Variant report

Variant	nsv911693
Chromosome Location	chr19:39986241-40033574
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2443)
CpG islands
(count:4646)
Chromatin interactive
region (count:127)
LncRNA
region (count:20)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2443 , 50 per page) page: 1 2 3 4 5 6 7 ... 49

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:40023272-40023768	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:39997671-39997760	K562	blood:	n/a	chr19:39997715-39997730
3	ARID3A	chr19:39993486-39993643	K562	blood:	n/a	n/a
4	ARID3A	chr19:40030638-40031047	HepG2	liver:	n/a	n/a
5	ARID3A	chr19:40030742-40031218	K562	blood:	n/a	n/a
6	ATF2	chr19:39997498-39997800	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr19:40005761-40006172	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF2	chr19:40005751-40006206	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr19:40023131-40023850	GM12878	blood:	n/a	n/a
10	ATF3	chr19:39988533-39989443	A549	lung:	n/a	n/a
11	ATF3	chr19:39997401-39998267	A549	lung:	n/a	n/a
12	ATF3	chr19:40022709-40023859	A549	lung:	n/a	n/a
13	ATF3	chr19:39993364-39993846	A549	lung:	n/a	n/a
14	ATF3	chr19:40023265-40023800	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF3	chr19:40023277-40023731	GM12878	blood:	n/a	n/a
16	ATF3	chr19:39993329-39993695	K562	blood:	n/a	n/a
17	ATF3	chr19:40023409-40023642	HepG2	liver:	n/a	n/a
18	ATF3	chr19:40030409-40031125	A549	lung:	n/a	n/a
19	ATF3	chr19:39997612-39997908	K562	blood:	n/a	n/a
20	ATF3	chr19:40023352-40023663	K562	blood:	n/a	n/a
21	ATF3	chr19:40030522-40031481	A549	lung:	n/a	n/a
22	ATF3	chr19:40023311-40023712	K562	blood:	n/a	n/a
23	ATF3	chr19:39997578-39998351	A549	lung:	n/a	n/a
24	ATF3	chr19:40022437-40023864	A549	lung:	n/a	n/a
25	BACH1	chr19:40005623-40006251	H1-hESC	embryonic stem cell:	n/a	n/a
26	BACH1	chr19:40006485-40006494	H1-hESC	embryonic stem cell:	n/a	n/a
27	BACH1	chr19:40023369-40023719	K562	blood:	n/a	n/a
28	BACH1	chr19:39997961-39998087	K562	blood:	n/a	n/a
29	BACH1	chr19:39988448-39989967	H1-hESC	embryonic stem cell:	n/a	n/a
30	BACH1	chr19:39997692-39998293	H1-hESC	embryonic stem cell:	n/a	n/a
31	BACH1	chr19:40029734-40030980	H1-hESC	embryonic stem cell:	n/a	n/a
32	BACH1	chr19:39993502-39993814	H1-hESC	embryonic stem cell:	n/a	n/a
33	BACH1	chr19:40022529-40022572	K562	blood:	n/a	n/a
34	BATF	chr19:40014988-40015374	GM12878	blood:	n/a	n/a
35	BATF	chr19:40015009-40015290	GM12878	blood:	n/a	n/a
36	BCL11A	chr19:40015115-40015288	GM12878	blood:	n/a	n/a
37	BCL3	chr19:39993491-39994615	A549	lung:	n/a	n/a
38	BCL3	chr19:40005105-40006369	A549	lung:	n/a	n/a
39	BCL3	chr19:39997212-39998469	A549	lung:	n/a	chr19:39998312-39998321 chr19:39997412-39997420
40	BCL3	chr19:40023096-40023955	A549	lung:	n/a	n/a
41	BCL3	chr19:40029763-40031451	A549	lung:	n/a	chr19:40031264-40031273
42	BCL3	chr19:40022619-40023847	A549	lung:	n/a	n/a
43	BCLAF1	chr19:40030426-40030999	GM12878	blood:	n/a	n/a
44	BCLAF1	chr19:39993393-39993776	GM12878	blood:	n/a	n/a
45	BCLAF1	chr19:40023073-40023819	GM12878	blood:	n/a	n/a
46	BCLAF1	chr19:39993381-39993890	K562	blood:	n/a	n/a
47	BCLAF1	chr19:39993387-39993745	GM12878	blood:	n/a	n/a
48	BHLHE40	chr19:39997537-39998122	HepG2	liver:	n/a	n/a
49	BHLHE40	chr19:39993488-39993767	A549	lung:	n/a	n/a
50	BHLHE40	chr19:39993456-39993781	GM12878	blood:	n/a	n/a

(count:4646 , 50 per page) page: 1 2 3 4 5 6 7 ... 93

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:39989978-39990028	NHDF-neo	bronchial:	n/a
2	chr19:40032781-40032831	Jurkat	blood:	n/a
3	chr19:40030677-40030727	AG04450	lung:	fetal
4	chr19:40023715-40023765	HL-60	blood:	n/a
5	chr19:40031046-40031096	GM12891	blood:	n/a
6	chr19:40032781-40032831	IMR90	lung:	fetal
7	chr19:39998930-39998980	T-47D	breast:	n/a
8	chr19:40005649-40005699	SKMC	muscle:	n/a
9	chr19:39990055-39990105	LNCaP	prostate:	n/a
10	chr19:40023715-40023765	NB4	blood:	n/a
11	chr19:39989978-39990028	NHDF-neo	bronchial:	n/a
12	chr19:40032781-40032831	Jurkat	blood:	n/a
13	chr19:40030677-40030727	AG04450	lung:	fetal
14	chr19:40023715-40023765	HL-60	blood:	n/a
15	chr19:40031046-40031096	GM12891	blood:	n/a
16	chr19:40032781-40032831	IMR90	lung:	fetal
17	chr19:39998930-39998980	T-47D	breast:	n/a
18	chr19:40005649-40005699	SKMC	muscle:	n/a
19	chr19:39990055-39990105	LNCaP	prostate:	n/a
20	chr19:40023715-40023765	NB4	blood:	n/a
21	chr19:40023715-40023765	MCF-7	breast:	n/a
22	chr19:39989585-39989635	GM12878	blood:	n/a
23	chr19:40023459-40023509	BJ	skin:	n/a
24	chr19:39989585-39989635	ProgFib	skin:	n/a
25	chr19:40030727-40030777	GM12892	blood:	n/a
26	chr19:40005652-40005702	Hela-S3	cervix:	n/a
27	chr19:40005557-40005607	HRE	kidney:	n/a
28	chr19:40023459-40023509	SKMC	muscle:	n/a
29	chr19:40004430-40004480	BJ	skin:	n/a
30	chr19:39989412-39989462	Jurkat	blood:	n/a
31	chr19:40030727-40030777	HUVEC	blood vessel:	n/a
32	chr19:40031046-40031096	NT2-D1	testis:	n/a
33	chr19:40023503-40023553	NHDF-neo	bronchial:	n/a
34	chr19:40030677-40030727	AG10803	skin:	n/a
35	chr19:40006625-40006675	Hepatocyte	liver:	n/a
36	chr19:40004430-40004480	ovcar-3	ovarian:	n/a
37	chr19:40023494-40023544	HMEC	breast:	n/a
38	chr19:40005758-40005808	K562	blood:	n/a
39	chr19:40005727-40005777	BE2_C	brain:	n/a
40	chr19:40030677-40030727	ovcar-3	ovarian:	n/a
41	chr19:39989978-39990028	AG09309	skin:	n/a
42	chr19:40030840-40030890	A549	lung:	n/a
43	chr19:39998270-39998320	NHBE	bronchial:	n/a
44	chr19:40006625-40006675	MCF-7	breast:	n/a
45	chr19:40032781-40032831	U87	brain:	n/a
46	chr19:39989585-39989635	SAEC	small airway:	n/a
47	chr19:39993390-39993440	PFSK-1	brain:	n/a
48	chr19:40031046-40031096	AG10803	skin:	n/a
49	chr19:40005812-40005862	HRPEpiC	eye:	n/a
50	chr19:40030840-40030890	HEEpiC	esophagus:	n/a

(count:127 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr19:39934545..39937545-chr19:40023023..40025430,4	MCF-7	breast:
2	chr19:39987217..39989716-chr19:40005337..40006880,2	MCF-7	breast:
3	chr19:39921832..39923691-chr19:39996313..39998056,2	K562	blood:
4	chr19:39925162..39927908-chr19:39986730..39988641,3	K562	blood:
5	chr19:39926370..39927938-chr19:40004340..40006529,2	K562	blood:
6	chr19:40019907..40024445-chr19:40029285..40031709,4	MCF-7	breast:
7	chr19:39898397..39900372-chr19:40006194..40008008,2	K562	blood:
8	chr19:39935271..39937626-chr19:40014654..40016231,2	K562	blood:
9	chr19:39961435..39964219-chr19:39988508..39990234,2	K562	blood:
10	chr19:40019907..40024445-chr19:40029285..40031709,4	MCF-7	breast:
11	chr19:39963222..39966724-chr19:40022598..40024872,4	K562	blood:
12	chr19:40023014..40023615-chr5:65439737..65440573,2	Hela-S3	cervix:
13	chr19:40017074..40019334-chr19:40023561..40025956,4	K562	blood:
14	chr19:39988412..39989049-chr19:40030541..40031120,2	MCF-7	breast:
15	chr19:39988268..39989070-chr19:40032218..40033047,2	MCF-7	breast:
16	chr19:39987415..39989103-chr19:40024922..40026576,2	MCF-7	breast:
17	chr19:39935872..39937858-chr19:40003816..40005942,2	MCF-7	breast:
18	chr19:39923941..39928347-chr19:40027705..40030840,3	MCF-7	breast:
19	chr19:39988241..39989038-chr19:40023625..40024451,2	MCF-7	breast:
20	chr19:40010850..40013906-chr19:40015655..40017773,3	K562	blood:
21	chr19:40008391..40010217-chr19:40029919..40032075,2	K562	blood:
22	chr19:39970388..39973416-chr19:39987093..39991960,6	MCF-7	breast:
23	chr19:39897603..39899385-chr19:39988618..39990162,2	K562	blood:
24	chr19:40007684..40010217-chr19:40028799..40031419,2	K562	blood:
25	chr19:39961748..39964722-chr19:40022955..40025016,3	K562	blood:
26	chr19:39988438..39989161-chr19:40162366..40162932,2	K562	blood:
27	chr19:39995671..39997734-chr19:40002270..40005022,2	K562	blood:
28	chr19:39898615..39904728-chr19:40019936..40025504,8	K562	blood:
29	chr19:39925075..39926642-chr19:40022135..40025107,3	K562	blood:
30	chr19:40004361..40006342-chr19:40008236..40011179,2	K562	blood:
31	chr19:39925085..39928337-chr19:39992062..39995488,6	K562	blood:
32	chr19:40003141..40005134-chr19:40005498..40007914,2	K562	blood:
33	chr19:39992886..39995682-chr19:39996281..39999154,5	K562	blood:
34	chr19:40029767..40032366-chr19:40330875..40333585,2	K562	blood:
35	chr19:39988746..39992361-chr19:40020493..40024366,5	MCF-7	breast:
36	chr19:39925397..39928122-chr19:40019873..40021401,2	K562	blood:
37	chr19:39969762..39972823-chr19:40020818..40024781,5	K562	blood:
38	chr19:39970404..39973001-chr19:39996294..39998434,3	K562	blood:
39	chr19:39967682..39970182-chr19:39997915..39999826,2	K562	blood:
40	chr19:40009365..40013772-chr19:40013811..40019532,6	K562	blood:
41	chr19:40008327..40011213-chr19:40021450..40023103,2	K562	blood:
42	chr19:39925200..39927476-chr19:39987141..39989306,2	K562	blood:
43	chr19:39993528..39996626-chr19:40010694..40012599,3	K562	blood:
44	chr19:40016281..40019888-chr19:40020670..40023558,4	K562	blood:
45	chr19:40008253..40012743-chr19:40028297..40031526,4	MCF-7	breast:
46	chr19:39902534..39904778-chr19:40022453..40024067,3	MCF-7	breast:
47	chr19:39982701..39986911-chr19:39987055..39990908,4	MCF-7	breast:
48	chr19:39969549..39972807-chr19:39992061..39995133,4	K562	blood:
49	chr19:39989819..39993497-chr19:39996220..39998915,4	K562	blood:
50	chr19:39988896..39990502-chr19:39993866..39995891,2	MCF-7	breast:

(count:20 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SELV.1-3	chr19:40025103-40025661	NONHSAT066312
2	lnc-SELV.1-1	chr19:40018847-40020008	NONHSAT066308
3	lnc-EID2B-1	chr19:40011908-40011997	ucscGeneNc_uc002nwj_2
4	lnc-SELV.1-4	chr19:40033410-40034013	l_1683_chr19:40024566-40034013_testes
5	lnc-SELV.1-4	chr19:40031710-40032293	l_1683_chr19:40024566-40034013_testes
6	lnc-EID2B-1	chr19:40013150-40013270	ucscGeneNc_uc002nwj_2
7	lnc-SELV.1-2	chr19:40024974-40025062	ENSG00000269792.1
8	lnc-SELV.1-2	chr19:40023052-40023488	ENSG00000269792.1
9	lnc-EID2B-1	chr19:40015074-40015280	ucscGeneNc_uc002nwj_2
10	lnc-SELV.1-1	chr19:40019263-40019553	XLOC_013072
11	lnc-EID2-1	chr19:40021977-40022153	NONHSAT066310
12	lnc-EID2B-1	chr19:40001331-40001510	ucscGeneNc_uc002nwj_2
13	lnc-EID2B-1	chr19:40015469-40015613	ucscGeneNc_uc002nwj_2
14	lnc-SELV.1-1	chr19:40018980-40019183	XLOC_013072
15	lnc-DLL3-1	chr19:40006086-40006661	NONHSAT066307
16	lnc-EID2B-1	chr19:39998899-40000234	ucscGeneNc_uc002nwj_2
17	lnc-SELV.1-4	chr19:40024567-40024592	l_1683_chr19:40024566-40034013_testes
18	lnc-DLL3-1	chr19:40009380-40009448	NONHSAT066307
19	lnc-EID2-1	chr19:40023380-40023483	NONHSAT066310
20	lnc-SELV.1-2	chr19:40023756-40023876	ENSG00000269792.1

No data

Variant related genes	Relation type
ENSG00000186838	TF binding region
EID2	TF binding region
ENSG00000269792	TF binding region
EID2B	TF binding region
TDGF1P7	TF binding region
DLL3	TF binding region
ENSG00000186838	CpG island
EID2	CpG island
ENSG00000269792	CpG island
EID2B	CpG island
TDGF1P7	CpG island
DLL3	CpG island
ENSG00000186838	chromatin interactions
ENSG00000153914	chromatin interactions
ENSG00000196235	chromatin interactions
ENSG00000176396	chromatin interactions
ENSG00000090932	chromatin interactions
ENSG00000130755	chromatin interactions
ENSG00000105197	chromatin interactions
ENSG00000176401	chromatin interactions
ENSG00000165322	chromatin interactions
ENSG00000063322	chromatin interactions
ENSG00000128016	chromatin interactions
ENSG00000269584	chromatin interactions
ENSG00000006712	chromatin interactions
ENSG00000137776	chromatin interactions
ENSG00000115464	chromatin interactions
ENSG00000105204	chromatin interactions
ENSG00000269246	chromatin interactions
ENSG00000269792	chromatin interactions
ENSG00000105193	chromatin interactions
ENSG00000266559	chromatin interactions
ENSG00000090924	chromatin interactions
ENSG00000179134	chromatin interactions
ENSG00000105202	chromatin interactions

Extended variants
information (count: 1974 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:1974 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10425566	chr19:39986241-39986242	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs58301401	chr19:39986244-39986245	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs113698811	chr19:39986257-39986258	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs576390192	chr19:39986259-39986260	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs543473051	chr19:39986271-39986272	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs558669437	chr19:39986294-39986295	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs546688703	chr19:39986299-39986300	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs188966063	chr19:39986351-39986352	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs559981307	chr19:39986392-39986393	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs571412595	chr19:39986407-39986408	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs369853548	chr19:39986415-39986416	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs530297106	chr19:39986422-39986423	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs542512850	chr19:39986429-39986430	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs192417033	chr19:39986435-39986436	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs530567226	chr19:39986455-39986456	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs552296912	chr19:39986480-39986481	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs572117572	chr19:39986497-39986498	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs546780626	chr19:39986507-39986508	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs540735761	chr19:39986597-39986598	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs368172140	chr19:39986656-39986657	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs149238559	chr19:39986673-39986674	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs539208254	chr19:39986700-39986701	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs28708752	chr19:39986726-39986727	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs557233784	chr19:39986825-39986826	Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
25	rs3760969	chr19:39986832-39986833	Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
26	rs374785897	chr19:39986837-39986838	Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
27	rs557948831	chr19:39986872-39986873	Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
28	rs188901630	chr19:39986879-39986880	Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
29	rs566584665	chr19:39986919-39986920	Weak transcription Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs553262889	chr19:39986926-39986927	Weak transcription Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs574986693	chr19:39986929-39986930	Weak transcription Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs542149242	chr19:39986956-39986957	Weak transcription Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs564055169	chr19:39987016-39987017	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs370708159	chr19:39987059-39987060	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs10406990	chr19:39987060-39987061	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs545846288	chr19:39987104-39987105	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs59148038	chr19:39987113-39987114	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs144455347	chr19:39987137-39987138	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs528163320	chr19:39987170-39987171	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs77837600	chr19:39987176-39987177	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs368847297	chr19:39987198-39987199	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs371757167	chr19:39987199-39987200	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs35999645	chr19:39987210-39987211	Weak transcription Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs550600160	chr19:39987231-39987232	Weak transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
45	rs569162467	chr19:39987261-39987262	Weak transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
46	rs537032557	chr19:39987287-39987288	Weak transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
47	rs192161463	chr19:39987304-39987305	Weak transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
48	rs555911436	chr19:39987326-39987327	Weak transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
49	rs570533202	chr19:39987456-39987457	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
50	rs534753495	chr19:39987466-39987467	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Wilms tumour	21544195	CNVD
Mental retardation	19951919	CNVD
19q13.11 deletion syndrome	22378287	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Lung cancer	21569311	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2454 , 50 per page) page: 1 2 3 4 5 6 7 ... 50

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39972200-39986400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:39972800-39988600	Weak transcription	Right Atrium	heart
3	chr19:39973600-39988400	Weak transcription	Fetal Brain Male	brain
4	chr19:39980000-39988600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr19:39980600-39988600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:39980800-39986600	Weak transcription	NHLF	lung
7	chr19:39980800-39988200	Weak transcription	HUVEC	blood vessel
8	chr19:39980800-39988400	Weak transcription	K562	blood
9	chr19:39981000-39986600	Weak transcription	NH-A	brain
10	chr19:39981000-39988200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr19:39981000-39988400	Weak transcription	Aorta	Aorta
12	chr19:39981000-39988400	Weak transcription	GM12878-XiMat	blood
13	chr19:39981000-39988400	Weak transcription	HSMMtube	muscle
14	chr19:39981000-39988600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr19:39981000-39988600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr19:39981000-39988600	Weak transcription	Gastric	stomach
17	chr19:39981000-39988800	Weak transcription	Pancreas	Pancrea
18	chr19:39981200-39988400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr19:39981400-39986600	Weak transcription	Fetal Thymus	thymus
20	chr19:39981400-39988200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr19:39981400-39988400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr19:39981400-39988600	Weak transcription	Primary B cells from cord blood	blood
23	chr19:39981400-39988600	Weak transcription	HSMM	muscle
24	chr19:39981600-39986800	Weak transcription	Osteobl	bone
25	chr19:39981600-39988400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr19:39982800-39986600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr19:39982800-39986800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr19:39982800-39986800	Weak transcription	Adipose Nuclei	Adipose
29	chr19:39982800-39987600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr19:39983000-39986400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr19:39983000-39986400	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr19:39983000-39986600	Weak transcription	Fetal Intestine Small	intestine
33	chr19:39983000-39987600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr19:39983200-39986400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr19:39983200-39986600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr19:39983200-39986600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr19:39983200-39986600	Weak transcription	Primary T cells from cord blood	blood
38	chr19:39983200-39986600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr19:39983200-39986600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr19:39983200-39986800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr19:39983200-39986800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr19:39983200-39988000	Weak transcription	Liver	Liver
43	chr19:39983200-39988400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr19:39983200-39988400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr19:39983200-39988400	Weak transcription	Fetal Brain Female	brain
46	chr19:39983200-39988400	Weak transcription	Spleen	Spleen
47	chr19:39983200-39988600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr19:39983200-39988800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr19:39983400-39987600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr19:39983400-39988200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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