Variant report

Variant	nsv911490
Chromosome Location	chr19:24482072-24610794
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10232 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:10232 , 50 per page) page: 1 2 3 4 5 6 7 ... 205

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4258741	chr19:24482072-24482073	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs576742361	chr19:24482079-24482080	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs77924884	chr19:24482080-24482081	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs543866427	chr19:24482081-24482082	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs4490108	chr19:24482093-24482094	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs142415272	chr19:24482102-24482103	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs541993012	chr19:24482103-24482104	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs184798202	chr19:24482108-24482109	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs367936251	chr19:24482122-24482123	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs372770343	chr19:24482126-24482127	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs552467464	chr19:24482137-24482138	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs564247002	chr19:24482138-24482139	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs552809014	chr19:24482141-24482142	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs572571494	chr19:24482155-24482156	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs373839783	chr19:24482186-24482187	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs145974760	chr19:24482223-24482224	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs550709922	chr19:24482235-24482236	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs569277829	chr19:24482242-24482243	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs12610773	chr19:24482256-24482257	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs561587170	chr19:24482277-24482278	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs62114094	chr19:24482309-24482310	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs113272136	chr19:24482313-24482314	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs534143375	chr19:24482317-24482318	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs181666283	chr19:24482322-24482323	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs573432521	chr19:24482326-24482327	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs78068589	chr19:24482351-24482352	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs144568034	chr19:24482370-24482371	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs538570403	chr19:24482386-24482387	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs555883968	chr19:24482387-24482388	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs574403138	chr19:24482389-24482390	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs148480108	chr19:24482412-24482413	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs560306657	chr19:24482419-24482420	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs572243614	chr19:24482426-24482427	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs544172246	chr19:24482443-24482444	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs564367383	chr19:24482471-24482472	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs540283899	chr19:24482472-24482473	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs372957467	chr19:24482496-24482497	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs563649737	chr19:24482508-24482509	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs532582628	chr19:24482512-24482513	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs4507031	chr19:24482546-24482547	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs115426973	chr19:24482553-24482554	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs530048627	chr19:24482576-24482577	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs548247058	chr19:24482586-24482587	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs4637035	chr19:24482590-24482591	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
45	rs528069948	chr19:24482604-24482605	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs375720516	chr19:24482616-24482617	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs548204373	chr19:24482633-24482634	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs534084862	chr19:24482636-24482637	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs200493660	chr19:24482637-24482638	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs528250948	chr19:24482649-24482650	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:255 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24468400-24496800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr19:24469200-24504400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:24475600-24504400	ZNF genes & repeats	Liver	Liver
4	chr19:24478600-24484600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:24480000-24493400	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:24481600-24494000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr19:24484400-24485000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:24484800-24486000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr19:24486400-24487200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
10	chr19:24486400-24490800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr19:24491800-24492400	Active TSS	Aorta	Aorta
12	chr19:24495600-24497600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr19:24499000-24502200	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr19:24499200-24502000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr19:24500800-24501200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr19:24503800-24512000	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr19:24505400-24505800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
18	chr19:24507800-24577200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr19:24508000-24573400	ZNF genes & repeats	Liver	Liver
20	chr19:24508800-24569000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr19:24509200-24570800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
22	chr19:24509400-24510200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
23	chr19:24513000-24571800	ZNF genes & repeats	Adipose Nuclei	Adipose
24	chr19:24513400-24527000	ZNF genes & repeats	Dnd41	blood
25	chr19:24513600-24530800	ZNF genes & repeats	Psoas Muscle	Psoas
26	chr19:24513800-24518200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
27	chr19:24514400-24519400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
28	chr19:24515400-24516200	Active TSS	Right Atrium	heart
29	chr19:24515400-24517200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
30	chr19:24515400-24519400	ZNF genes & repeats	Brain Hippocampus Middle	brain
31	chr19:24517400-24519600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr19:24517800-24520200	Active TSS	Aorta	Aorta
33	chr19:24520200-24522200	Weak transcription	Aorta	Aorta
34	chr19:24521200-24522200	Active TSS	Fetal Heart	heart
35	chr19:24521200-24526600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
36	chr19:24521400-24521600	ZNF genes & repeats	Fetal Lung	lung
37	chr19:24522000-24576600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr19:24522200-24523800	Active TSS	Aorta	Aorta
39	chr19:24523000-24523200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr19:24523200-24526400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
41	chr19:24523800-24524200	Weak transcription	Aorta	Aorta
42	chr19:24524000-24526600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
43	chr19:24524600-24526400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
44	chr19:24524800-24526600	ZNF genes & repeats	Colon Smooth Muscle	Colon
45	chr19:24524800-24529600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr19:24524800-24530400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
47	chr19:24525200-24526400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
48	chr19:24525200-24542000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
49	chr19:24525400-24577200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
50	chr19:24525600-24526800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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