Variant report
Variant | nsv911954 |
---|---|
Chromosome Location | chr19:43374601-43794586 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:5773)
- CpG islands (count:3051)
- Chromatin interactive region (count:6)
- LncRNA region (count:61)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ATF1 | chr19:43779068-43779071 | K562 | blood: | n/a | n/a |
2 | ATF1 | chr19:43733581-43733686 | K562 | blood: | n/a | n/a |
3 | ATF3 | chr19:43686016-43686763 | A549 | lung: | n/a | n/a |
4 | BATF | chr19:43552186-43552537 | GM12878 | blood: | n/a | chr19:43552319-43552330 |
5 | BATF | chr19:43552261-43552460 | GM12878 | blood: | n/a | chr19:43552319-43552330 |
6 | BATF | chr19:43775309-43775522 | GM12878 | blood: | n/a | n/a |
7 | BATF | chr19:43613006-43613315 | GM12878 | blood: | n/a | chr19:43613110-43613121 |
8 | BATF | chr19:43591924-43592150 | GM12878 | blood: | n/a | n/a |
9 | BATF | chr19:43711409-43711658 | GM12878 | blood: | n/a | n/a |
10 | BATF | chr19:43442962-43443231 | GM12878 | blood: | n/a | n/a |
11 | BATF | chr19:43738081-43738296 | GM12878 | blood: | n/a | chr19:43738185-43738196 |
12 | BATF | chr19:43588401-43588710 | GM12878 | blood: | n/a | n/a |
13 | BATF | chr19:43692257-43692526 | GM12878 | blood: | n/a | n/a |
14 | BATF | chr19:43692397-43692675 | GM12878 | blood: | n/a | n/a |
15 | BCL3 | chr19:43402518-43403428 | A549 | lung: | n/a | n/a |
16 | BHLHE40 | chr19:43733601-43733620 | K562 | blood: | n/a | n/a |
17 | BHLHE40 | chr19:43582147-43582203 | K562 | blood: | n/a | n/a |
18 | BHLHE40 | chr19:43709323-43709343 | K562 | blood: | n/a | n/a |
19 | BHLHE40 | chr19:43427453-43427512 | GM12878 | blood: | n/a | n/a |
20 | BHLHE40 | chr19:43385480-43385517 | K562 | blood: | n/a | n/a |
21 | BRCA1 | chr19:43436723-43436914 | Hela-S3 | cervix: | n/a | n/a |
22 | BRCA1 | chr19:43624776-43624937 | Hela-S3 | cervix: | n/a | n/a |
23 | BRCA1 | chr19:43525934-43526309 | Hela-S3 | cervix: | n/a | n/a |
24 | BRCA1 | chr19:43769426-43769782 | Hela-S3 | cervix: | n/a | n/a |
25 | CBX3 | chr19:43385431-43385838 | K562 | blood: | n/a | n/a |
26 | CBX3 | chr19:43775261-43775711 | HCT-116 | colon: | n/a | n/a |
27 | CBX3 | chr19:43775276-43775644 | K562 | blood: | n/a | n/a |
28 | CBX3 | chr19:43385505-43385738 | K562 | blood: | n/a | n/a |
29 | CEBPB | chr19:43560474-43560633 | A549 | lung: | n/a | chr19:43560568-43560581 chr19:43560568-43560579 chr19:43560568-43560581 |
30 | CEBPB | chr19:43564423-43564649 | IMR90 | lung: | n/a | n/a |
31 | CEBPB | chr19:43685962-43686735 | A549 | lung: | n/a | n/a |
32 | CEBPB | chr19:43618826-43619087 | IMR90 | lung: | n/a | n/a |
33 | CEBPB | chr19:43562943-43563108 | MCF-7 | breast: | n/a | n/a |
34 | CEBPB | chr19:43436540-43437331 | IMR90 | lung: | n/a | n/a |
35 | CEBPB | chr19:43510075-43510341 | Hela-S3 | cervix: | n/a | chr19:43510191-43510202 |
36 | CEBPB | chr19:43496316-43496617 | A549 | lung: | n/a | n/a |
37 | CEBPB | chr19:43379145-43379767 | IMR90 | lung: | n/a | n/a |
38 | CEBPB | chr19:43379142-43379806 | Hela-S3 | cervix: | n/a | n/a |
39 | CEBPB | chr19:43403099-43403104 | A549 | lung: | n/a | n/a |
40 | CEBPB | chr19:43786125-43786327 | Hela-S3 | cervix: | n/a | n/a |
41 | CEBPB | chr19:43525813-43526656 | Hela-S3 | cervix: | n/a | n/a |
42 | CEBPB | chr19:43500870-43501012 | IMR90 | lung: | n/a | n/a |
43 | CEBPB | chr19:43436570-43436856 | A549 | lung: | n/a | n/a |
44 | CEBPB | chr19:43525800-43526621 | IMR90 | lung: | n/a | n/a |
45 | CEBPB | chr19:43496486-43496642 | K562 | blood: | n/a | n/a |
46 | CEBPB | chr19:43517268-43517468 | HepG2 | liver: | n/a | chr19:43517348-43517359 |
47 | CEBPB | chr19:43685985-43686627 | IMR90 | lung: | n/a | n/a |
48 | CEBPB | chr19:43525986-43526150 | A549 | lung: | n/a | n/a |
49 | CEBPB | chr19:43573042-43573317 | HepG2 | liver: | n/a | chr19:43573163-43573174 |
50 | CEBPB | chr19:43482706-43482918 | Hela-S3 | cervix: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:43531821-43531871 | PFSK-1 | brain: | n/a |
2 | chr19:43531821-43531871 | PFSK-1 | brain: | n/a |
3 | chr19:43691930-43691980 | H1-hESC | embryonic stem cell: | embryo |
4 | chr19:43385100-43385150 | IMR90 | lung: | fetal |
5 | chr19:43588055-43588105 | IMR90 | lung: | fetal |
6 | chr19:43690996-43691046 | HL-60 | blood: | n/a |
7 | chr19:43421584-43421634 | BJ | skin: | n/a |
8 | chr19:43384780-43384830 | HRCEpiC | kidney: | n/a |
9 | chr19:43423119-43423169 | HAEpiC | amniotic membrane: | n/a |
10 | chr19:43680072-43680122 | HUVEC | blood vessel: | n/a |
11 | chr19:43410455-43410505 | GM12891 | blood: | n/a |
12 | chr19:43528994-43529044 | HNPCEpiC | eye: | n/a |
13 | chr19:43774921-43774971 | A549 | lung: | n/a |
14 | chr19:43709754-43709804 | HMEC | breast: | n/a |
15 | chr19:43442484-43442534 | HRCEpiC | kidney: | n/a |
16 | chr19:43383799-43383849 | SAEC | small airway: | n/a |
17 | chr19:43442804-43442854 | GM12891 | blood: | n/a |
18 | chr19:43423265-43423315 | AG09309 | skin: | n/a |
19 | chr19:43531770-43531820 | NHBE | bronchial: | n/a |
20 | chr19:43711064-43711114 | SKMC | muscle: | n/a |
21 | chr19:43442809-43442859 | NH-A | brain: | n/a |
22 | chr19:43442804-43442854 | LNCaP | prostate: | n/a |
23 | chr19:43588055-43588105 | GM12878 | blood: | n/a |
24 | chr19:43709832-43709882 | HNPCEpiC | eye: | n/a |
25 | chr19:43588055-43588105 | BE2_C | brain: | n/a |
26 | chr19:43680072-43680122 | AG09309 | skin: | n/a |
27 | chr19:43385047-43385097 | PrEC | prostate: | n/a |
28 | chr19:43588069-43588119 | GM12878 | blood: | n/a |
29 | chr19:43410455-43410505 | HRPEpiC | eye: | n/a |
30 | chr19:43588069-43588119 | SK-N-MC | brain: | n/a |
31 | chr19:43530536-43530586 | NT2-D1 | testis: | n/a |
32 | chr19:43588055-43588105 | HMEC | breast: | n/a |
33 | chr19:43385047-43385097 | K562 | blood: | n/a |
34 | chr19:43709832-43709882 | Hela-S3 | cervix: | n/a |
35 | chr19:43528994-43529044 | BE2_C | brain: | n/a |
36 | chr19:43587500-43587550 | HAEpiC | amniotic membrane: | n/a |
37 | chr19:43709654-43709704 | HepG2 | liver: | n/a |
38 | chr19:43423119-43423169 | HCT-116 | colon: | n/a |
39 | chr19:43683698-43683748 | AG10803 | skin: | n/a |
40 | chr19:43690996-43691046 | HEK293 | kidney: | embryo |
41 | chr19:43442809-43442859 | AG04449 | skin: | fetal |
42 | chr19:43423176-43423226 | BJ | skin: | n/a |
43 | chr19:43709654-43709704 | SK-N-MC | brain: | n/a |
44 | chr19:43441294-43441344 | U87 | brain: | n/a |
45 | chr19:43774921-43774971 | HepG2 | liver: | n/a |
46 | chr19:43709832-43709882 | BJ | skin: | n/a |
47 | chr19:43673501-43673551 | NHDF-neo | bronchial: | n/a |
48 | chr19:43421584-43421634 | T-47D | breast: | n/a |
49 | chr19:43588069-43588119 | H1-hESC | embryonic stem cell: | embryo |
50 | chr19:43421584-43421634 | Hepatocyte | liver: | n/a |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:43608137..43608719-chr19:43820621..43821519,2 | MCF-7 | breast: | |
2 | chr19:43523469..43524084-chr19:43531918..43532440,2 | MCF-7 | breast: | |
3 | chr19:43265768..43266290-chr19:43769932..43770473,2 | MCF-7 | breast: | |
4 | chr19:43531581..43532101-chr2:1136088..1136613,2 | MCF-7 | breast: | |
5 | chr19:43678340..43681333-chr19:43698109..43700078,2 | MCF-7 | breast: | |
6 | chr19:43523469..43524084-chr19:43531918..43532440,2 | MCF-7 | breast: |
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-PSG2-4 | chr19:43521383-43521753 | NONHSAT066578 |
2 | lnc-PSG9-2 | chr19:43762354-43762608 | NONHSAT066592 |
3 | lnc-PSG11-1 | chr19:43544526-43544780 | NONHSAT066579 |
4 | lnc-PSG2-2 | chr19:43576503-43576781 | NONHSAT066580 |
5 | lnc-CD177-1 | chr19:43657431-43657763 | ENSG00000227606.1 |
6 | lnc-PSG6-1 | chr19:43429925-43431729 | NONHSAT066573 |
7 | lnc-PSG2-4 | chr19:43522922-43523199 | NONHSAT066578 |
8 | lnc-PSG4-2 | chr19:43684499-43684748 | NONHSAT066587 |
9 | lnc-PSG2-1 | chr19:43585939-43586423 | NONHSAT066581 |
10 | lnc-PSG2-5 | chr19:43514422-43514579 | NONHSAT066577 |
11 | lnc-PSG6-1 | chr19:43428286-43428976 | NONHSAT066573 |
12 | lnc-PSG9-2 | chr19:43752643-43752798 | NONHSAT066591 |
13 | lnc-CD177-1 | chr19:43658863-43659311 | ENSG00000227606.1 |
14 | lnc-PSG5-1 | chr19:43696890-43697540 | NONHSAT066588 |
15 | lnc-PSG5-1 | chr19:43698492-43699038 | NONHSAT066588 |
16 | lnc-PSG9-2 | chr19:43724140-43724394 | NONHSAT066591 |
17 | lnc-PSG9-2 | chr19:43724783-43725023 | NONHSAT066593 |
18 | lnc-PSG2-1 | chr19:43586658-43586820 | NONHSAT066581 |
19 | lnc-PSG2-2 | chr19:43575923-43576106 | NONHSAT066580 |
20 | lnc-PSG6-1 | chr19:43429925-43430179 | NR_073194 |
21 | lnc-PSG9-2 | chr19:43715943-43716627 | NONHSAT066591 |
22 | lnc-PSG9-2 | chr19:43727043-43727110 | NONHSAT066591 |
23 | lnc-PSG11-1 | chr19:43545168-43545400 | NONHSAT066579 |
24 | lnc-PSG2-5 | chr19:43519268-43519426 | NONHSAT066577 |
25 | lnc-PSG9-2 | chr19:43724140-43724394 | NONHSAT066593 |
26 | lnc-PSG4-3 | chr19:43672274-43672355 | NONHSAT066586 |
27 | lnc-PSG2-3 | chr19:43601248-43601512 | NONHSAT066582 |
28 | lnc-PSG9-2 | chr19:43719405-43719531 | NONHSAT066591 |
29 | lnc-PSG2-5 | chr19:43511982-43512194 | NONHSAT066576 |
30 | lnc-PSG2-3 | chr19:43600608-43600855 | NONHSAT066582 |
31 | lnc-CD177-1 | chr19:43657665-43657763 | ENSG00000227606.1 |
32 | lnc-PSG9-2 | chr19:43734076-43734177 | NONHSAT066591 |
33 | lnc-PSG6-2 | chr19:43454299-43454539 | NONHSAT066575 |
34 | lnc-PSG6-1 | chr19:43439556-43439921 | NR_073194 |
35 | lnc-PSG4-1 | chr19:43707241-43708403 | NONHSAT066590 |
36 | lnc-PSG6-1 | chr19:43428284-43428976 | NR_073194 |
37 | lnc-PSG6-3 | chr19:43372908-43374797 | NONHSAT066572 |
38 | lnc-PSG6-1 | chr19:43430590-43430868 | NR_073194 |
39 | lnc-PSG9-2 | chr19:43737376-43737446 | NONHSAT066591 |
40 | lnc-PSG9-2 | chr19:43728324-43728464 | NONHSAT066591 |
41 | lnc-PSG11-1 | chr19:43540021-43540112 | NONHSAT066579 |
42 | lnc-PSG6-2 | chr19:43453655-43453909 | NONHSAT066575 |
43 | lnc-PSG6-1 | chr19:43441165-43441330 | NR_073194 |
44 | lnc-PSG6-1 | chr19:43441165-43441330 | NONHSAT066574 |
45 | lnc-PSG2-5 | chr19:43514110-43514858 | NONHSAT066576 |
46 | lnc-CD177-1 | chr19:43659324-43659477 | ENSG00000227606.1 |
47 | lnc-PSG4-3 | chr19:43674207-43674717 | NONHSAT066586 |
48 | lnc-PSG4-1 | chr19:43710321-43711451 | NONHSAT066590 |
49 | lnc-PSG6-1 | chr19:43433594-43433872 | NR_073194 |
50 | lnc-PSG9-2 | chr19:43763009-43764898 | NONHSAT066592 |
No data |
No data |
Variant related genes | Relation type |
---|---|
CEACAMP7 | TF binding region |
CEACAMP9 | TF binding region |
PSG5 | TF binding region |
PSG11 | TF binding region |
PSG6 | TF binding region |
CEACAMP10 | TF binding region |
PSG9 | TF binding region |
PSG4 | TF binding region |
CEACAMP8 | TF binding region |
PSG1 | TF binding region |
CEACAMP11 | TF binding region |
PSG2 | TF binding region |
ENSG00000227606 | TF binding region |
PSG7 | TF binding region |
CEACAMP7 | CpG island |
CEACAMP9 | CpG island |
PSG5 | CpG island |
PSG11 | CpG island |
PSG6 | CpG island |
CEACAMP10 | CpG island |
PSG9 | CpG island |
PSG4 | CpG island |
CEACAMP8 | CpG island |
PSG1 | CpG island |
CEACAMP11 | CpG island |
PSG2 | CpG island |
ENSG00000227606 | CpG island |
PSG7 | CpG island |
ENSG00000243137 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs1988065 | chr19:43374601-43374602 | Weak transcription Strong transcription | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs113537262 | chr19:43374618-43374619 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
3 | rs150247538 | chr19:43374619-43374620 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
4 | rs192686295 | chr19:43374669-43374670 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
5 | rs556727526 | chr19:43374675-43374676 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
6 | rs577073786 | chr19:43374692-43374693 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
7 | rs185515999 | chr19:43374701-43374702 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
8 | rs553351714 | chr19:43374722-43374723 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
9 | rs573118815 | chr19:43374723-43374724 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
10 | rs542223809 | chr19:43374729-43374730 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
11 | rs562213699 | chr19:43374738-43374739 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
12 | rs190478383 | chr19:43374745-43374746 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
13 | rs1985620 | chr19:43374753-43374754 | Weak transcription Strong transcription | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
14 | rs374980285 | chr19:43374759-43374760 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
15 | rs572833508 | chr19:43374809-43374810 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs546018812 | chr19:43374812-43374813 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs546945086 | chr19:43374815-43374816 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs567139510 | chr19:43374824-43374825 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs367611560 | chr19:43374862-43374863 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs371327915 | chr19:43374868-43374869 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs138891002 | chr19:43374869-43374870 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs547778311 | chr19:43374872-43374873 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs564227954 | chr19:43374890-43374891 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs567854510 | chr19:43374896-43374897 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs61041467 | chr19:43374905-43374906 | Weak transcription Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
26 | rs185171739 | chr19:43374915-43374916 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs570523883 | chr19:43374931-43374932 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs188741498 | chr19:43374952-43374953 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs149388128 | chr19:43374958-43374959 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs573091580 | chr19:43374961-43374962 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs10401873 | chr19:43374968-43374969 | Weak transcription Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
32 | rs376706949 | chr19:43374976-43374977 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs181212768 | chr19:43374986-43374987 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs185435999 | chr19:43375008-43375009 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs544689843 | chr19:43375009-43375010 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs370042952 | chr19:43375024-43375025 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs189842123 | chr19:43375031-43375032 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs578135955 | chr19:43375038-43375039 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs543362817 | chr19:43375053-43375054 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs375631940 | chr19:43375055-43375056 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs182061085 | chr19:43375070-43375071 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs375651546 | chr19:43375128-43375129 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs187185149 | chr19:43375160-43375161 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs547792297 | chr19:43375220-43375221 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs561297062 | chr19:43375233-43375234 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs561959323 | chr19:43375239-43375240 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs530539918 | chr19:43375240-43375241 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs529965510 | chr19:43375241-43375242 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs111912306 | chr19:43375242-43375243 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs550225241 | chr19:43375244-43375245 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Myelodysplastic syndrome | 17634407 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Cancer | 20164919 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Prostate cancer | 18632612 | CNVD |
Autism | 22495311 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Congenital nephrotic syndrome | 18421352 | CNVD |
Astrocytoma | 17934521 | CNVD |
Leukemia | 17361228 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Breast cancer | 21858162 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioma | 21971842 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
renal disease | 20603712 | CNVD |
Salivary gland adenoid cystic carcinoma | 17545515 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Breast cancer | 21364760 | CNVD |
Invasive pancreatic ductal carcinoma | 18765526 | CNVD |
Rhabdomyosarcoma | 16790082 | CNVD |
Chordoma | 18071362 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Bladder cancer | 21909424 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Gastric cancer | 18160780 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Basal cell lymphoma | 19029149 | CNVD |
Breast cancer | 20409316 | CNVD |
Diffuse large b-cell lymphoma | 19029149 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Lung cancer | 18438408 | CNVD |
Ovarian clear cell carcinoma | 19293255 | CNVD |
Astrocytoma | 22246337 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Breast cancer | 22522925 | CNVD |
Breast cancer | 21509527 | CNVD |
Cancer | 20164920 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Ependymoma | 20639864 | CNVD |
Autism | 19492091 | CNVD |
Ovarian cancer | 20800559 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 16272173 | CNVD |
Spondylocostal dysostosis | 21085971 | CNVD |
Nicotine metabolism | 21956041 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Breast cancer | 17133270 | CNVD |
Colorectal cancer | 20459617 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Melanoma | 20877625 | CNVD |
Ovarian cancer | 21240255 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Primary Severe Spermatogenic Failure | 20378930 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:43357600-43378800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr19:43374000-43375400 | Strong transcription | Placenta | Placenta |
3 | chr19:43374600-43378000 | Weak transcription | NHDF-Ad | bronchial |
4 | chr19:43375400-43376800 | Genic enhancers | Placenta | Placenta |
5 | chr19:43376200-43376800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
6 | chr19:43376800-43377000 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
7 | chr19:43376800-43377000 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
8 | chr19:43376800-43378000 | Strong transcription | Placenta | Placenta |
9 | chr19:43376800-43380200 | Enhancers | HMEC | breast |
10 | chr19:43377000-43378400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
11 | chr19:43377200-43378400 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
12 | chr19:43378000-43378200 | Transcr. at gene 5' and 3' | Placenta | Placenta |
13 | chr19:43378000-43380600 | Enhancers | NHDF-Ad | bronchial |
14 | chr19:43378200-43380000 | Active TSS | Placenta | Placenta |
15 | chr19:43378200-43380000 | Enhancers | NHEK | skin |
16 | chr19:43378400-43381600 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
17 | chr19:43378400-43381600 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
18 | chr19:43378400-43382200 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
19 | chr19:43378600-43378800 | Enhancers | Muscle Satellite Cultured Cells | -- |
20 | chr19:43378600-43379000 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
21 | chr19:43378600-43381600 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
22 | chr19:43378600-43382200 | Enhancers | Foreskin Fibroblast Primary Cells skin02 | Skin |
23 | chr19:43378800-43379200 | Flanking Active TSS | Muscle Satellite Cultured Cells | -- |
24 | chr19:43378800-43379600 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
25 | chr19:43378800-43380200 | Enhancers | A549 | lung |
26 | chr19:43378800-43380600 | Enhancers | Hela-S3 | cervix |
27 | chr19:43378800-43381000 | Enhancers | NH-A | brain |
28 | chr19:43378800-43381400 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
29 | chr19:43378800-43381400 | Enhancers | Osteobl | bone |
30 | chr19:43378800-43381600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
31 | chr19:43378800-43381600 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
32 | chr19:43378800-43381600 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
33 | chr19:43378800-43381600 | Enhancers | HSMM | muscle |
34 | chr19:43378800-43382200 | Enhancers | NHLF | lung |
35 | chr19:43379000-43379200 | Enhancers | Colon Smooth Muscle | Colon |
36 | chr19:43379000-43379200 | Enhancers | Rectal Smooth Muscle | rectum |
37 | chr19:43379000-43380000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
38 | chr19:43379200-43380200 | Weak transcription | Rectal Smooth Muscle | rectum |
39 | chr19:43379200-43381600 | Enhancers | Muscle Satellite Cultured Cells | -- |
40 | chr19:43379200-43381600 | Enhancers | HSMMtube | muscle |
41 | chr19:43379400-43380200 | Weak transcription | Colon Smooth Muscle | Colon |
42 | chr19:43379400-43381400 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
43 | chr19:43379600-43380200 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
44 | chr19:43379800-43380400 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
45 | chr19:43380000-43380200 | Flanking Active TSS | Placenta | Placenta |
46 | chr19:43380000-43380400 | Flanking Active TSS | NHEK | skin |
47 | chr19:43380000-43382400 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
48 | chr19:43380200-43380400 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
49 | chr19:43380200-43380600 | Enhancers | Placenta Amnion | Placenta Amnion |
50 | chr19:43380200-43380600 | Flanking Active TSS | HMEC | breast |