Variant report

Variant	nsv911640
Chromosome Location	chr19:36353880-36365985
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:317)
CpG islands
(count:1526)
Chromatin interactive
region (count:20)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:317 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:36360868-36361320	K562	blood:	n/a	n/a
2	ATF2	chr19:36360710-36361472	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr19:36359150-36359446	H1-hESC	embryonic stem cell:	n/a	n/a
4	BCL3	chr19:36359819-36361440	A549	lung:	n/a	chr19:36360912-36360921 chr19:36360553-36360562 chr19:36360410-36360418
5	BHLHE40	chr19:36360510-36360878	K562	blood:	n/a	n/a
6	BRCA1	chr19:36360143-36360299	H1-hESC	embryonic stem cell:	n/a	n/a
7	CBX3	chr19:36360504-36360967	K562	blood:	n/a	n/a
8	CCNT2	chr19:36360552-36360822	K562	blood:	n/a	n/a
9	CCNT2	chr19:36359223-36359695	K562	blood:	n/a	chr19:36359297-36359306
10	CEBPB	chr19:36363113-36363313	A549	lung:	n/a	chr19:36363188-36363201
11	CEBPB	chr19:36363154-36363326	K562	blood:	n/a	chr19:36363188-36363201
12	CEBPB	chr19:36360297-36360450	H1-hESC	embryonic stem cell:	n/a	n/a
13	CHD1	chr19:36361848-36361942	H1-hESC	embryonic stem cell:	n/a	n/a
14	CHD2	chr19:36360786-36360945	K562	blood:	n/a	n/a
15	CHD2	chr19:36360337-36361225	H1-hESC	embryonic stem cell:	n/a	n/a
16	CREB1	chr19:36360076-36361110	A549	lung:	n/a	n/a
17	CREB1	chr19:36359151-36359886	A549	lung:	n/a	n/a
18	CTCF	chr19:36360540-36360690	WERI-Rb-1	eye:	n/a	n/a
19	CTCF	chr19:36361808-36362101	K562	blood:	n/a	n/a
20	CTCF	chr19:36361800-36361950	GM12875	blood:	n/a	n/a
21	CTCF	chr19:36361780-36361930	HEK293	kidney:	n/a	n/a
22	CTCF	chr19:36361800-36361950	HBMEC	blood vessel:	n/a	n/a
23	CTCF	chr19:36361834-36361906	K562	blood:	n/a	n/a
24	CTCF	chr19:36360360-36360510	GM12864	blood:	n/a	n/a
25	CTCF	chr19:36361784-36362012	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr19:36361840-36361990	K562	blood:	n/a	n/a
27	CTCF	chr19:36360260-36360410	SK-N-SH_RA	brain:	n/a	n/a
28	CTCF	chr19:36361840-36361990	WERI-Rb-1	eye:	n/a	n/a
29	CTCF	chr19:36361900-36362050	GM12871	blood:	n/a	n/a
30	CTCF	chr19:36361700-36361850	HRE	kidney:	n/a	n/a
31	CTCF	chr19:36361760-36361910	GM12866	blood:	n/a	n/a
32	CTCF	chr19:36361760-36361910	HEK293	kidney:	n/a	n/a
33	CTCF	chr19:36361840-36361990	GM12878	blood:	n/a	n/a
34	CTCF	chr19:36361740-36361890	AG09309	skin:	n/a	n/a
35	CTCF	chr19:36359560-36359710	GM12874	blood:	n/a	n/a
36	CTCF	chr19:36361860-36362010	A549	lung:	n/a	n/a
37	CTCF	chr19:36361780-36361930	HL-60	blood:	n/a	n/a
38	CTCF	chr19:36355740-36355890	GM12866	blood:	n/a	n/a
39	CTCF	chr19:36361760-36361910	GM12873	blood:	n/a	n/a
40	CTCF	chr19:36355500-36355650	HFF-Myc	foreskin:	n/a	n/a
41	CTCF	chr19:36361820-36361970	Hela-S3	cervix:	n/a	n/a
42	CTCF	chr19:36361260-36361410	GM12875	blood:	n/a	n/a
43	CTCF	chr19:36359780-36359930	GM12870	blood:	n/a	chr19:36359795-36359808
44	CTCF	chr19:36361723-36361973	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr19:36361780-36361930	HepG2	liver:	n/a	n/a
46	CTCF	chr19:36361877-36361913	Hela-S3	cervix:	n/a	n/a
47	CTCF	chr19:36361809-36361986	K562	blood:	n/a	n/a
48	E2F6	chr19:36359198-36359720	K562	blood:	n/a	n/a
49	E2F6	chr19:36360430-36360865	K562	blood:	n/a	n/a
50	E2F6	chr19:36360449-36360918	H1-hESC	embryonic stem cell:	n/a	n/a

(count:1526 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:36362894-36362944	ovcar-3	ovarian:	n/a
2	chr19:36362894-36362944	ovcar-3	ovarian:	n/a
3	chr19:36359556-36359606	HMEC	breast:	n/a
4	chr19:36365800-36365850	GM06990	blood:	n/a
5	chr19:36359327-36359377	Hepatocyte	liver:	n/a
6	chr19:36362894-36362944	HEEpiC	esophagus:	n/a
7	chr19:36359250-36359300	BJ	skin:	n/a
8	chr19:36357115-36357165	SK-N-SH_RA	brain:	n/a
9	chr19:36360529-36360579	NB4	blood:	n/a
10	chr19:36365557-36365607	HRE	kidney:	n/a
11	chr19:36359250-36359300	Caco-2	colon:	n/a
12	chr19:36359302-36359352	NT2-D1	testis:	n/a
13	chr19:36360605-36360655	HIPEpiC	eye:	n/a
14	chr19:36359302-36359352	PrEC	prostate:	n/a
15	chr19:36365800-36365850	LNCaP	prostate:	n/a
16	chr19:36365800-36365850	HIPEpiC	eye:	n/a
17	chr19:36365800-36365850	HPAEpiC	pulmonary alveolar:	n/a
18	chr19:36365800-36365850	HEEpiC	esophagus:	n/a
19	chr19:36365679-36365729	Hela-S3	cervix:	n/a
20	chr19:36360834-36360884	AG09319	gingival:	n/a
21	chr19:36359327-36359377	A549	lung:	n/a
22	chr19:36359516-36359566	GM12891	blood:	n/a
23	chr19:36357115-36357165	MCF10A-Er-Src	breast:	n/a
24	chr19:36357700-36357750	ovcar-3	ovarian:	n/a
25	chr19:36365800-36365850	HCPEpiC	choroid plexus:	n/a
26	chr19:36359772-36359822	GM12878	blood:	n/a
27	chr19:36360605-36360655	GM12891	blood:	n/a
28	chr19:36359283-36359333	SAEC	small airway:	n/a
29	chr19:36365514-36365564	BE2_C	brain:	n/a
30	chr19:36365679-36365729	HCPEpiC	choroid plexus:	n/a
31	chr19:36360489-36360539	HAEpiC	amniotic membrane:	n/a
32	chr19:36359302-36359352	MCF-7	breast:	n/a
33	chr19:36359283-36359333	MCF10A-Er-Src	breast:	n/a
34	chr19:36359556-36359606	HL-60	blood:	n/a
35	chr19:36365557-36365607	MCF-7	breast:	n/a
36	chr19:36358613-36358663	GM12892	blood:	n/a
37	chr19:36359772-36359822	AG10803	skin:	n/a
38	chr19:36362894-36362944	AoSMC	blood vessel:	n/a
39	chr19:36360834-36360884	HIPEpiC	eye:	n/a
40	chr19:36365800-36365850	PrEC	prostate:	n/a
41	chr19:36359295-36359345	HAEpiC	amniotic membrane:	n/a
42	chr19:36359516-36359566	GM12878	blood:	n/a
43	chr19:36365307-36365357	PANC-1	pancreas:	n/a
44	chr19:36360529-36360579	HCM	heart:	n/a
45	chr19:36359302-36359352	NHBE	bronchial:	n/a
46	chr19:36359211-36359261	HL-60	blood:	n/a
47	chr19:36365800-36365850	U87	brain:	n/a
48	chr19:36365679-36365729	HMEC	breast:	n/a
49	chr19:36357700-36357750	CMK	blood:	n/a
50	chr19:36365557-36365607	H1-hESC	embryonic stem cell:	embryo

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:36359256..36363302-chr19:36368429..36371554,3	K562	blood:
2	chr19:36361275..36362791-chr19:36390518..36392697,2	K562	blood:
3	chr19:36359272..36362126-chr19:36389056..36392231,3	MCF-7	breast:
4	chr19:36359233..36364587-chr19:36367940..36372688,7	K562	blood:
5	chr19:36208185..36209878-chr19:36358146..36361161,3	K562	blood:
6	chr19:36335780..36337313-chr19:36359455..36361667,2	MCF-7	breast:
7	chr19:36247691..36250491-chr19:36351522..36354287,2	MCF-7	breast:
8	chr19:36358531..36360792-chr19:36503749..36506105,2	MCF-7	breast:
9	chr19:36359598..36361922-chr19:36393124..36395167,2	K562	blood:
10	chr19:36352312..36355033-chr19:36357971..36359905,3	MCF-7	breast:
11	chr19:36208378..36210285-chr19:36358548..36361708,3	K562	blood:
12	chr19:36352834..36354607-chr19:36359086..36361937,3	K562	blood:
13	chr19:36363822..36367543-chr19:36368056..36371316,4	K562	blood:
14	chr19:36208544..36210188-chr19:36360524..36362280,2	MCF-7	breast:
15	chr19:36365053..36367604-chr19:36368904..36371843,2	MCF-7	breast:
16	chr19:36358705..36361314-chr19:36484649..36486725,2	K562	blood:
17	chr19:36335744..36339702-chr19:36359166..36361673,6	MCF-7	breast:
18	chr19:36352834..36355328-chr19:36359086..36361256,3	K562	blood:
19	chr19:36338551..36341228-chr19:36359496..36361624,3	K562	blood:
20	chr19:36235922..36238148-chr19:36359346..36361404,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NPHS1-3	chr19:36359994-36360189	NONHSAT065928
2	lnc-NPHS1-3	chr19:36358777-36359032	NONHSAT065928
3	lnc-NPHS1-3	chr19:36357389-36357495	NONHSAT065928

No data

Variant related genes	Relation type
NPHS1	TF binding region
APLP1	TF binding region
NPHS1	CpG island
APLP1	CpG island
ENSG00000161270	chromatin interactions
ENSG00000126264	chromatin interactions
ENSG00000167595	chromatin interactions
ENSG00000188223	chromatin interactions
ENSG00000272333	chromatin interactions
ENSG00000205155	chromatin interactions
ENSG00000167604	chromatin interactions
ENSG00000004776	chromatin interactions
ENSG00000161265	chromatin interactions
ENSG00000267120	chromatin interactions
ENSG00000239382	chromatin interactions
ENSG00000267698	chromatin interactions
ENSG00000105290	chromatin interactions
ENSG00000205138	chromatin interactions

Extended variants
information (count: 561 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:561 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs35775934	chr19:36353880-36353881	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs369124252	chr19:36353882-36353883	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
3	rs546664803	chr19:36353884-36353885	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
4	rs568052527	chr19:36353912-36353913	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs199552023	chr19:36353928-36353929	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
6	rs77377154	chr19:36353929-36353930	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
7	rs116357288	chr19:36353993-36353994	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
8	rs185967316	chr19:36354061-36354062	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
9	rs539289547	chr19:36354065-36354066	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
10	rs535041802	chr19:36354087-36354088	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
11	rs557610161	chr19:36354126-36354127	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs566478409	chr19:36354133-36354134	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs373458101	chr19:36354148-36354149	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs76662935	chr19:36354182-36354183	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
15	rs28397943	chr19:36354211-36354212	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs113764784	chr19:36354220-36354221	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs544711876	chr19:36354226-36354227	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs375141921	chr19:36354345-36354346	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs111603435	chr19:36354364-36354365	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs140009065	chr19:36354386-36354387	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs141959005	chr19:36354417-36354418	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs545644011	chr19:36354421-36354422	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs560764093	chr19:36354428-36354429	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs528032572	chr19:36354489-36354490	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs540194841	chr19:36354499-36354500	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs188920326	chr19:36354536-36354537	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs807660	chr19:36354606-36354607	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs528947884	chr19:36354687-36354688	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs550635920	chr19:36354749-36354750	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs568888226	chr19:36354882-36354883	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs532959343	chr19:36354885-36354886	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs182008870	chr19:36354888-36354889	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs566392256	chr19:36354920-36354921	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs11084832	chr19:36354924-36354925	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs549077562	chr19:36354956-36354957	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs567663439	chr19:36354972-36354973	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs112424729	chr19:36354973-36354974	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs369102938	chr19:36355008-36355009	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs142613655	chr19:36355027-36355028	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs575782044	chr19:36355034-36355035	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs371550887	chr19:36355069-36355070	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs113984862	chr19:36355078-36355079	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs368028054	chr19:36355079-36355080	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs61660390	chr19:36355107-36355108	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs146898144	chr19:36355111-36355112	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs543470158	chr19:36355115-36355116	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs578070210	chr19:36355149-36355150	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs539225393	chr19:36355162-36355163	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs554415978	chr19:36355260-36355261	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs572730298	chr19:36355284-36355285	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Ovarian cancer	21397856	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Ovarian cancer	20844748	CNVD
Non-small cell lung cancer	21829676	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cancer	21183584	CNVD
Honadal dysgenesis	21048976	CNVD
Neurodevelopmental disorder	22521361	CNVD
Endometrial cancer	23636398	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Gastric cancer	21811585	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Glioma	17123091	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:640 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36349600-36358800	Weak transcription	Dnd41	blood
2	chr19:36352000-36354000	Enhancers	K562	blood
3	chr19:36352200-36359000	Weak transcription	Right Atrium	heart
4	chr19:36352800-36358600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr19:36352800-36358600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:36352800-36358600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr19:36353000-36356600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:36353200-36354000	Enhancers	HepG2	liver
9	chr19:36353200-36358400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr19:36353400-36358400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:36353600-36357600	Strong transcription	Pancreas	Pancrea
12	chr19:36353600-36358600	Weak transcription	Fetal Brain Female	brain
13	chr19:36353600-36359400	Weak transcription	Gastric	stomach
14	chr19:36353800-36354000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr19:36353800-36354000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr19:36353800-36354000	Bivalent Enhancer	Placenta	Placenta
17	chr19:36354000-36355400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr19:36354000-36355800	Weak transcription	K562	blood
19	chr19:36354000-36358400	Weak transcription	HepG2	liver
20	chr19:36355400-36355600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr19:36355400-36356000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr19:36355600-36355800	ZNF genes & repeats	Spleen	Spleen
23	chr19:36355800-36356000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr19:36355800-36356000	Bivalent Enhancer	Left Ventricle	heart
25	chr19:36355800-36356000	Flanking Active TSS	K562	blood
26	chr19:36356600-36356800	Enhancers	Esophagus	oesophagus
27	chr19:36356600-36357000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:36356600-36357000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr19:36356800-36359000	Weak transcription	Esophagus	oesophagus
30	chr19:36357000-36358600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr19:36357600-36358600	Weak transcription	Pancreas	Pancrea
32	chr19:36357800-36358000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr19:36358000-36358200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr19:36358000-36359000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr19:36358400-36358600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr19:36358400-36358800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr19:36358400-36359000	Enhancers	Fetal Brain Male	brain
38	chr19:36358400-36359400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr19:36358600-36358800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr19:36358600-36358800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
41	chr19:36358600-36358800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
42	chr19:36358600-36358800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
43	chr19:36358600-36358800	Enhancers	Brain Hippocampus Middle	brain
44	chr19:36358600-36358800	Enhancers	Brain Substantia Nigra	brain
45	chr19:36358600-36358800	Enhancers	Fetal Brain Female	brain
46	chr19:36358600-36359000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
47	chr19:36358600-36359000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr19:36358600-36359000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr19:36358600-36359000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr19:36358600-36359000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links