Variant report

Variant	nsv906960
Chromosome Location	chr16:77631520-77663968
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:49)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:49 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:77634214..77636366-chr16:77646332..77647931,2	MCF-7	breast:
2	chr16:77636229..77638868-chr16:78030864..78032509,2	MCF-7	breast:
3	chr16:77624513..77627357-chr16:77638396..77640747,2	MCF-7	breast:
4	chr16:77269648..77270617-chr16:77633407..77634157,3	MCF-7	breast:
5	chr16:77632750..77638052-chr16:77677805..77683228,7	MCF-7	breast:
6	chr16:77637560..77638380-chr16:77708753..77709733,3	MCF-7	breast:
7	chr16:77269674..77270537-chr16:77630372..77631796,5	MCF-7	breast:
8	chr16:77633458..77634301-chr16:78036771..78037492,2	MCF-7	breast:
9	chr16:77633435..77634605-chr16:77694012..77694839,5	MCF-7	breast:
10	chr16:77652245..77655116-chr16:77670753..77672397,2	MCF-7	breast:
11	chr16:77635631..77639665-chr16:78082151..78086401,6	MCF-7	breast:
12	chr16:77636182..77638707-chr16:77703957..77706105,3	MCF-7	breast:
13	chr16:77633440..77634335-chr16:78005542..78006105,2	MCF-7	breast:
14	chr16:77631425..77634877-chr16:77636805..77640283,4	MCF-7	breast:
15	chr16:77636418..77639200-chr16:77708861..77710434,2	MCF-7	breast:
16	chr16:77638173..77640324-chr16:78132312..78134748,3	MCF-7	breast:
17	chr16:77635798..77638435-chr16:78034127..78036225,3	MCF-7	breast:
18	chr16:77270739..77273458-chr16:77636094..77637749,2	MCF-7	breast:
19	chr16:77633668..77634317-chr16:77827464..77828066,2	K562	blood:
20	chr16:77627723..77631345-chr16:77632470..77634432,3	MCF-7	breast:
21	chr16:77641802..77644551-chr16:77659308..77662282,2	MCF-7	breast:
22	chr16:77636391..77638853-chr16:78086432..78088763,2	MCF-7	breast:
23	chr16:77637272..77638261-chr16:78084620..78085411,4	MCF-7	breast:
24	chr16:77635946..77638059-chr16:77690308..77692551,2	MCF-7	breast:
25	chr16:77635496..77637078-chr16:77692584..77695070,3	MCF-7	breast:
26	chr16:77641802..77644551-chr16:77659308..77662282,2	MCF-7	breast:
27	chr16:77635547..77639833-chr16:77643081..77646196,4	MCF-7	breast:
28	chr16:77634889..77635492-chr16:78005438..78006098,2	MCF-7	breast:
29	chr16:77635695..77637428-chr16:78133326..78134927,2	MCF-7	breast:
30	chr16:77626884..77631201-chr16:77634780..77638487,6	MCF-7	breast:
31	chr16:77617063..77620231-chr16:77635961..77639482,4	MCF-7	breast:
32	chr16:77657528..77659608-chr16:77662783..77664358,2	MCF-7	breast:
33	chr16:77636436..77639856-chr16:77651156..77654256,4	MCF-7	breast:
34	chr16:77638698..77640543-chr16:78082140..78085063,3	MCF-7	breast:
35	chr16:77636436..77639856-chr16:77651156..77654256,4	MCF-7	breast:
36	chr16:77244991..77247286-chr16:77635984..77637881,2	MCF-7	breast:
37	chr16:77635928..77639763-chr16:77707464..77711243,6	MCF-7	breast:
38	chr16:77657528..77659608-chr16:77662783..77664358,2	MCF-7	breast:
39	chr16:77622459..77625433-chr16:77633946..77636644,2	MCF-7	breast:
40	chr16:77644345..77646917-chr16:77647534..77649296,2	MCF-7	breast:
41	chr16:77635547..77639833-chr16:77643081..77646196,4	MCF-7	breast:
42	chr16:77650374..77650964-chr3:174717215..174717905,2	MCF-7	breast:
43	chr16:77635739..77638106-chr16:78082889..78086047,4	MCF-7	breast:
44	chr16:77633681..77634587-chr16:77709347..77710202,4	MCF-7	breast:
45	chr16:77644345..77646917-chr16:77647534..77649296,2	MCF-7	breast:
46	chr16:77631425..77634877-chr16:77636805..77640283,4	MCF-7	breast:
47	chr16:77633402..77634464-chr16:77694120..77694942,5	MCF-7	breast:
48	chr16:77634214..77636366-chr16:77646332..77647931,2	MCF-7	breast:
49	chr16:77618149..77620811-chr16:77638039..77640626,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NUDT7-2	chr16:77632982-77633140	ENSG00000261154.1
2	lnc-NUDT7-2	chr16:77644434-77644578	ENSG00000261154.1

No data

Variant related genes	Relation type
ENSG00000205078	chromatin interactions
ENSG00000186153	chromatin interactions
ENSG00000260731	chromatin interactions
ENSG00000261154	chromatin interactions

Extended variants
information (count: 695 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:695 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs183997	chr16:77631520-77631521	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs116115748	chr16:77631545-77631546	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs546243370	chr16:77631563-77631564	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs35689982	chr16:77631569-77631570	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs146582579	chr16:77631597-77631598	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs567135057	chr16:77631604-77631605	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs535546951	chr16:77631605-77631606	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs538294423	chr16:77631617-77631618	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs558507226	chr16:77631622-77631623	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs116371061	chr16:77631630-77631631	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs538116005	chr16:77631642-77631643	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs554819218	chr16:77631660-77631661	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs574644322	chr16:77631719-77631720	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs543145472	chr16:77631724-77631725	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs143591029	chr16:77631730-77631731	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs573359906	chr16:77631780-77631781	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs545100731	chr16:77631796-77631797	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs145686627	chr16:77631813-77631814	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs149017373	chr16:77631834-77631835	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs531129577	chr16:77631837-77631838	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs375086065	chr16:77631867-77631868	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs561151573	chr16:77631871-77631872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs191704889	chr16:77631894-77631895	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs113107565	chr16:77631897-77631898	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs546780008	chr16:77631902-77631903	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs566262252	chr16:77631918-77631919	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs166876	chr16:77631921-77631922	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs188178	chr16:77631931-77631932	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs78625510	chr16:77631964-77631965	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs537758893	chr16:77631994-77631995	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs114414763	chr16:77632000-77632001	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs184669524	chr16:77632048-77632049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs534014432	chr16:77632049-77632050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs143815533	chr16:77632068-77632069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs190208097	chr16:77632079-77632080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs578175039	chr16:77632095-77632096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs200803261	chr16:77632122-77632123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs540571571	chr16:77632156-77632157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs545453010	chr16:77632213-77632214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs193151162	chr16:77632215-77632216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs554365075	chr16:77632222-77632223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs200033082	chr16:77632260-77632261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs374791932	chr16:77632264-77632265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs575550244	chr16:77632286-77632287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs545663396	chr16:77632293-77632294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs544279396	chr16:77632311-77632312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs185509070	chr16:77632368-77632369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs535282623	chr16:77632405-77632406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs189219218	chr16:77632409-77632410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs74964164	chr16:77632417-77632418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Poland''s syndrome	22110015	CNVD
Neuroblastoma	21899760	CNVD
Liver carcinoma	19366792	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	19156837	CNVD
Acute myeloid leukemia	17377590	CNVD
Breast cancer	20409316	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Lung cancer	24585490	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:77624000-77632000	Enhancers	HUVEC	blood vessel
2	chr16:77632000-77633200	Weak transcription	HUVEC	blood vessel
3	chr16:77633200-77634200	Enhancers	HUVEC	blood vessel
4	chr16:77635600-77635800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:77635600-77636000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:77637000-77637600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr16:77637200-77637800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr16:77637400-77637800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr16:77637400-77637800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr16:77637400-77638000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr16:77637400-77638000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr16:77637400-77638200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr16:77637800-77640800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr16:77645400-77646000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr16:77646600-77647400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr16:77647200-77647600	Enhancers	Fetal Muscle Leg	muscle
17	chr16:77651200-77653000	Enhancers	HUVEC	blood vessel
18	chr16:77651600-77652000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr16:77652000-77652200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr16:77652000-77652200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr16:77652000-77652200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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