Variant report

Variant	nsv911486
Chromosome Location	chr19:24407394-24531039
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:121483249..121485033-chr19:24456836..24458356,4	K562	blood:
2	chr1:121483249..121485033-chr19:24456855..24458356,4	K562	blood:

Extended variants
information (count: 6740 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:6740 , 50 per page) page: 1 2 3 4 5 6 7 ... 135

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs563547693	chr19:24407410-24407411	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs186328674	chr19:24407417-24407418	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs571695682	chr19:24407434-24407435	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs199954246	chr19:24407471-24407472	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs543323780	chr19:24407479-24407480	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs200971734	chr19:24407484-24407485	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs561617381	chr19:24407491-24407492	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs371833534	chr19:24407502-24407503	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs573774681	chr19:24407518-24407519	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs151064914	chr19:24407522-24407523	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs559214064	chr19:24407525-24407526	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs533037197	chr19:24407528-24407529	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs551442994	chr19:24407532-24407533	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs563274908	chr19:24407577-24407578	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs530476546	chr19:24407589-24407590	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs575626117	chr19:24407600-24407601	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs567927986	chr19:24407602-24407603	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs534940823	chr19:24407616-24407617	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs141333531	chr19:24407620-24407621	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs571699187	chr19:24407644-24407645	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs558541747	chr19:24407650-24407651	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs191228238	chr19:24407659-24407660	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs556997109	chr19:24407697-24407698	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs568928955	chr19:24407705-24407706	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs183077527	chr19:24407709-24407710	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs185969832	chr19:24407728-24407729	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs527805655	chr19:24407730-24407731	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs34638121	chr19:24407739-24407740	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs191128027	chr19:24407740-24407741	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs9916961	chr19:24407754-24407755	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs114529014	chr19:24407771-24407772	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs534648397	chr19:24407774-24407775	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs563337525	chr19:24407776-24407777	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs9916963	chr19:24407802-24407803	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs542630852	chr19:24407808-24407809	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs546400645	chr19:24407811-24407812	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs114060370	chr19:24407864-24407865	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs561402379	chr19:24407931-24407932	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs76838022	chr19:24407968-24407969	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs140709602	chr19:24407976-24407977	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs183304123	chr19:24408037-24408038	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs9916969	chr19:24408051-24408052	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs116426585	chr19:24408065-24408066	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs568986218	chr19:24408066-24408067	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs536278885	chr19:24408082-24408083	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs563110333	chr19:24408093-24408094	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs188007921	chr19:24408099-24408100	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs192281486	chr19:24408109-24408110	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs534919978	chr19:24408120-24408121	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs552950040	chr19:24408138-24408139	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:188 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24400000-24410400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr19:24403400-24412800	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:24403400-24415200	ZNF genes & repeats	Liver	Liver
4	chr19:24408400-24408800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
5	chr19:24408600-24414600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr19:24409200-24410200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr19:24409400-24410200	Active TSS	Right Atrium	heart
8	chr19:24409800-24410800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr19:24410200-24412200	Weak transcription	Right Atrium	heart
10	chr19:24412200-24412600	Active TSS	Right Atrium	heart
11	chr19:24412200-24412800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr19:24413400-24414800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chr19:24419200-24424200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr19:24420600-24422600	ZNF genes & repeats	Adipose Nuclei	Adipose
15	chr19:24420800-24422600	ZNF genes & repeats	Liver	Liver
16	chr19:24422000-24422600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr19:24424600-24425200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr19:24435000-24440000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr19:24436000-24439600	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr19:24436600-24436800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr19:24440600-24444800	ZNF genes & repeats	Liver	Liver
22	chr19:24442400-24445000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
23	chr19:24443000-24446200	ZNF genes & repeats	Adipose Nuclei	Adipose
24	chr19:24444000-24444800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr19:24444800-24446400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr19:24445200-24445400	ZNF genes & repeats	Brain Substantia Nigra	brain
27	chr19:24445400-24445800	Active TSS	Brain Substantia Nigra	brain
28	chr19:24450200-24451400	ZNF genes & repeats	Adipose Nuclei	Adipose
29	chr19:24451400-24451600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
30	chr19:24455800-24462600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr19:24457000-24458600	ZNF genes & repeats	Liver	Liver
32	chr19:24457600-24458600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
33	chr19:24468000-24473400	ZNF genes & repeats	Liver	Liver
34	chr19:24468400-24496800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
35	chr19:24468600-24477400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
36	chr19:24469200-24504400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr19:24472000-24475000	ZNF genes & repeats	Adipose Nuclei	Adipose
38	chr19:24472800-24473200	Active TSS	Aorta	Aorta
39	chr19:24473200-24474200	Weak transcription	Aorta	Aorta
40	chr19:24474000-24474800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chr19:24474200-24474400	ZNF genes & repeats	Brain Substantia Nigra	brain
42	chr19:24474200-24474400	ZNF genes & repeats	Dnd41	blood
43	chr19:24474200-24474400	ZNF genes & repeats	Osteobl	bone
44	chr19:24474200-24474600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
45	chr19:24474200-24474600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
46	chr19:24474200-24474800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
47	chr19:24474200-24474800	ZNF genes & repeats	Primary T cells from cord blood	blood
48	chr19:24474200-24474800	Active TSS	Aorta	Aorta
49	chr19:24474200-24474800	ZNF genes & repeats	NH-A	brain
50	chr19:24474200-24475000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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