Variant report

Variant	nsv911775
Chromosome Location	chr19:42259228-42288821
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:169)
CpG islands
(count:305)
Chromatin interactive
region (count:51)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:169 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr19:42278204-42278885	HCT-116	colon:	n/a	n/a
2	CEBPB	chr19:42278289-42278831	MCF-7	breast:	n/a	n/a
3	CEBPB	chr19:42278147-42278921	HCT-116	colon:	n/a	n/a
4	CEBPB	chr19:42278385-42278849	MCF-7	breast:	n/a	n/a
5	CTCF	chr19:42255195-42260167	A549	lung:	n/a	chr19:42257276-42257294 chr19:42257278-42257299 chr19:42257279-42257292 chr19:42257279-42257288 chr19:42257281-42257291 chr19:42257279-42257292 chr19:42257277-42257293
6	CTCF	chr19:42265424-42265463	GM20000	blood:	n/a	n/a
7	CTCF	chr19:42278803-42278850	Spleen_OC	spleen:	n/a	n/a
8	CTCF	chr19:42270364-42270394	GM20000	blood:	n/a	n/a
9	CTCF	chr19:42288220-42288370	HUVEC	blood vessel:	n/a	n/a
10	CTCF	chr19:42260923-42261046	Pancreas_OC	pancreas:	n/a	n/a
11	CTCF	chr19:42268825-42268827	GM20000	blood:	n/a	n/a
12	CTCF	chr19:42288700-42288850	GM12872	blood:	n/a	n/a
13	CTCF	chr19:42288725-42290020	A549	lung:	n/a	chr19:42289658-42289676 chr19:42289653-42289674
14	CTCF	chr19:42268834-42268858	GM20000	blood:	n/a	n/a
15	CTCF	chr19:42261002-42261049	NHEK	skin:	n/a	n/a
16	E2F4	chr19:42284234-42284255	MCF10A-Er-Src	breast:	n/a	n/a
17	E2F4	chr19:42269579-42269592	MCF10A-Er-Src	breast:	n/a	n/a
18	E2F4	chr19:42287465-42287595	MCF10A-Er-Src	breast:	n/a	n/a
19	ELF1	chr19:42278186-42278882	HCT-116	colon:	n/a	n/a
20	ELF1	chr19:42278153-42278899	MCF-7	breast:	n/a	n/a
21	ELF1	chr19:42280561-42281053	MCF-7	breast:	n/a	n/a
22	ELF1	chr19:42278136-42278823	MCF-7	breast:	n/a	n/a
23	ELF1	chr19:42280511-42281134	MCF-7	breast:	n/a	n/a
24	EP300	chr19:42280520-42281083	MCF-7	breast:	n/a	n/a
25	EP300	chr19:42278327-42278975	A549	lung:	n/a	n/a
26	EP300	chr19:42278151-42278991	MCF-7	breast:	n/a	chr19:42278319-42278328
27	EP300	chr19:42278198-42278857	MCF-7	breast:	n/a	chr19:42278319-42278328
28	EP300	chr19:42278214-42278872	A549	lung:	n/a	chr19:42278319-42278328
29	FOS	chr19:42275277-42275819	MCF10A-Er-Src	breast:	n/a	n/a
30	FOS	chr19:42278310-42279728	MCF10A-Er-Src	breast:	n/a	chr19:42278612-42278620
31	FOS	chr19:42279140-42279741	MCF10A-Er-Src	breast:	n/a	n/a
32	FOS	chr19:42275318-42275790	MCF10A-Er-Src	breast:	n/a	n/a
33	FOS	chr19:42275250-42275905	MCF10A-Er-Src	breast:	n/a	n/a
34	FOS	chr19:42262876-42263013	MCF10A-Er-Src	breast:	n/a	chr19:42262926-42262934 chr19:42262929-42262937
35	FOS	chr19:42262874-42263043	MCF10A-Er-Src	breast:	n/a	chr19:42262926-42262934 chr19:42262929-42262937
36	FOS	chr19:42280007-42280365	MCF10A-Er-Src	breast:	n/a	n/a
37	FOS	chr19:42279270-42279706	MCF10A-Er-Src	breast:	n/a	n/a
38	FOS	chr19:42278437-42278837	MCF10A-Er-Src	breast:	n/a	chr19:42278612-42278620
39	FOS	chr19:42278416-42278895	MCF10A-Er-Src	breast:	n/a	chr19:42278612-42278620
40	FOS	chr19:42280003-42280243	MCF10A-Er-Src	breast:	n/a	n/a
41	FOS	chr19:42275292-42275603	MCF10A-Er-Src	breast:	n/a	n/a
42	FOS	chr19:42278296-42279725	MCF10A-Er-Src	breast:	n/a	chr19:42278612-42278620
43	FOS	chr19:42280027-42280295	MCF10A-Er-Src	breast:	n/a	n/a
44	FOSL1	chr19:42278196-42278896	HCT-116	colon:	n/a	chr19:42278612-42278620
45	FOSL1	chr19:42278100-42278995	HCT-116	colon:	n/a	chr19:42278612-42278620 chr19:42278143-42278151
46	FOSL1	chr19:42279030-42279742	HCT-116	colon:	n/a	n/a
47	FOSL2	chr19:42279242-42279748	MCF-7	breast:	n/a	n/a
48	FOSL2	chr19:42278230-42278911	MCF-7	breast:	n/a	chr19:42278612-42278620
49	FOSL2	chr19:42278246-42278893	MCF-7	breast:	n/a	chr19:42278612-42278620
50	FOXA1	chr19:42280655-42280954	T-47D	breast:	n/a	n/a

(count:305 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:42260485-42260535	SKMC	muscle:	n/a
2	chr19:42260485-42260535	NB4	blood:	n/a
3	chr19:42274924-42274974	AG09319	gingival:	n/a
4	chr19:42274924-42274974	NB4	blood:	n/a
5	chr19:42259235-42259285	GM06990	blood:	n/a
6	chr19:42274924-42274974	HUVEC	blood vessel:	n/a
7	chr19:42259395-42259445	GM12892	blood:	n/a
8	chr19:42275193-42275243	AG10803	skin:	n/a
9	chr19:42275193-42275243	GM12878	blood:	n/a
10	chr19:42260485-42260535	PrEC	prostate:	n/a
11	chr19:42260485-42260535	IMR90	lung:	fetal
12	chr19:42260485-42260535	MCF10A-Er-Src	breast:	n/a
13	chr19:42259395-42259445	HCPEpiC	choroid plexus:	n/a
14	chr19:42259235-42259285	Caco-2	colon:	n/a
15	chr19:42275193-42275243	T-47D	breast:	n/a
16	chr19:42260485-42260535	CMK	blood:	n/a
17	chr19:42274924-42274974	PFSK-1	brain:	n/a
18	chr19:42260485-42260535	NHDF-neo	bronchial:	n/a
19	chr19:42259395-42259445	HEEpiC	esophagus:	n/a
20	chr19:42260485-42260535	Hela-S3	cervix:	n/a
21	chr19:42275193-42275243	IMR90	lung:	fetal
22	chr19:42259395-42259445	ProgFib	skin:	n/a
23	chr19:42274924-42274974	AG10803	skin:	n/a
24	chr19:42259235-42259285	HEK293	kidney:	embryo
25	chr19:42275193-42275243	SK-N-SH_RA	brain:	n/a
26	chr19:42259235-42259285	NHBE	bronchial:	n/a
27	chr19:42259235-42259285	HPAEpiC	pulmonary alveolar:	n/a
28	chr19:42259235-42259285	AG10803	skin:	n/a
29	chr19:42259395-42259445	K562	blood:	n/a
30	chr19:42259235-42259285	HIPEpiC	eye:	n/a
31	chr19:42259395-42259445	Hepatocyte	liver:	n/a
32	chr19:42259395-42259445	HL-60	blood:	n/a
33	chr19:42259235-42259285	AG04450	lung:	fetal
34	chr19:42275193-42275243	HCM	heart:	n/a
35	chr19:42259395-42259445	HRE	kidney:	n/a
36	chr19:42260485-42260535	SK-N-SH_RA	brain:	n/a
37	chr19:42259235-42259285	GM12878	blood:	n/a
38	chr19:42274924-42274974	BJ	skin:	n/a
39	chr19:42259395-42259445	PANC-1	pancreas:	n/a
40	chr19:42259395-42259445	AG10803	skin:	n/a
41	chr19:42260485-42260535	HRPEpiC	eye:	n/a
42	chr19:42260485-42260535	BE2_C	brain:	n/a
43	chr19:42259235-42259285	MCF-7	breast:	n/a
44	chr19:42259235-42259285	NT2-D1	testis:	n/a
45	chr19:42260485-42260535	GM06990	blood:	n/a
46	chr19:42259235-42259285	GM19239	blood:	n/a
47	chr19:42259395-42259445	SKMC	muscle:	n/a
48	chr19:42259395-42259445	HAEpiC	amniotic membrane:	n/a
49	chr19:42259235-42259285	BE2_C	brain:	n/a
50	chr19:42274924-42274974	HEEpiC	esophagus:	n/a

(count:51 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr19:42286292..42289272-chr19:42318384..42321210,2	K562	blood:
2	chr19:42283769..42285761-chr19:42286969..42288964,2	MCF-7	breast:
3	chr19:42277316..42282861-chr19:42295271..42298784,10	MCF-7	breast:
4	chr19:42258691..42261541-chr19:42266017..42268400,4	MCF-7	breast:
5	chr19:42256268..42257789-chr19:42259874..42261531,2	MCF-7	breast:
6	chr19:42280334..42281890-chr19:42288112..42290516,2	MCF-7	breast:
7	chr19:42264279..42265864-chr19:42267759..42270746,2	MCF-7	breast:
8	chr19:42259394..42260982-chr19:42261477..42263046,2	MCF-7	breast:
9	chr19:42255651..42257648-chr19:42288124..42290756,2	MCF-7	breast:
10	chr19:42261241..42262900-chr19:42275127..42276730,2	MCF-7	breast:
11	chr19:42278432..42280724-chr19:42363610..42365234,2	MCF-7	breast:
12	chr19:42278941..42284055-chr19:42287718..42293319,7	MCF-7	breast:
13	chr19:42284065..42287581-chr19:42289073..42291292,3	MCF-7	breast:
14	chr19:42238849..42240375-chr19:42277307..42280132,2	MCF-7	breast:
15	chr19:42253200..42254991-chr19:42287539..42289133,2	MCF-7	breast:
16	chr19:42270435..42273069-chr19:42278370..42280159,2	MCF-7	breast:
17	chr19:42283769..42285761-chr19:42286969..42288964,2	MCF-7	breast:
18	chr19:42252191..42260165-chr19:42275924..42285275,20	MCF-7	breast:
19	chr19:42267949..42271165-chr19:42271348..42273565,4	MCF-7	breast:
20	chr19:42211076..42212814-chr19:42288522..42291440,2	MCF-7	breast:
21	chr19:42262778..42266389-chr19:42276917..42279036,3	MCF-7	breast:
22	chr19:42280334..42281890-chr19:42288112..42290516,2	MCF-7	breast:
23	chr19:42259424..42262726-chr19:42264710..42268289,4	K562	blood:
24	chr19:42250749..42252304-chr19:42286973..42289582,3	MCF-7	breast:
25	chr19:42256878..42257460-chr19:42288323..42288994,2	MCF-7	breast:
26	chr19:42259394..42260982-chr19:42261477..42263046,2	MCF-7	breast:
27	chr19:42274897..42278651-chr19:42287593..42289573,3	MCF-7	breast:
28	chr19:42271676..42273430-chr19:42276461..42278418,2	MCF-7	breast:
29	chr19:42146223..42148129-chr19:42277106..42278816,2	MCF-7	breast:
30	chr19:42281683..42284072-chr19:42363148..42365714,2	MCF-7	breast:
31	chr19:42264279..42265864-chr19:42267759..42270746,2	MCF-7	breast:
32	chr19:42256872..42257731-chr19:42277925..42278830,2	MCF-7	breast:
33	chr19:42262778..42266389-chr19:42276917..42279036,3	MCF-7	breast:
34	chr19:42278093..42278816-chr19:42296664..42297371,2	MCF-7	breast:
35	chr19:42259424..42262726-chr19:42264710..42268289,4	K562	blood:
36	chr19:42238387..42240007-chr19:42287933..42289826,2	MCF-7	breast:
37	chr19:42271676..42273430-chr19:42276461..42278418,2	MCF-7	breast:
38	chr19:42254797..42261680-chr19:42284783..42292674,12	MCF-7	breast:
39	chr19:42278812..42280999-chr4:184365517..184367399,2	MCF-7	breast:
40	chr19:42270435..42273069-chr19:42278370..42280159,2	MCF-7	breast:
41	chr19:42254797..42261680-chr19:42284783..42292674,12	MCF-7	breast:
42	chr19:42265754..42267325-chr19:42289223..42291890,2	K562	blood:
43	chr19:42258231..42260656-chr19:42288307..42290436,3	MCF-7	breast:
44	chr19:42250551..42264892-chr19:42273965..42282481,23	MCF-7	breast:
45	chr19:42267949..42271165-chr19:42271348..42273565,4	MCF-7	breast:
46	chr19:42261241..42262900-chr19:42275127..42276730,2	MCF-7	breast:
47	chr19:42258418..42261395-chr19:42263333..42266210,2	K562	blood:
48	chr19:42250343..42251080-chr19:42288592..42289100,2	MCF-7	breast:
49	chr19:42257939..42260578-chr19:42260800..42262480,2	K562	blood:
50	chr19:42208175..42212316-chr19:42277076..42281781,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LYPD4-3	chr19:42261806-42261989	ENSG00000268833.1

No data

Variant related genes	Relation type
CEACAM6	TF binding region
CEACAM6	CpG island
ENSG00000168564	chromatin interactions
ENSG00000267881	chromatin interactions
ENSG00000007306	chromatin interactions
ENSG00000105388	chromatin interactions
ENSG00000105372	chromatin interactions
ENSG00000269354	chromatin interactions
ENSG00000268833	chromatin interactions
ENSG00000086548	chromatin interactions

Extended variants
information (count: 1198 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:1198 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3829668	chr19:42259228-42259229	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs566380664	chr19:42259230-42259231	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs369078455	chr19:42259231-42259232	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs28372847	chr19:42259234-42259235	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs111976649	chr19:42259236-42259237	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs550182700	chr19:42259311-42259312	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs565023392	chr19:42259321-42259322	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs532483473	chr19:42259358-42259359	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs547143039	chr19:42259431-42259432	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs375011788	chr19:42259444-42259445	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs184076382	chr19:42259544-42259545	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs373803422	chr19:42259568-42259569	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs139021880	chr19:42259574-42259575	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs141906944	chr19:42259582-42259583	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs188386429	chr19:42259588-42259589	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs199578274	chr19:42259592-42259593	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs370563504	chr19:42259607-42259608	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs372058531	chr19:42259623-42259624	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs547901632	chr19:42259629-42259630	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs376647335	chr19:42259655-42259656	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs535508283	chr19:42259658-42259659	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs538677969	chr19:42259737-42259738	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs72480766	chr19:42259744-42259745	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs536628621	chr19:42259928-42259929	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs192667906	chr19:42259950-42259951	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs571846384	chr19:42259961-42259962	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs539346660	chr19:42259962-42259963	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs554363714	chr19:42260020-42260021	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs146107557	chr19:42260031-42260032	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs376779394	chr19:42260042-42260043	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs534127024	chr19:42260063-42260064	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs543117247	chr19:42260105-42260106	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs554745235	chr19:42260121-42260122	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs79192941	chr19:42260128-42260129	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs184633710	chr19:42260143-42260144	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs113669332	chr19:42260194-42260195	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs532233130	chr19:42260230-42260231	Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs540940420	chr19:42260270-42260271	Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs559092491	chr19:42260299-42260300	Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs529816361	chr19:42260317-42260318	Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs548017775	chr19:42260330-42260331	Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs111779348	chr19:42260362-42260363	Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs569644165	chr19:42260375-42260376	Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs113104309	chr19:42260378-42260379	Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs530680057	chr19:42260393-42260394	Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs4060857	chr19:42260395-42260396	Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs111905584	chr19:42260420-42260421	Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs368621450	chr19:42260458-42260459	Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs115218253	chr19:42260459-42260460	Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs539304904	chr19:42260471-42260472	Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Genital abnormality	22378287	CNVD
Hypospadia	22378287	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Astrocytoma	22246337	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:247 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42254400-42260200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr19:42257600-42262600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:42258000-42262000	Weak transcription	Stomach Mucosa	stomach
4	chr19:42258000-42262400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr19:42258400-42259400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr19:42258800-42259800	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr19:42259000-42259400	Enhancers	Colonic Mucosa	Colon
8	chr19:42259000-42259400	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr19:42259000-42259600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr19:42259200-42259400	Weak transcription	Fetal Intestine Large	intestine
11	chr19:42259200-42259800	Enhancers	Primary B cells from cord blood	blood
12	chr19:42259200-42259800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr19:42259200-42260400	Enhancers	Fetal Intestine Small	intestine
14	chr19:42259200-42263000	Active TSS	Esophagus	oesophagus
15	chr19:42259400-42259600	Enhancers	Fetal Intestine Large	intestine
16	chr19:42259400-42259800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
17	chr19:42259400-42260000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
18	chr19:42259400-42262800	Active TSS	Colonic Mucosa	Colon
19	chr19:42259600-42261200	Weak transcription	Fetal Intestine Large	intestine
20	chr19:42259600-42262600	Active TSS	Lung	lung
21	chr19:42259800-42260000	Active TSS	Rectal Mucosa Donor 31	rectum
22	chr19:42259800-42261800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr19:42260000-42260200	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr19:42260000-42260200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
25	chr19:42260200-42260400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr19:42260200-42260600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr19:42260200-42262400	Active TSS	Rectal Mucosa Donor 31	rectum
28	chr19:42260400-42260800	Weak transcription	Fetal Intestine Small	intestine
29	chr19:42260400-42262800	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr19:42260600-42261000	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr19:42260800-42262600	Enhancers	Fetal Intestine Small	intestine
32	chr19:42261000-42262600	Enhancers	Duodenum Mucosa	Duodenum
33	chr19:42261000-42263000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr19:42261200-42262200	Enhancers	Fetal Intestine Large	intestine
35	chr19:42261800-42262400	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr19:42261800-42263200	Enhancers	Primary hematopoietic stem cells	blood
37	chr19:42262000-42262400	Enhancers	Stomach Mucosa	stomach
38	chr19:42262000-42266600	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr19:42262400-42262600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr19:42262400-42262600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr19:42262400-42262800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr19:42262400-42263600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr19:42262600-42262800	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr19:42262600-42263000	Flanking Active TSS	Lung	lung
45	chr19:42262600-42263400	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr19:42262600-42263600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr19:42262600-42270400	Weak transcription	Fetal Intestine Small	intestine
48	chr19:42262800-42265200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr19:42262800-42276600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr19:42263000-42263200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links