Variant report

Variant	nsv912301
Chromosome Location	chr19:52835210-52914233
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1035)
CpG islands
(count:3238)
Chromatin interactive
region (count:37)
LncRNA
region (count:43)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1035 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:52900846-52901131	HepG2	liver:	n/a	n/a
2	ATF1	chr19:52852027-52852098	K562	blood:	n/a	n/a
3	ATF1	chr19:52851245-52851421	K562	blood:	n/a	n/a
4	BACH1	chr19:52873031-52873715	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr19:52839357-52840089	H1-hESC	embryonic stem cell:	n/a	n/a
6	BCLAF1	chr19:52900832-52901375	GM12878	blood:	n/a	n/a
7	BHLHE40	chr19:52872998-52873673	GM12878	blood:	n/a	chr19:52873453-52873469
8	BHLHE40	chr19:52846961-52846970	GM12878	blood:	n/a	n/a
9	BHLHE40	chr19:52900942-52901324	GM12878	blood:	n/a	n/a
10	CBX3	chr19:52846823-52847179	K562	blood:	n/a	n/a
11	CBX3	chr19:52900872-52901266	K562	blood:	n/a	n/a
12	CBX3	chr19:52900945-52901284	K562	blood:	n/a	n/a
13	CEBPB	chr19:52854850-52855103	H1-hESC	embryonic stem cell:	n/a	n/a
14	CEBPB	chr19:52840199-52840417	H1-hESC	embryonic stem cell:	n/a	n/a
15	CEBPB	chr19:52841319-52841464	A549	lung:	n/a	n/a
16	CEBPB	chr19:52900506-52900786	HepG2	liver:	n/a	chr19:52900622-52900635 chr19:52900622-52900633
17	CEBPB	chr19:52840123-52840557	IMR90	lung:	n/a	n/a
18	CEBPB	chr19:52900477-52900699	H1-hESC	embryonic stem cell:	n/a	chr19:52900622-52900635 chr19:52900622-52900633
19	CEBPB	chr19:52900001-52900200	HepG2	liver:	n/a	chr19:52900142-52900153
20	CHD1	chr19:52901004-52901064	GM12878	blood:	n/a	n/a
21	CHD1	chr19:52839869-52839873	H1-hESC	embryonic stem cell:	n/a	n/a
22	CHD1	chr19:52873085-52873535	GM12878	blood:	n/a	n/a
23	CHD1	chr19:52900901-52901048	H1-hESC	embryonic stem cell:	n/a	n/a
24	CHD2	chr19:52900605-52900664	GM12878	blood:	n/a	n/a
25	CHD2	chr19:52873042-52873568	GM12878	blood:	n/a	n/a
26	CHD2	chr19:52900941-52901401	GM12878	blood:	n/a	n/a
27	CHD2	chr19:52900929-52901173	HepG2	liver:	n/a	n/a
28	CHD2	chr19:52847017-52847074	GM12878	blood:	n/a	n/a
29	CREB1	chr19:52839220-52839737	HepG2	liver:	n/a	n/a
30	CREB1	chr19:52872963-52873416	GM12878	blood:	n/a	n/a
31	CREB1	chr19:52900793-52901346	HepG2	liver:	n/a	n/a
32	CTCF	chr19:52846940-52847090	WI-38	lung:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
33	CTCF	chr19:52894500-52894650	GM12873	blood:	n/a	n/a
34	CTCF	chr19:52894500-52894650	GM12878	blood:	n/a	n/a
35	CTCF	chr19:52846920-52847070	AG04449	skin:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
36	CTCF	chr19:52846890-52847072	Pancreas_OC	pancreas:	n/a	chr19:52846972-52846993 chr19:52846970-52846988
37	CTCF	chr19:52846916-52847046	MCF-7	breast:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
38	CTCF	chr19:52872920-52873070	HMF	breast:	n/a	n/a
39	CTCF	chr19:52846923-52847042	MCF-7	breast:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
40	CTCF	chr19:52846873-52847106	GM12891	blood:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
41	CTCF	chr19:52854918-52855008	Fibrobl	skin:	n/a	n/a
42	CTCF	chr19:52854950-52855009	GM13977	blood:	n/a	n/a
43	CTCF	chr19:52854880-52855030	SK-N-SH_RA	brain:	n/a	n/a
44	CTCF	chr19:52846880-52847030	HMF	breast:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
45	CTCF	chr19:52846884-52847049	HepG2	liver:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
46	CTCF	chr19:52846880-52847030	HCPEpiC	choroid plexus:	n/a	chr19:52846970-52846988 chr19:52846972-52846993
47	CTCF	chr19:52839333-52839551	Spleen_OC	spleen:	n/a	n/a
48	CTCF	chr19:52872940-52873090	BJ	skin:	n/a	n/a
49	CTCF	chr19:52872840-52872990	AG10803	skin:	n/a	n/a
50	CTCF	chr19:52846920-52847070	NHEK	skin:	n/a	chr19:52846970-52846988 chr19:52846972-52846993

(count:3238 , 50 per page) page: 1 2 3 4 5 6 7 ... 65

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:52869647-52869697	GM12878	blood:	n/a
2	chr19:52873624-52873674	HEEpiC	esophagus:	n/a
3	chr19:52848664-52848714	GM12878	blood:	n/a
4	chr19:52839738-52839788	U87	brain:	n/a
5	chr19:52873173-52873223	PFSK-1	brain:	n/a
6	chr19:52869647-52869697	GM12878	blood:	n/a
7	chr19:52873624-52873674	HEEpiC	esophagus:	n/a
8	chr19:52848664-52848714	GM12878	blood:	n/a
9	chr19:52839738-52839788	U87	brain:	n/a
10	chr19:52873173-52873223	PFSK-1	brain:	n/a
11	chr19:52873624-52873674	NT2-D1	testis:	n/a
12	chr19:52848664-52848714	HRPEpiC	eye:	n/a
13	chr19:52905427-52905477	Hepatocyte	liver:	n/a
14	chr19:52838984-52839034	NHBE	bronchial:	n/a
15	chr19:52873624-52873674	HCPEpiC	choroid plexus:	n/a
16	chr19:52869647-52869697	MCF-7	breast:	n/a
17	chr19:52873173-52873223	LNCaP	prostate:	n/a
18	chr19:52900927-52900977	HAEpiC	amniotic membrane:	n/a
19	chr19:52839936-52839986	NHBE	bronchial:	n/a
20	chr19:52900469-52900519	HL-60	blood:	n/a
21	chr19:52839405-52839455	HL-60	blood:	n/a
22	chr19:52847943-52847993	AG09309	skin:	n/a
23	chr19:52839334-52839384	A549	lung:	n/a
24	chr19:52848664-52848714	HEEpiC	esophagus:	n/a
25	chr19:52839445-52839495	Jurkat	blood:	n/a
26	chr19:52848664-52848714	AG04450	lung:	fetal
27	chr19:52900927-52900977	HIPEpiC	eye:	n/a
28	chr19:52901639-52901689	HIPEpiC	eye:	n/a
29	chr19:52900974-52901024	AoSMC	blood vessel:	n/a
30	chr19:52900980-52901030	GM12892	blood:	n/a
31	chr19:52900988-52901038	PFSK-1	brain:	n/a
32	chr19:52847933-52847983	ECC-1	luminal epithelium:	n/a
33	chr19:52900988-52901038	AG04449	skin:	fetal
34	chr19:52839047-52839097	PANC-1	pancreas:	n/a
35	chr19:52838984-52839034	HMEC	breast:	n/a
36	chr19:52900882-52900932	Caco-2	colon:	n/a
37	chr19:52900901-52900951	GM12892	blood:	n/a
38	chr19:52900882-52900932	HRPEpiC	eye:	n/a
39	chr19:52905427-52905477	HL-60	blood:	n/a
40	chr19:52839405-52839455	NT2-D1	testis:	n/a
41	chr19:52901271-52901321	T-47D	breast:	n/a
42	chr19:52872916-52872966	NB4	blood:	n/a
43	chr19:52870301-52870351	H1-hESC	embryonic stem cell:	embryo
44	chr19:52847933-52847983	GM12878	blood:	n/a
45	chr19:52847943-52847993	PFSK-1	brain:	n/a
46	chr19:52839445-52839495	SAEC	small airway:	n/a
47	chr19:52842016-52842066	U87	brain:	n/a
48	chr19:52847933-52847983	AG09309	skin:	n/a
49	chr19:52873019-52873069	Hela-S3	cervix:	n/a
50	chr19:52900970-52901020	GM06990	blood:	n/a

(count:37 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:52839457..52840970-chr19:52859823..52861892,2	MCF-7	breast:
2	chr19:52847805..52849404-chr19:52851147..52853001,2	MCF-7	breast:
3	chr19:52841087..52844060-chr19:52845758..52847842,2	MCF-7	breast:
4	chr19:52899758..52902696-chr19:52903314..52905986,3	MCF-7	breast:
5	chr19:52828291..52831274-chr19:52840252..52843029,2	K562	blood:
6	chr19:52839220..52840960-chr19:52842927..52847321,5	MCF-7	breast:
7	chr19:52834223..52835955-chr19:52837476..52839580,2	MCF-7	breast:
8	chr19:52894967..52896731-chr19:52899629..52901485,2	K562	blood:
9	chr19:52893005..52896642-chr19:52900305..52903556,3	MCF-7	breast:
10	chr19:52875265..52876916-chr19:52889763..52892567,2	MCF-7	breast:
11	chr19:52861080..52862902-chr19:52863243..52865852,2	K562	blood:
12	chr19:52901728..52903647-chr19:52912630..52914410,2	MCF-7	breast:
13	chr19:52894785..52896519-chr19:52899562..52901653,2	MCF-7	breast:
14	chr19:52903104..52905523-chr19:52907320..52908934,2	K562	blood:
15	chr19:52771349..52773088-chr19:52900874..52902470,2	MCF-7	breast:
16	chr19:52861409..52864151-chr19:52865571..52868442,2	MCF-7	breast:
17	chr19:52861409..52864151-chr19:52865571..52868442,2	MCF-7	breast:
18	chr19:52839189..52842101-chr19:52900021..52902093,2	MCF-7	breast:
19	chr19:52771880..52774244-chr19:52838831..52841718,3	MCF-7	breast:
20	chr19:52881938..52883510-chr19:52886057..52888201,2	K562	blood:
21	chr19:52839189..52842101-chr19:52900021..52902093,2	MCF-7	breast:
22	chr19:52893005..52896642-chr19:52900305..52903556,3	MCF-7	breast:
23	chr19:52881938..52883510-chr19:52886057..52888201,2	K562	blood:
24	chr19:52800699..52803892-chr19:52837325..52840976,3	MCF-7	breast:
25	chr19:52899758..52902696-chr19:52903314..52905986,3	MCF-7	breast:
26	chr19:52908988..52911904-chr19:52916328..52918022,2	K562	blood:
27	chr19:52875265..52876916-chr19:52889763..52892567,2	MCF-7	breast:
28	chr19:52894785..52896519-chr19:52899562..52901653,2	MCF-7	breast:
29	chr19:52835793..52838110-chr19:52840085..52841943,2	K562	blood:
30	chr19:52771473..52773658-chr19:52872286..52874915,2	MCF-7	breast:
31	chr19:52771196..52774040-chr19:52836837..52839956,3	MCF-7	breast:
32	chr19:52901728..52903647-chr19:52912630..52914410,2	MCF-7	breast:
33	chr19:52835793..52838110-chr19:52840085..52841943,2	K562	blood:
34	chr19:52861080..52862902-chr19:52863243..52865852,2	K562	blood:
35	chr19:52838795..52841074-chr19:52850925..52853608,3	MCF-7	breast:
36	chr19:52641710..52644473-chr19:52838292..52841252,2	MCF-7	breast:
37	chr19:52829210..52832192-chr19:52833686..52836622,2	K562	blood:

(count:43 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000269834.1
2	lnc-ZNF83-1	chr19:52898851-52899003	ENSG00000269834.1
3	lnc-ZNF83-1	chr19:52898972-52899003	ENSG00000246015
4	lnc-ZNF83-1	chr19:52899569-52899752	NONHSAT067545
5	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067545
6	lnc-ZNF480-2	chr19:52839615-52839759	NONHSAT067537
7	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067545
8	lnc-ZNF836-4	chr19:52848284-52848482	ENSG00000269535.1
9	lnc-ZNF83-1	chr19:52899863-52900005	NONHSAT067545
10	lnc-ZNF83-1	chr19:52900715-52901010	ENSG00000246015
11	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067546
12	lnc-ZNF83-1	chr19:52900448-52900520	ENSG00000269834.1
13	lnc-ZNF83-1	chr19:52899618-52899752	NONHSAT067544
14	lnc-ZNF83-1	chr19:52898780-52899003	ENSG00000269834.1
15	lnc-ZNF480-2	chr19:52850960-52851465	NONHSAT067537
16	lnc-ZNF83-1	chr19:52892272-52892556	ENSG00000269834.1
17	lnc-ZNF83-1	chr19:52899569-52899752	ENSG00000269834.1
18	lnc-ZNF83-1	chr19:52899618-52899752	ENSG00000269834.1
19	lnc-ZNF83-1	chr19:52900715-52901019	ENSG00000269834.1
20	lnc-ZNF880-1	chr19:52904938-52905006	NONHSAT067550
21	lnc-ZNF83-1	chr19:52892095-52896456	ENSG00000246015
22	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000246015
23	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000269834.1
24	lnc-ZNF480-2	chr19:52850346-52850508	NONHSAT067537
25	lnc-ZNF880-1	chr19:52905200-52905270	NONHSAT067550
26	lnc-ZNF480-2	chr19:52850960-52851302	NONHSAT067536
27	lnc-ZNF880-1	chr19:52901153-52901273	NONHSAT067550
28	lnc-ZNF480-2	chr19:52839557-52839759	NONHSAT067536
29	lnc-ZNF880-1	chr19:52901620-52901872	NONHSAT067550
30	lnc-ZNF83-1	chr19:52900715-52900985	ENSG00000246015
31	lnc-ZNF83-1	chr19:52892095-52892698	NONHSAT067540
32	lnc-ZNF83-1	chr19:52900715-52901010	ENSG00000269834.1
33	lnc-ZNF83-1	chr19:52899618-52899752	ENSG00000246015
34	lnc-ZNF83-1	chr19:52892095-52893679	ENSG00000246015
35	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067546
36	lnc-ZNF83-1	chr19:52900715-52900922	ENSG00000269834.1
37	lnc-ZNF83-1	chr19:52897584-52899003	ENSG00000246015
38	lnc-ZNF83-1	chr19:52892095-52894826	ENSG00000269834.1
39	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067544
40	lnc-ZNF83-1	chr19:52899569-52899752	ENSG00000246015
41	lnc-ZNF83-1	chr19:52899892-52900520	ENSG00000269834.1
42	lnc-ZNF83-1	chr19:52898044-52898100	ENSG00000269834.1
43	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067544

No data

Variant related genes	Relation type
ZNF880	TF binding region
ZNF528	TF binding region
ENSG00000269834	TF binding region
ZNF610	TF binding region
ENSG00000269535	TF binding region
ZNF880	CpG island
ZNF528	CpG island
ENSG00000269834	CpG island
ZNF610	CpG island
ENSG00000269535	CpG island
ENSG00000196214	chromatin interactions
ENSG00000269102	chromatin interactions
ENSG00000269834	chromatin interactions
ENSG00000198464	chromatin interactions
ENSG00000167555	chromatin interactions
ENSG00000167554	chromatin interactions
ENSG00000269535	chromatin interactions
ENSG00000204611	chromatin interactions
NASP	miRNA target sites
KIAA0196	miRNA target sites
TPT1	miRNA target sites
BMP1	miRNA target sites
CDC23	miRNA target sites
ULBP2	miRNA target sites
DLL1	miRNA target sites

Extended variants
information (count: 3517 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:3517 , 50 per page) page: 1 2 3 4 5 6 7 ... 71

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs321930	chr19:52835210-52835211	ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs575772510	chr19:52835228-52835229	ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs115894948	chr19:52835304-52835305	ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs528873340	chr19:52835322-52835323	ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs556905034	chr19:52835323-52835324	ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs62111466	chr19:52835336-52835337	ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs11084148	chr19:52835337-52835338	ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs180777103	chr19:52835342-52835343	ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs573502115	chr19:52835416-52835417	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs113463120	chr19:52835419-52835420	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs62111467	chr19:52835425-52835426	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs576836262	chr19:52835431-52835432	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs372264952	chr19:52835454-52835455	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs321929	chr19:52835464-52835465	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
15	rs10405321	chr19:52835496-52835497	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs73058102	chr19:52835556-52835557	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs146764703	chr19:52835559-52835560	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs321928	chr19:52835576-52835577	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs10404965	chr19:52835582-52835583	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs527595996	chr19:52835633-52835634	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs61263392	chr19:52835636-52835637	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs185870096	chr19:52835652-52835653	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs532612624	chr19:52835762-52835763	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs550640987	chr19:52835771-52835772	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs167708	chr19:52835787-52835788	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs192443588	chr19:52835809-52835810	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs548178318	chr19:52835812-52835813	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs574428088	chr19:52835814-52835815	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs372006019	chr19:52835815-52835816	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs386810456	chr19:52835866-52835867	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs10411053	chr19:52835868-52835869	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs183841563	chr19:52835871-52835872	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs577343813	chr19:52835899-52835900	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs538475357	chr19:52835935-52835936	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs187537975	chr19:52835963-52835964	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs574632353	chr19:52835964-52835965	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs541800846	chr19:52835986-52835987	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs559903324	chr19:52836031-52836032	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs147914829	chr19:52836033-52836034	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs572271502	chr19:52836048-52836049	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs545802744	chr19:52836058-52836059	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs117297359	chr19:52836105-52836106	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs55952017	chr19:52836147-52836148	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs549608215	chr19:52836148-52836149	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs562593277	chr19:52836213-52836214	ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs140219840	chr19:52836232-52836233	ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs190323700	chr19:52836271-52836272	ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs143996736	chr19:52836343-52836344	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs566773392	chr19:52836347-52836348	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs552164562	chr19:52836358-52836359	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Adrenocortical carcinoma	18281524	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Lung adenocarcinoma	21935476	CNVD

Chromatin state (count:3095 , 50 per page) page: 1 2 3 4 5 6 7 ... 62

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52802400-52841800	ZNF genes & repeats	Liver	Liver
2	chr19:52814600-52836600	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:52833000-52839400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:52833400-52836800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
5	chr19:52833400-52836800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:52833400-52837400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:52833600-52835600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr19:52833600-52836600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:52834400-52836600	ZNF genes & repeats	Brain Hippocampus Middle	brain
10	chr19:52836200-52836600	ZNF genes & repeats	Brain Substantia Nigra	brain
11	chr19:52836200-52836800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
12	chr19:52836400-52836800	ZNF genes & repeats	Left Ventricle	heart
13	chr19:52836600-52836800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr19:52836600-52838800	Weak transcription	Brain Hippocampus Middle	brain
15	chr19:52836600-52838800	Weak transcription	Brain Substantia Nigra	brain
16	chr19:52836800-52837200	Weak transcription	Ovary	ovary
17	chr19:52836800-52838600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr19:52836800-52838600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr19:52836800-52838600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr19:52836800-52838800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr19:52836800-52839000	Weak transcription	Left Ventricle	heart
22	chr19:52837600-52838600	Weak transcription	Right Ventricle	heart
23	chr19:52838400-52838600	Enhancers	Dnd41	blood
24	chr19:52838400-52839000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr19:52838400-52839000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr19:52838600-52838800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
27	chr19:52838600-52838800	Enhancers	Brain Anterior Caudate	brain
28	chr19:52838600-52838800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
29	chr19:52838600-52839000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
30	chr19:52838600-52839000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr19:52838600-52839000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr19:52838600-52839000	Enhancers	Right Ventricle	heart
33	chr19:52838600-52839000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
34	chr19:52838600-52839000	Active TSS	Stomach Smooth Muscle	stomach
35	chr19:52838600-52839200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
36	chr19:52838600-52839200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
37	chr19:52838600-52839400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
38	chr19:52838600-52839400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
39	chr19:52838600-52839400	ZNF genes & repeats	Thymus	Thymus
40	chr19:52838600-52839400	Flanking Active TSS	Dnd41	blood
41	chr19:52838600-52839400	ZNF genes & repeats	NHLF	lung
42	chr19:52838600-52839600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr19:52838600-52839600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
44	chr19:52838600-52839600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
45	chr19:52838600-52839600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr19:52838600-52839600	ZNF genes & repeats	Adipose Nuclei	Adipose
47	chr19:52838600-52840000	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr19:52838600-52840200	Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr19:52838600-52840400	Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr19:52838600-52840600	ZNF genes & repeats	Pancreas	Pancrea

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