Variant report

Variant	nsv912334
Chromosome Location	chr19:53317230-53367392
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:743)
CpG islands
(count:1159)
Chromatin interactive
region (count:17)
LncRNA
region (count:25)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:743 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr19:53324738-53324945	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr19:53360719-53361014	H1-hESC	embryonic stem cell:	n/a	n/a
3	BATF	chr19:53336721-53337013	GM12878	blood:	n/a	chr19:53336917-53336927 chr19:53336913-53336923 chr19:53336723-53336732 chr19:53336898-53336906
4	BATF	chr19:53336688-53337003	GM12878	blood:	n/a	chr19:53336917-53336927 chr19:53336913-53336923 chr19:53336723-53336732 chr19:53336898-53336906
5	BCL11A	chr19:53362420-53362624	GM12878	blood:	n/a	n/a
6	BCL11A	chr19:53360679-53360916	GM12878	blood:	n/a	chr19:53360828-53360837
7	BHLHE40	chr19:53324867-53324898	K562	blood:	n/a	n/a
8	BHLHE40	chr19:53360687-53361035	GM12878	blood:	n/a	chr19:53360820-53360836 chr19:53360998-53361014
9	CBX3	chr19:53324640-53325255	K562	blood:	n/a	n/a
10	CBX3	chr19:53360595-53361343	K562	blood:	n/a	n/a
11	CCNT2	chr19:53361004-53361276	K562	blood:	n/a	n/a
12	CEBPB	chr19:53345961-53346152	A549	lung:	n/a	chr19:53346019-53346030
13	CEBPB	chr19:53329098-53329325	K562	blood:	n/a	n/a
14	CEBPB	chr19:53329163-53329370	H1-hESC	embryonic stem cell:	n/a	n/a
15	CEBPB	chr19:53345865-53346133	HepG2	liver:	n/a	chr19:53346019-53346030
16	CEBPB	chr19:53319087-53319167	HepG2	liver:	n/a	chr19:53319119-53319130
17	CEBPB	chr19:53328995-53329384	K562	blood:	n/a	n/a
18	CEBPB	chr19:53345864-53346169	IMR90	lung:	n/a	chr19:53346019-53346030
19	CEBPB	chr19:53329092-53329271	MCF-7	breast:	n/a	n/a
20	CEBPB	chr19:53329012-53329572	K562	blood:	n/a	n/a
21	CEBPB	chr19:53363042-53363321	K562	blood:	n/a	n/a
22	CEBPB	chr19:53363179-53363319	H1-hESC	embryonic stem cell:	n/a	n/a
23	CEBPB	chr19:53363838-53364091	IMR90	lung:	n/a	n/a
24	CEBPD	chr19:53329085-53329417	K562	blood:	n/a	n/a
25	CEBPD	chr19:53360693-53360926	HepG2	liver:	n/a	n/a
26	CHD2	chr19:53360719-53360909	K562	blood:	n/a	n/a
27	CHD2	chr19:53360829-53361263	GM12878	blood:	n/a	n/a
28	CTCF	chr19:53343023-53343127	GM20000	blood:	n/a	n/a
29	CTCF	chr19:53361040-53361190	HAc	cerebellar:	n/a	n/a
30	CTCF	chr19:53324895-53325063	K562	blood:	n/a	chr19:53325004-53325017
31	CTCF	chr19:53324761-53325046	K562	blood:	n/a	chr19:53325004-53325017
32	CTCF	chr19:53361000-53361150	GM12870	blood:	n/a	n/a
33	CTCF	chr19:53324957-53324996	GM13977	blood:	n/a	n/a
34	CTCF	chr19:53360746-53361196	K562	blood:	n/a	chr19:53360990-53361003
35	CTCF	chr19:53324938-53325019	MCF-7	breast:	n/a	chr19:53325004-53325017
36	CTCF	chr19:53324920-53325004	Pancreas_OC	pancreas:	n/a	n/a
37	CTCF	chr19:53360980-53361130	HMEC	breast:	n/a	chr19:53360990-53361003
38	CTCF	chr19:53360940-53361025	GM12892	blood:	n/a	chr19:53360990-53361003
39	CTCF	chr19:53360860-53361010	AG04449	skin:	n/a	chr19:53360990-53361003
40	CTCF	chr19:53324879-53325039	GM12891	blood:	n/a	chr19:53325004-53325017
41	CTCF	chr19:53324966-53325041	GM19239	blood:	n/a	chr19:53325004-53325017
42	CTCF	chr19:53324779-53325090	Spleen_OC	spleen:	n/a	chr19:53325004-53325017
43	CTCF	chr19:53324940-53325090	AG04449	skin:	n/a	chr19:53325004-53325017
44	CTCF	chr19:53352092-53352147	GM13976	blood:	n/a	n/a
45	CTCF	chr19:53361020-53361170	BJ	skin:	n/a	n/a
46	CTCF	chr19:53324543-53324634	Lung_OC	lung:	n/a	n/a
47	CTCF	chr19:53360774-53361155	K562	blood:	n/a	chr19:53360990-53361003
48	CTCF	chr19:53360980-53361130	GM12866	blood:	n/a	chr19:53360990-53361003
49	CTCF	chr19:53360859-53361107	Lung_OC	lung:	n/a	chr19:53360990-53361003
50	CTCF	chr19:53360835-53361022	GM19238	blood:	n/a	chr19:53360990-53361003

(count:1159 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53363482-53363532	SK-N-MC	brain:	n/a
2	chr19:53325080-53325130	HIPEpiC	eye:	n/a
3	chr19:53325080-53325130	Jurkat	blood:	n/a
4	chr19:53324198-53324248	HEK293	kidney:	embryo
5	chr19:53326091-53326141	GM19239	blood:	n/a
6	chr19:53324278-53324328	PrEC	prostate:	n/a
7	chr19:53362925-53362975	AoSMC	blood vessel:	n/a
8	chr19:53324732-53324782	HEEpiC	esophagus:	n/a
9	chr19:53357134-53357184	HAEpiC	amniotic membrane:	n/a
10	chr19:53324732-53324782	HCF	heart:	n/a
11	chr19:53357134-53357184	HepG2	liver:	n/a
12	chr19:53357134-53357184	PANC-1	pancreas:	n/a
13	chr19:53326219-53326269	SK-N-SH_RA	brain:	n/a
14	chr19:53325913-53325963	NHBE	bronchial:	n/a
15	chr19:53344366-53344416	HUVEC	blood vessel:	n/a
16	chr19:53325104-53325154	IMR90	lung:	fetal
17	chr19:53361448-53361498	ovcar-3	ovarian:	n/a
18	chr19:53325080-53325130	SK-N-MC	brain:	n/a
19	chr19:53361164-53361214	ECC-1	luminal epithelium:	n/a
20	chr19:53361448-53361498	HCPEpiC	choroid plexus:	n/a
21	chr19:53357134-53357184	A549	lung:	n/a
22	chr19:53326219-53326269	CMK	blood:	n/a
23	chr19:53361164-53361214	SAEC	small airway:	n/a
24	chr19:53324198-53324248	SK-N-MC	brain:	n/a
25	chr19:53326219-53326269	U87	brain:	n/a
26	chr19:53342580-53342630	ProgFib	skin:	n/a
27	chr19:53360728-53360778	LNCaP	prostate:	n/a
28	chr19:53324278-53324328	RPTEC	kidney:	n/a
29	chr19:53324278-53324328	BJ	skin:	n/a
30	chr19:53361164-53361214	HCPEpiC	choroid plexus:	n/a
31	chr19:53361164-53361214	GM12891	blood:	n/a
32	chr19:53360213-53360263	HRPEpiC	eye:	n/a
33	chr19:53360213-53360263	T-47D	breast:	n/a
34	chr19:53359733-53359783	NB4	blood:	n/a
35	chr19:53324278-53324328	GM19239	blood:	n/a
36	chr19:53344366-53344416	AG10803	skin:	n/a
37	chr19:53325104-53325154	HIPEpiC	eye:	n/a
38	chr19:53363482-53363532	HCF	heart:	n/a
39	chr19:53324278-53324328	HEEpiC	esophagus:	n/a
40	chr19:53359733-53359783	HepG2	liver:	n/a
41	chr19:53361448-53361498	AG04450	lung:	fetal
42	chr19:53326091-53326141	HPAEpiC	pulmonary alveolar:	n/a
43	chr19:53325080-53325130	SAEC	small airway:	n/a
44	chr19:53324278-53324328	HEK293	kidney:	embryo
45	chr19:53360213-53360263	NH-A	brain:	n/a
46	chr19:53363482-53363532	NHDF-neo	bronchial:	n/a
47	chr19:53361448-53361498	HRCEpiC	kidney:	n/a
48	chr19:53324278-53324328	K562	blood:	n/a
49	chr19:53361066-53361116	HEEpiC	esophagus:	n/a
50	chr19:53361164-53361214	SK-N-SH	brain:	n/a

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:53338835..53341536-chr19:53343202..53344870,2	K562	blood:
2	chr19:53324497..53325251-chr19:53360339..53360857,4	MCF-7	breast:
3	chr19:53322321..53326212-chr19:53359240..53361245,4	K562	blood:
4	chr19:53193532..53195862-chr19:53359115..53361191,3	K562	blood:
5	chr19:53322321..53326212-chr19:53359321..53361245,3	K562	blood:
6	chr19:53335113..53339470-chr19:53340101..53344099,5	K562	blood:
7	chr19:53324497..53325251-chr19:53360339..53360857,4	MCF-7	breast:
8	chr19:53335113..53339470-chr19:53340101..53344099,5	K562	blood:
9	chr19:53359757..53362433-chr19:53464752..53467349,2	MCF-7	breast:
10	chr19:53359564..53361265-chr19:53424872..53426783,2	MCF-7	breast:
11	chr19:53338835..53341536-chr19:53343202..53344870,2	K562	blood:
12	chr19:53357060..53358583-chr19:53400479..53402706,2	MCF-7	breast:
13	chr19:53322321..53326212-chr19:53359321..53361245,3	K562	blood:
14	chr19:53322321..53326212-chr19:53359240..53361245,4	K562	blood:
15	chr19:53324563..53325122-chr19:53360322..53360852,2	NB4	blood:
16	chr19:53339213..53341134-chr20:46203984..46206130,2	MCF-7	breast:
17	chr19:53324392..53324894-chr19:53934932..53935516,2	MCF-7	breast:

(count:25 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF468-1	chr19:53357511-53357598	NR_102299
2	lnc-ZNF468-1	chr19:53348432-53348549	NR_102300
3	lnc-ZNF468-1	chr19:53341785-53345404	NR_102301
4	lnc-ZNF468-1	chr19:53352340-53352466	NR_102300
5	lnc-ZNF320-3	chr19:53367043-53367412	NONHSAT067591
6	lnc-ZNF468-1	chr19:53357511-53357598	NR_102301
7	lnc-ZNF468-1	chr19:53341785-53345404	NR_102299
8	lnc-ZNF468-1	chr19:53357511-53357598	NR_102300
9	lnc-ZNF468-3	chr19:53317537-53317679	NONHSAT067589
10	lnc-ZNF468-1	chr19:53360825-53360902	NR_102299
11	lnc-ZNF320-3	chr19:53367175-53367412	NONHSAT067592
12	lnc-ZNF468-3	chr19:53321197-53321284	NONHSAT067588
13	lnc-ZNF468-2	chr19:53365060-53366119	NONHSAT067590
14	lnc-ZNF468-1	chr19:53348432-53348549	NR_102299
15	lnc-ZNF468-3	chr19:53324839-53324886	NONHSAT067588
16	lnc-ZNF468-3	chr19:53321197-53321281	NONHSAT067589
17	lnc-ZNF468-1	chr19:53357125-53357360	NR_102300
18	lnc-ZNF468-1	chr19:53352340-53352466	NR_102299
19	lnc-ZNF468-1	chr19:53360825-53360902	NR_102300
20	lnc-ZNF468-1	chr19:53357125-53357379	NR_102301
21	lnc-ZNF468-1	chr19:53341785-53345404	NR_102300
22	lnc-ZNF468-1	chr19:53357125-53357379	NR_102299
23	lnc-ZNF701-2	chr19:53342913-53343520	NONHSAT067585
24	lnc-ZNF468-1	chr19:53360825-53360902	NR_102301
25	lnc-ZNF468-1	chr19:53352340-53352466	NR_102301

No data

Variant related genes	Relation type
ENSG00000268225	TF binding region
ZNF28	TF binding region
ZNF468	TF binding region
ENSG00000268225	CpG island
ZNF28	CpG island
ZNF468	CpG island
ENSG00000182986	chromatin interactions
ENSG00000204604	chromatin interactions
ENSG00000180257	chromatin interactions
ENSG00000160336	chromatin interactions
ENSG00000241015	chromatin interactions
ENSG00000198538	chromatin interactions
ENSG00000269646	chromatin interactions
ENSG00000221874	chromatin interactions
ENSG00000167766	chromatin interactions
ENSG00000213793	chromatin interactions

Extended variants
information (count: 2783 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:2783 , 50 per page) page: 1 2 3 4 5 6 7 ... 56

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs28760449	chr19:53317230-53317231	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs536985082	chr19:53317231-53317232	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs527589439	chr19:53317281-53317282	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs73592011	chr19:53317337-53317338	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs112288210	chr19:53317352-53317353	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs117804155	chr19:53317355-53317356	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs565302314	chr19:53317366-53317367	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs115459740	chr19:53317372-53317373	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs7260398	chr19:53317395-53317396	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs539548246	chr19:53317431-53317432	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs546264350	chr19:53317478-53317479	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs143986009	chr19:53317490-53317491	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs555299498	chr19:53317515-53317516	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs185893409	chr19:53317516-53317517	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs7246446	chr19:53317522-53317523	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs7245433	chr19:53317536-53317537	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs371962529	chr19:53317542-53317543	Weak transcription Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
18	rs541086716	chr19:53317544-53317545	Weak transcription Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
19	rs548234591	chr19:53317600-53317601	Weak transcription Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
20	rs560542149	chr19:53317651-53317652	Weak transcription Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
21	rs112164150	chr19:53317661-53317662	Weak transcription Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
22	rs190195740	chr19:53317705-53317706	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs527553873	chr19:53317770-53317771	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs552367103	chr19:53317834-53317835	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs111635674	chr19:53317848-53317849	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs60135815	chr19:53317858-53317859	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs563164711	chr19:53317879-53317880	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs564479323	chr19:53317896-53317897	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs570633842	chr19:53317897-53317898	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs373909394	chr19:53317904-53317905	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs58437853	chr19:53317936-53317937	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs142200109	chr19:53317991-53317992	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs11666857	chr19:53317992-53317993	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs181451454	chr19:53317998-53317999	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs61645520	chr19:53317999-53318000	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs139795370	chr19:53318013-53318014	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs56808067	chr19:53318027-53318028	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs559133297	chr19:53318055-53318056	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs186421116	chr19:53318059-53318060	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs11670643	chr19:53318064-53318065	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs58925274	chr19:53318079-53318080	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs61656609	chr19:53318105-53318106	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs541820934	chr19:53318112-53318113	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs559860991	chr19:53318210-53318211	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs60202868	chr19:53318277-53318278	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs190912424	chr19:53318321-53318322	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs368256207	chr19:53318354-53318355	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs71938117	chr19:53318355-53318356	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs372493719	chr19:53318356-53318357	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs545759814	chr19:53318366-53318367	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Adrenocortical carcinoma	18281524	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:1633 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53296200-53324000	Weak transcription	Fetal Brain Male	brain
2	chr19:53306000-53324000	Weak transcription	Colon Smooth Muscle	Colon
3	chr19:53306600-53324000	Weak transcription	Psoas Muscle	Psoas
4	chr19:53308000-53319600	Weak transcription	HUVEC	blood vessel
5	chr19:53308200-53319200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:53308200-53320200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr19:53308200-53324000	Weak transcription	Fetal Kidney	kidney
8	chr19:53311000-53323600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr19:53311200-53320200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr19:53311400-53317600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr19:53311400-53323600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr19:53311400-53324000	Weak transcription	NHDF-Ad	bronchial
13	chr19:53311600-53317600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr19:53313400-53320800	Weak transcription	Brain Hippocampus Middle	brain
15	chr19:53313600-53324000	Weak transcription	Fetal Lung	lung
16	chr19:53313600-53324000	Weak transcription	Right Ventricle	heart
17	chr19:53313600-53324200	Weak transcription	Brain Substantia Nigra	brain
18	chr19:53313800-53317400	Weak transcription	Gastric	stomach
19	chr19:53313800-53317400	Weak transcription	Ovary	ovary
20	chr19:53313800-53317400	Weak transcription	Spleen	Spleen
21	chr19:53313800-53318000	Weak transcription	Osteobl	bone
22	chr19:53313800-53318400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr19:53313800-53320200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr19:53313800-53320200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr19:53313800-53321000	Weak transcription	NH-A	brain
26	chr19:53313800-53323600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr19:53313800-53323800	Weak transcription	Stomach Mucosa	stomach
28	chr19:53313800-53324000	Weak transcription	Brain Angular Gyrus	brain
29	chr19:53313800-53324000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr19:53313800-53324000	Weak transcription	HSMM	muscle
31	chr19:53313800-53324000	Weak transcription	NHLF	lung
32	chr19:53313800-53324200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr19:53314000-53317400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr19:53314000-53317400	Weak transcription	Esophagus	oesophagus
35	chr19:53314000-53317400	Weak transcription	Pancreas	Pancrea
36	chr19:53314000-53317400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr19:53314000-53317600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr19:53314000-53319200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr19:53314000-53319800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr19:53314000-53320000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr19:53314000-53320200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr19:53314000-53320200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr19:53314000-53320200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr19:53314000-53320200	Weak transcription	Fetal Muscle Leg	muscle
45	chr19:53314000-53320200	Weak transcription	Fetal Thymus	thymus
46	chr19:53314000-53320200	Weak transcription	HMEC	breast
47	chr19:53314000-53320200	Weak transcription	HSMMtube	muscle
48	chr19:53314000-53320200	Weak transcription	NHEK	skin
49	chr19:53314000-53320400	Weak transcription	Brain Anterior Caudate	brain
50	chr19:53314000-53320800	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links