Variant report

Variant	nsv906612
Chromosome Location	chr16:33828270-33912474
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95260054..95260733-chr16:33908997..33909498,2	MCF-7	breast:
2	chr16:33883354..33883854-chr16:33895502..33896105,2	MCF-7	breast:
3	chr16:33883354..33883854-chr16:33895502..33896105,2	MCF-7	breast:
4	chr10:42387171..42387692-chr16:33888891..33889406,2	MCF-7	breast:

Extended variants
information (count: 6143 )
Associated
traits (count: 121 )

Variant overlapped rSNPs/rCNVs (count:6143 , 50 per page) page: 1 2 3 4 5 6 7 ... 123

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs374993041	chr16:33836400-33836401	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs199850014	chr16:33836418-33836419	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs8054991	chr16:33836419-33836420	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs562899065	chr16:33836421-33836422	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs201363222	chr16:33836423-33836424	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs12149198	chr16:33836427-33836428	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs530425952	chr16:33836433-33836434	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs143404637	chr16:33836443-33836444	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs143823340	chr16:33836447-33836448	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs542155592	chr16:33836457-33836458	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs73545214	chr16:33836471-33836472	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs113754141	chr16:33836476-33836477	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs373150614	chr16:33836482-33836483	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs138174737	chr16:33836486-33836487	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs146205679	chr16:33836487-33836488	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs560232214	chr16:33836498-33836499	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs375967241	chr16:33836509-33836510	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs9674439	chr16:33836510-33836511	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	mRNA abundance
19	rs373031110	chr16:33836513-33836514	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs552331479	chr16:33836531-33836532	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs200841593	chr16:33836545-33836546	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs181170704	chr16:33836546-33836547	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs531276780	chr16:33836556-33836557	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs112512194	chr16:33836572-33836573	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs549959199	chr16:33836581-33836582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs77874744	chr16:33836582-33836583	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs568118214	chr16:33836599-33836600	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs535791475	chr16:33836606-33836607	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs201186385	chr16:33836607-33836608	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs547272596	chr16:33836613-33836614	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs566553129	chr16:33836620-33836621	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs533952165	chr16:33836625-33836626	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs369314283	chr16:33836627-33836628	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs558487082	chr16:33836631-33836632	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs540905089	chr16:33836632-33836633	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs375973162	chr16:33836639-33836640	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs368539785	chr16:33836664-33836665	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs537904168	chr16:33836684-33836685	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs202196499	chr16:33836716-33836717	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs200295745	chr16:33836717-33836718	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs113825733	chr16:33836735-33836736	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs556762704	chr16:33836737-33836738	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs8063616	chr16:33836762-33836763	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs375828655	chr16:33836778-33836779	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs560745774	chr16:33836779-33836780	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs572750191	chr16:33836783-33836784	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs199742319	chr16:33836794-33836795	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs545831547	chr16:33836798-33836799	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs200250976	chr16:33836800-33836801	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs78329435	chr16:33852217-33852218	Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:121)

Disease	PMID	Source
Hodgkin''s lymphoma	20651079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	18172304	CNVD
Breast cancer	16608533	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Autism	22566537	CNVD
Intellectual disability	22566537	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Ductal carcinoma	22052326	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Mental retardation	19951919	CNVD
Colorectal cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21990379	CNVD
Astrocytoma	22246337	CNVD
Myelofibrosis	22110671	CNVD
Epilepsy	22499536	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Austim spectrum disorder	21302340	CNVD
Autism	22513405	CNVD
Autism	22958593	CNVD
Autism	18184952	CNVD
Autism	19966786	CNVD
Autism	21394203	CNVD
Autism	21969575	CNVD
Autism	22241247	CNVD
Autism	20970697	CNVD
Autism	20942916	CNVD
Epilepsy	20970697	CNVD
Intellectual disability	22045946	CNVD
Mental retardation	19966786	CNVD
Developmental delay	20808231	CNVD
Obesity	20808231	CNVD
Autism	18923514	CNVD
Obesity	21881559	CNVD
Obesity	21956041	CNVD
Autism	20659124	CNVD
Mental retardation	21062444	CNVD
Schizophrenia	20587603	CNVD
Schizophrenia	21285140	CNVD
Schizophrenia	22885689	CNVD
Schizophrenia	20553308	CNVD
Schizophrenia	20970697	CNVD
Schizophrenia	20433910	CNVD
Schizophrenia	22241247	CNVD
Autism	19242545	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Intracranial ependymoma	16609018	CNVD
Schizophrenia	21399695	CNVD
Autism	21956041	CNVD
Disorders of sex development	21048976	CNVD
Autism	22067053	CNVD
Autism	18156158	CNVD
Mental retardation	20152051	CNVD
Autism	19218893	CNVD
Autism	21289514	CNVD
Schizophrenia	19855392	CNVD
neurodevelopmental Syndrome	20503337	CNVD
Benign familial neonatal-infantile seizures	21060786	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Cancer	21183584	CNVD
Low-grade fibromyxoid sarcoma	21536545	CNVD
Breast cancer	21045282	CNVD
Neuroblastoma	20406844	CNVD
Autism	19050728	CNVD
Epilepsy	20923578	CNVD
Psychiatric disorder	19050728	CNVD
Schizophrenia	19348701	CNVD
Attention deficit hyperactivity disorder	19097825	CNVD
Autism	20964600	CNVD
Schizophrenia	19955444	CNVD
Schizophrenia	18990708	CNVD
Schizophrenia	19571808	CNVD
Breast cancer	20409316	CNVD
Severe combined immunodeficiency	19097825	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Autism	18522746	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
early-passage human iPS cells	21368824	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22297974	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:812 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:33836400-33836800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:33852200-33852400	Active TSS	Brain Hippocampus Middle	brain
3	chr16:33852400-33852600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
4	chr16:33852600-33853400	Flanking Bivalent TSS/Enh	Placenta	Placenta
5	chr16:33852800-33854000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr16:33853000-33853600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
7	chr16:33853400-33853600	Bivalent Enhancer	Placenta	Placenta
8	chr16:33853400-33854000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr16:33853400-33854000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr16:33856800-33857800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr16:33862200-33862400	Enhancers	Esophagus	oesophagus
12	chr16:33862400-33864600	Weak transcription	Esophagus	oesophagus
13	chr16:33864400-33868800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr16:33864400-33868800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr16:33864600-33868800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr16:33864600-33868800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
17	chr16:33864600-33868800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr16:33864600-33868800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr16:33864600-33868800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr16:33864600-33868800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
21	chr16:33864600-33868800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
22	chr16:33864600-33868800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
23	chr16:33864600-33868800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr16:33864600-33868800	ZNF genes & repeats	Adipose Nuclei	Adipose
25	chr16:33864600-33868800	ZNF genes & repeats	Brain Anterior Caudate	brain
26	chr16:33864600-33868800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
27	chr16:33864600-33868800	ZNF genes & repeats	Colonic Mucosa	Colon
28	chr16:33864600-33868800	ZNF genes & repeats	Colon Smooth Muscle	Colon
29	chr16:33864600-33868800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
30	chr16:33864600-33868800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
31	chr16:33864600-33868800	ZNF genes & repeats	Esophagus	oesophagus
32	chr16:33864600-33868800	ZNF genes & repeats	Fetal Kidney	kidney
33	chr16:33864600-33868800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
34	chr16:33864600-33868800	ZNF genes & repeats	Gastric	stomach
35	chr16:33864600-33868800	ZNF genes & repeats	Dnd41	blood
36	chr16:33864600-33868800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
37	chr16:33864800-33866800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr16:33864800-33866800	ZNF genes & repeats	HSMMtube	muscle
39	chr16:33864800-33866800	ZNF genes & repeats	NHEK	skin
40	chr16:33864800-33868600	ZNF genes & repeats	Primary B cells from cord blood	blood
41	chr16:33864800-33868600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
42	chr16:33864800-33868600	ZNF genes & repeats	Fetal Muscle Leg	muscle
43	chr16:33864800-33868600	ZNF genes & repeats	Fetal Stomach	stomach
44	chr16:33864800-33868600	ZNF genes & repeats	Lung	lung
45	chr16:33864800-33868600	ZNF genes & repeats	Hela-S3	cervix
46	chr16:33864800-33868800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
47	chr16:33864800-33868800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
48	chr16:33864800-33868800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr16:33864800-33868800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr16:33864800-33868800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links