Variant report

Variant	nsv912302
Chromosome Location	chr19:52859828-52928039
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:586)
CpG islands
(count:2015)
Chromatin interactive
region (count:28)
LncRNA
region (count:40)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:586 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:52900846-52901131	HepG2	liver:	n/a	n/a
2	BACH1	chr19:52873031-52873715	H1-hESC	embryonic stem cell:	n/a	n/a
3	BCLAF1	chr19:52900832-52901375	GM12878	blood:	n/a	n/a
4	BHLHE40	chr19:52872998-52873673	GM12878	blood:	n/a	chr19:52873453-52873469
5	BHLHE40	chr19:52900942-52901324	GM12878	blood:	n/a	n/a
6	CBX3	chr19:52900945-52901284	K562	blood:	n/a	n/a
7	CBX3	chr19:52900872-52901266	K562	blood:	n/a	n/a
8	CEBPB	chr19:52900477-52900699	H1-hESC	embryonic stem cell:	n/a	chr19:52900622-52900635 chr19:52900622-52900633
9	CEBPB	chr19:52900506-52900786	HepG2	liver:	n/a	chr19:52900622-52900635 chr19:52900622-52900633
10	CEBPB	chr19:52900001-52900200	HepG2	liver:	n/a	chr19:52900142-52900153
11	CHD1	chr19:52873085-52873535	GM12878	blood:	n/a	n/a
12	CHD1	chr19:52900901-52901048	H1-hESC	embryonic stem cell:	n/a	n/a
13	CHD1	chr19:52901004-52901064	GM12878	blood:	n/a	n/a
14	CHD2	chr19:52900929-52901173	HepG2	liver:	n/a	n/a
15	CHD2	chr19:52900605-52900664	GM12878	blood:	n/a	n/a
16	CHD2	chr19:52900941-52901401	GM12878	blood:	n/a	n/a
17	CHD2	chr19:52873042-52873568	GM12878	blood:	n/a	n/a
18	CREB1	chr19:52872963-52873416	GM12878	blood:	n/a	n/a
19	CREB1	chr19:52900793-52901346	HepG2	liver:	n/a	n/a
20	CTCF	chr19:52894460-52894610	HEK293	kidney:	n/a	n/a
21	CTCF	chr19:52873118-52873243	Spleen_OC	spleen:	n/a	n/a
22	CTCF	chr19:52901400-52901550	HBMEC	blood vessel:	n/a	n/a
23	CTCF	chr19:52901360-52901510	AG09309	skin:	n/a	n/a
24	CTCF	chr19:52872900-52873050	GM12871	blood:	n/a	n/a
25	CTCF	chr19:52901499-52901500	MCF-7	breast:	n/a	n/a
26	CTCF	chr19:52894516-52894528	MCF-7	breast:	n/a	n/a
27	CTCF	chr19:52894500-52894650	GM12878	blood:	n/a	n/a
28	CTCF	chr19:52901420-52901570	NHDF-neo	bronchial:	n/a	n/a
29	CTCF	chr19:52901440-52901590	HUVEC	blood vessel:	n/a	n/a
30	CTCF	chr19:52902020-52902170	WERI-Rb-1	eye:	n/a	chr19:52902071-52902084
31	CTCF	chr19:52901020-52901170	SK-N-SH_RA	brain:	n/a	n/a
32	CTCF	chr19:52927611-52927688	GM10248	blood:	n/a	n/a
33	CTCF	chr19:52872840-52872990	AG10803	skin:	n/a	n/a
34	CTCF	chr19:52901480-52901630	AG09319	gingival:	n/a	n/a
35	CTCF	chr19:52901420-52901570	SAEC	small airway:	n/a	n/a
36	CTCF	chr19:52901440-52901590	AoAF	blood vessel:	n/a	n/a
37	CTCF	chr19:52901360-52901510	HRPEpiC	eye:	n/a	n/a
38	CTCF	chr19:52901420-52901570	SK-N-SH_RA	brain:	n/a	n/a
39	CTCF	chr19:52901440-52901590	NHEK	skin:	n/a	n/a
40	CTCF	chr19:52894480-52894630	Hela-S3	cervix:	n/a	n/a
41	CTCF	chr19:52872960-52873110	GM12871	blood:	n/a	n/a
42	CTCF	chr19:52901980-52902130	SK-N-SH_RA	brain:	n/a	chr19:52902071-52902084
43	CTCF	chr19:52901500-52901650	GM12871	blood:	n/a	n/a
44	CTCF	chr19:52901460-52901610	BE2_C	brain:	n/a	n/a
45	CTCF	chr19:52872980-52873130	HUVEC	blood vessel:	n/a	n/a
46	CTCF	chr19:52901504-52901537	MCF-7	breast:	n/a	n/a
47	CTCF	chr19:52894560-52894710	GM12871	blood:	n/a	n/a
48	CTCF	chr19:52901460-52901610	GM12873	blood:	n/a	n/a
49	CTCF	chr19:52901455-52901514	LNCaP	prostate:	n/a	n/a
50	CTCF	chr19:52901460-52901610	GM12865	blood:	n/a	n/a

(count:2015 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:52900970-52901020	ProgFib	skin:	n/a
2	chr19:52873426-52873476	HEEpiC	esophagus:	n/a
3	chr19:52900970-52901020	ProgFib	skin:	n/a
4	chr19:52873426-52873476	HEEpiC	esophagus:	n/a
5	chr19:52900980-52901030	H1-hESC	embryonic stem cell:	embryo
6	chr19:52870301-52870351	PFSK-1	brain:	n/a
7	chr19:52869647-52869697	HIPEpiC	eye:	n/a
8	chr19:52873019-52873069	PrEC	prostate:	n/a
9	chr19:52900980-52901030	HRE	kidney:	n/a
10	chr19:52900974-52901024	HRPEpiC	eye:	n/a
11	chr19:52900970-52901020	HRCEpiC	kidney:	n/a
12	chr19:52901307-52901357	AoSMC	blood vessel:	n/a
13	chr19:52870301-52870351	SKMC	muscle:	n/a
14	chr19:52900901-52900951	GM06990	blood:	n/a
15	chr19:52873125-52873175	GM19239	blood:	n/a
16	chr19:52872916-52872966	NT2-D1	testis:	n/a
17	chr19:52900469-52900519	RPTEC	kidney:	n/a
18	chr19:52873106-52873156	HEK293	kidney:	embryo
19	chr19:52862167-52862217	T-47D	breast:	n/a
20	chr19:52877446-52877496	PFSK-1	brain:	n/a
21	chr19:52898170-52898220	HL-60	blood:	n/a
22	chr19:52901307-52901357	U87	brain:	n/a
23	chr19:52901271-52901321	HAEpiC	amniotic membrane:	n/a
24	chr19:52900469-52900519	Hepatocyte	liver:	n/a
25	chr19:52873085-52873135	H1-hESC	embryonic stem cell:	embryo
26	chr19:52862167-52862217	BE2_C	brain:	n/a
27	chr19:52873019-52873069	GM12891	blood:	n/a
28	chr19:52869647-52869697	GM12878	blood:	n/a
29	chr19:52873426-52873476	Jurkat	blood:	n/a
30	chr19:52873101-52873151	HPAEpiC	pulmonary alveolar:	n/a
31	chr19:52901431-52901481	PrEC	prostate:	n/a
32	chr19:52873085-52873135	NHDF-neo	bronchial:	n/a
33	chr19:52873426-52873476	HCF	heart:	n/a
34	chr19:52900882-52900932	H1-hESC	embryonic stem cell:	embryo
35	chr19:52873624-52873674	RPTEC	kidney:	n/a
36	chr19:52873624-52873674	SK-N-MC	brain:	n/a
37	chr19:52901639-52901689	A549	lung:	n/a
38	chr19:52900980-52901030	GM12891	blood:	n/a
39	chr19:52873125-52873175	HUVEC	blood vessel:	n/a
40	chr19:52901307-52901357	HCF	heart:	n/a
41	chr19:52900469-52900519	HEEpiC	esophagus:	n/a
42	chr19:52900980-52901030	ProgFib	skin:	n/a
43	chr19:52873624-52873674	HCM	heart:	n/a
44	chr19:52862167-52862217	HL-60	blood:	n/a
45	chr19:52869647-52869697	AG09309	skin:	n/a
46	chr19:52901431-52901481	HNPCEpiC	eye:	n/a
47	chr19:52888958-52889008	MCF10A-Er-Src	breast:	n/a
48	chr19:52862167-52862217	Jurkat	blood:	n/a
49	chr19:52900974-52901024	HCT-116	colon:	n/a
50	chr19:52873106-52873156	GM12892	blood:	n/a

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:52901728..52903647-chr19:52912630..52914410,2	MCF-7	breast:
2	chr19:52899758..52902696-chr19:52903314..52905986,3	MCF-7	breast:
3	chr19:52881938..52883510-chr19:52886057..52888201,2	K562	blood:
4	chr19:52861409..52864151-chr19:52865571..52868442,2	MCF-7	breast:
5	chr19:52894967..52896731-chr19:52899629..52901485,2	K562	blood:
6	chr19:52899758..52902696-chr19:52903314..52905986,3	MCF-7	breast:
7	chr19:52893005..52896642-chr19:52900305..52903556,3	MCF-7	breast:
8	chr19:52894785..52896519-chr19:52899562..52901653,2	MCF-7	breast:
9	chr19:52839457..52840970-chr19:52859823..52861892,2	MCF-7	breast:
10	chr19:52771473..52773658-chr19:52872286..52874915,2	MCF-7	breast:
11	chr19:52771349..52773088-chr19:52900874..52902470,2	MCF-7	breast:
12	chr19:52881938..52883510-chr19:52886057..52888201,2	K562	blood:
13	chr19:52903104..52905523-chr19:52907320..52908934,2	K562	blood:
14	chr19:52918097..52920312-chr19:52920533..52923080,2	MCF-7	breast:
15	chr19:52908988..52911904-chr19:52916328..52918022,2	K562	blood:
16	chr19:52893005..52896642-chr19:52900305..52903556,3	MCF-7	breast:
17	chr19:52918301..52920285-chr19:52922376..52925176,2	K562	blood:
18	chr19:52908988..52911904-chr19:52916328..52918022,2	K562	blood:
19	chr19:52894785..52896519-chr19:52899562..52901653,2	MCF-7	breast:
20	chr19:52875265..52876916-chr19:52889763..52892567,2	MCF-7	breast:
21	chr19:52901728..52903647-chr19:52912630..52914410,2	MCF-7	breast:
22	chr19:52918301..52920285-chr19:52922376..52925176,2	K562	blood:
23	chr19:52839189..52842101-chr19:52900021..52902093,2	MCF-7	breast:
24	chr19:52861080..52862902-chr19:52863243..52865852,2	K562	blood:
25	chr19:52875265..52876916-chr19:52889763..52892567,2	MCF-7	breast:
26	chr19:52861409..52864151-chr19:52865571..52868442,2	MCF-7	breast:
27	chr19:52918097..52920312-chr19:52920533..52923080,2	MCF-7	breast:
28	chr19:52861080..52862902-chr19:52863243..52865852,2	K562	blood:

(count:40 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF83-1	chr19:52897584-52899003	ENSG00000246015
2	lnc-ZNF83-1	chr19:52892095-52894826	ENSG00000269834.1
3	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067545
4	lnc-ZNF83-1	chr19:52899618-52899752	ENSG00000246015
5	lnc-ZNF83-1	chr19:52898972-52899003	ENSG00000246015
6	lnc-ZNF534-2	chr19:52918192-52918292	NONHSAT067551
7	lnc-ZNF880-1	chr19:52905200-52905270	NONHSAT067550
8	lnc-ZNF83-1	chr19:52892272-52892556	ENSG00000269834.1
9	lnc-ZNF880-1	chr19:52901620-52901872	NONHSAT067550
10	lnc-ZNF83-1	chr19:52900715-52901010	ENSG00000269834.1
11	lnc-ZNF83-1	chr19:52892095-52896456	ENSG00000246015
12	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067544
13	lnc-ZNF83-1	chr19:52899569-52899752	NONHSAT067545
14	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067546
15	lnc-ZNF83-1	chr19:52899618-52899752	NONHSAT067544
16	lnc-ZNF83-1	chr19:52900715-52901010	ENSG00000246015
17	lnc-ZNF534-2	chr19:52918377-52918606	NONHSAT067551
18	lnc-ZNF83-1	chr19:52900715-52900922	ENSG00000269834.1
19	lnc-ZNF83-1	chr19:52900715-52901019	ENSG00000269834.1
20	lnc-ZNF83-1	chr19:52892095-52893679	ENSG00000246015
21	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067545
22	lnc-ZNF83-1	chr19:52898780-52899003	ENSG00000269834.1
23	lnc-ZNF83-1	chr19:52899863-52900005	NONHSAT067545
24	lnc-ZNF83-1	chr19:52899892-52900520	ENSG00000269834.1
25	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000269834.1
26	lnc-ZNF880-1	chr19:52901153-52901273	NONHSAT067550
27	lnc-ZNF83-1	chr19:52892095-52892698	NONHSAT067540
28	lnc-ZNF83-1	chr19:52898851-52899003	ENSG00000269834.1
29	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000269834.1
30	lnc-ZNF83-1	chr19:52898044-52898100	ENSG00000269834.1
31	lnc-ZNF83-1	chr19:52899569-52899752	ENSG00000246015
32	lnc-ZNF83-1	chr19:52900448-52900520	ENSG00000269834.1
33	lnc-ZNF83-1	chr19:52899618-52899752	ENSG00000269834.1
34	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067546
35	lnc-ZNF83-1	chr19:52899569-52899752	ENSG00000269834.1
36	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000246015
37	lnc-ZNF534-2	chr19:52914625-52917621	NONHSAT067551
38	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067544
39	lnc-ZNF880-1	chr19:52904938-52905006	NONHSAT067550
40	lnc-ZNF83-1	chr19:52900715-52900985	ENSG00000246015

No data

Variant related genes	Relation type
ZNF880	TF binding region
ZNF528	TF binding region
ENSG00000269834	TF binding region
ZNF534	TF binding region
ZNF880	CpG island
ZNF528	CpG island
ENSG00000269834	CpG island
ZNF534	CpG island
ENSG00000196214	chromatin interactions
ENSG00000167554	chromatin interactions
ENSG00000167555	chromatin interactions
ENSG00000269834	chromatin interactions
KIAA0196	miRNA target sites
CDC23	miRNA target sites
NASP	miRNA target sites
TPT1	miRNA target sites
DLL1	miRNA target sites
BMP1	miRNA target sites
ULBP2	miRNA target sites

Extended variants
information (count: 3157 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:3157 , 50 per page) page: 1 2 3 4 5 6 7 ... 64

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs321946	chr19:52859828-52859829	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs574679302	chr19:52859849-52859850	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs2560886	chr19:52859920-52859921	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs2560986	chr19:52859964-52859965	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs149215915	chr19:52859987-52859988	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs530307803	chr19:52860048-52860049	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs321945	chr19:52860055-52860056	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs321944	chr19:52860064-52860065	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs376932768	chr19:52860065-52860066	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs531372371	chr19:52860157-52860158	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs149722905	chr19:52860178-52860179	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs73934436	chr19:52860182-52860183	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs10406085	chr19:52860194-52860195	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs321943	chr19:52860222-52860223	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs321942	chr19:52860236-52860237	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs572816937	chr19:52860258-52860259	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs58559208	chr19:52860259-52860260	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs535256863	chr19:52860261-52860262	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs58270495	chr19:52860264-52860265	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs59099774	chr19:52860265-52860266	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs547304671	chr19:52860323-52860324	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs540324452	chr19:52860324-52860325	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs321941	chr19:52860348-52860349	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs548339677	chr19:52860470-52860471	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs534003673	chr19:52860493-52860494	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs172804	chr19:52860501-52860502	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs189223570	chr19:52860512-52860513	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs538283141	chr19:52860527-52860528	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs556879553	chr19:52860545-52860546	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs180762589	chr19:52860555-52860556	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs527956143	chr19:52860559-52860560	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs542248662	chr19:52860578-52860579	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs368101700	chr19:52860585-52860586	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs145594984	chr19:52860621-52860622	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs370176917	chr19:52860624-52860625	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs2657935	chr19:52860627-52860628	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs572606852	chr19:52860650-52860651	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs545530845	chr19:52860667-52860668	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs570745403	chr19:52860669-52860670	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs184990095	chr19:52860673-52860674	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs143625043	chr19:52860674-52860675	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs556598195	chr19:52860680-52860681	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs146418984	chr19:52860699-52860700	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs561629584	chr19:52860725-52860726	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs529149081	chr19:52860756-52860757	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs547686268	chr19:52860759-52860760	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs367723077	chr19:52860769-52860770	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs11670904	chr19:52860774-52860775	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
49	rs144645394	chr19:52860810-52860811	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs551251294	chr19:52860813-52860814	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Adrenocortical carcinoma	18281524	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Lung adenocarcinoma	21935476	CNVD

Chromatin state (count:2355 , 50 per page) page: 1 2 3 4 5 6 7 ... 48

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52840400-52865400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr19:52840600-52861200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:52847200-52860000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr19:52848000-52862600	Weak transcription	Fetal Heart	heart
5	chr19:52848400-52870400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:52849600-52861400	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr19:52849800-52872200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:52850400-52862000	Strong transcription	Fetal Brain Female	brain
9	chr19:52850800-52860600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr19:52850800-52861200	Strong transcription	Stomach Smooth Muscle	stomach
11	chr19:52850800-52870200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr19:52850800-52870200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr19:52851600-52864200	Strong transcription	Brain Germinal Matrix	brain
14	chr19:52854200-52860400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr19:52854600-52861200	Strong transcription	Fetal Muscle Leg	muscle
16	chr19:52855200-52860600	Strong transcription	Fetal Stomach	stomach
17	chr19:52855800-52860400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
18	chr19:52856400-52861400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr19:52856600-52860600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr19:52856600-52864200	ZNF genes & repeats	Liver	Liver
21	chr19:52856800-52860400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr19:52856800-52860400	Strong transcription	Left Ventricle	heart
23	chr19:52856800-52860600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr19:52856800-52861000	Strong transcription	Fetal Lung	lung
25	chr19:52856800-52870200	ZNF genes & repeats	Ovary	ovary
26	chr19:52857000-52860200	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr19:52857000-52860200	Strong transcription	Fetal Intestine Large	intestine
28	chr19:52857000-52860400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr19:52857000-52860400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
30	chr19:52857000-52860400	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr19:52857000-52860600	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chr19:52857000-52860600	ZNF genes & repeats	Lung	lung
33	chr19:52857000-52860800	Strong transcription	Brain Anterior Caudate	brain
34	chr19:52857000-52861000	Strong transcription	Fetal Muscle Trunk	muscle
35	chr19:52857200-52860200	Strong transcription	Brain Angular Gyrus	brain
36	chr19:52857200-52860400	Strong transcription	HSMMtube	muscle
37	chr19:52857200-52860600	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr19:52857200-52861200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
39	chr19:52857400-52860400	ZNF genes & repeats	Primary T cells from cord blood	blood
40	chr19:52857600-52861200	ZNF genes & repeats	Aorta	Aorta
41	chr19:52857600-52865200	Strong transcription	Brain Hippocampus Middle	brain
42	chr19:52857800-52860400	Strong transcription	Brain Cingulate Gyrus	brain
43	chr19:52858000-52860600	ZNF genes & repeats	Thymus	Thymus
44	chr19:52858000-52862000	Strong transcription	Fetal Kidney	kidney
45	chr19:52858200-52860400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
46	chr19:52858200-52860400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
47	chr19:52858200-52860400	ZNF genes & repeats	Adipose Nuclei	Adipose
48	chr19:52858200-52860600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
49	chr19:52858200-52860600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr19:52858200-52861600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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