556977	Strong transcription Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs553777154	chr15:93556980-93556981	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs542450308	chr15:93557015-93557016	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs577107676	chr15:93557033-93557034	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs545465952	chr15:93557062-93557063	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs184470599	chr15:93557095-93557096	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs75728502	chr15:93557132-93557133	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs111800273	chr15:93557158-93557159	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs543334326	chr15:93557159-93557160	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs59275403	chr15:93557186-93557187	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs368932124	chr15:93557187-93557188	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs369740179	chr15:93557191-93557192	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs558973588	chr15:93557272-93557273	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs562531123	chr15:93557282-93557283	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs575699470	chr15:93557328-93557329	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs541535761	chr15:93557372-93557373	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs544953528	chr15:93557442-93557443	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs376688609	chr15:93557450-93557451	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs576034630	chr15:93557465-93557466	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs577508680	chr15:93557552-93557553	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs548013114	chr15:93557563-93557564	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs144734472	chr15:93557650-93557651	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs533710285	chr15:93557656-93557657	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs549880957	chr15:93557661-93557662	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs16947333	chr15:93557678-93557679	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs62023154	chr15:93557748-93557749	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs556198588	chr15:93557750-93557751	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Acute myeloid leukemia	17237825	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD

Chromatin state (count:1030 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93493200-93571000	Strong transcription	Dnd41	blood
2	chr15:93493200-93571200	Strong transcription	Rectal Mucosa Donor 29	rectum
3	chr15:93493400-93568600	Strong transcription	Liver	Liver
4	chr15:93493400-93569600	Strong transcription	Placenta	Placenta
5	chr15:93493400-93571000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:93493400-93571000	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr15:93493600-93571400	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:93493800-93561400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:93493800-93571400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:93494000-93568200	Strong transcription	Fetal Thymus	thymus
11	chr15:93494000-93570400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:93494000-93570800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:93494000-93571000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:93494000-93571400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:93504000-93567800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:93505000-93569800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:93506000-93569800	Strong transcription	HepG2	liver
18	chr15:93506400-93561800	Strong transcription	A549	lung
19	chr15:93506400-93569600	Strong transcription	Fetal Muscle Trunk	muscle
20	chr15:93509600-93568000	Strong transcription	Primary B cells from cord blood	blood
21	chr15:93509600-93569600	Strong transcription	NHDF-Ad	bronchial
22	chr15:93509600-93571200	Strong transcription	Fetal Lung	lung
23	chr15:93509600-93571400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr15:93509800-93568600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:93509800-93572000	Strong transcription	Fetal Intestine Large	intestine
26	chr15:93512800-93560200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr15:93512800-93567800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:93512800-93567800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:93512800-93568000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:93513800-93560000	Strong transcription	Fetal Kidney	kidney
31	chr15:93514200-93561000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:93514200-93570800	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr15:93515000-93561000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr15:93521200-93568200	Strong transcription	Primary hematopoietic stem cells	blood
35	chr15:93521600-93568000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:93521800-93569400	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:93522800-93563200	Strong transcription	GM12878-XiMat	blood
38	chr15:93523000-93570600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:93525600-93563600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr15:93525600-93570600	Strong transcription	NH-A	brain
41	chr15:93525800-93560400	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr15:93525800-93567000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:93525800-93568600	Strong transcription	HUVEC	blood vessel
44	chr15:93526000-93570400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:93526200-93570000	Strong transcription	NHEK	skin
46	chr15:93526600-93569800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:93526800-93568000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:93526800-93572400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:93528000-93570200	Strong transcription	HMEC	breast
50	chr15:93531600-93569600	Strong transcription	K562	blood

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