Variant report

Variant	nsv912832
Chromosome Location	chr20:25527984-25595175
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:905)
CpG islands
(count:1098)
Chromatin interactive
region (count:52)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:905 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr20:25557897-25557902	HepG2	liver:	n/a	n/a
2	ARID3A	chr20:25583644-25583908	HepG2	liver:	n/a	n/a
3	ARID3A	chr20:25566452-25566585	HepG2	liver:	n/a	n/a
4	ARID3A	chr20:25530308-25530796	HepG2	liver:	n/a	n/a
5	ARID3A	chr20:25565236-25565725	HepG2	liver:	n/a	n/a
6	ARID3A	chr20:25565954-25566222	HepG2	liver:	n/a	n/a
7	ARID3A	chr20:25559627-25559973	HepG2	liver:	n/a	n/a
8	ARID3A	chr20:25555145-25555336	HepG2	liver:	n/a	n/a
9	ARID3A	chr20:25589872-25589910	K562	blood:	n/a	n/a
10	ATF1	chr20:25587145-25587281	K562	blood:	n/a	n/a
11	BACH1	chr20:25565874-25566218	H1-hESC	embryonic stem cell:	n/a	n/a
12	BATF	chr20:25583645-25583879	GM12878	blood:	n/a	n/a
13	BCL3	chr20:25590098-25590301	GM12878	blood:	n/a	n/a
14	BCL3	chr20:25590100-25590330	GM12878	blood:	n/a	n/a
15	BCL3	chr20:25565131-25566237	A549	lung:	n/a	chr20:25565815-25565824 chr20:25565704-25565717 chr20:25565700-25565713 chr20:25565668-25565681 chr20:25565884-25565893 chr20:25565855-25565868 chr20:25565861-25565869
16	BHLHE40	chr20:25565204-25565583	HepG2	liver:	n/a	chr20:25565361-25565382 chr20:25565368-25565377 chr20:25565365-25565378
17	BHLHE40	chr20:25565120-25566722	HepG2	liver:	n/a	chr20:25565810-25565826 chr20:25565361-25565382 chr20:25566118-25566134 chr20:25565368-25565377 chr20:25565365-25565378
18	BHLHE40	chr20:25583502-25583877	HepG2	liver:	n/a	n/a
19	BHLHE40	chr20:25565181-25565563	A549	lung:	n/a	chr20:25565361-25565382 chr20:25565368-25565377 chr20:25565365-25565378
20	BHLHE40	chr20:25559687-25559971	HepG2	liver:	n/a	n/a
21	BHLHE40	chr20:25567805-25567835	HepG2	liver:	n/a	n/a
22	BHLHE40	chr20:25583008-25583802	HepG2	liver:	n/a	n/a
23	BRCA1	chr20:25584672-25584744	HepG2	liver:	n/a	n/a
24	BRCA1	chr20:25546120-25546182	GM12878	blood:	n/a	n/a
25	BRCA1	chr20:25554727-25554782	HepG2	liver:	n/a	n/a
26	BRCA1	chr20:25581339-25581343	HepG2	liver:	n/a	n/a
27	BRCA1	chr20:25580843-25580975	HepG2	liver:	n/a	n/a
28	BRCA1	chr20:25565815-25566240	HepG2	liver:	n/a	n/a
29	BRCA1	chr20:25565272-25565601	HepG2	liver:	n/a	n/a
30	BRCA1	chr20:25582265-25582269	HepG2	liver:	n/a	n/a
31	CEBPB	chr20:25537607-25537855	K562	blood:	n/a	chr20:25537690-25537701
32	CEBPB	chr20:25551357-25551552	HepG2	liver:	n/a	chr20:25551394-25551405
33	CEBPB	chr20:25577527-25577891	MCF-7	breast:	n/a	chr20:25577704-25577715
34	CEBPB	chr20:25583581-25583915	HepG2	liver:	n/a	n/a
35	CEBPB	chr20:25537574-25537831	IMR90	lung:	n/a	chr20:25537690-25537701
36	CEBPB	chr20:25576494-25576770	Hela-S3	cervix:	n/a	chr20:25576649-25576660
37	CEBPB	chr20:25539641-25539737	HepG2	liver:	n/a	chr20:25539701-25539712 chr20:25539703-25539714
38	CEBPB	chr20:25576558-25576731	HepG2	liver:	n/a	chr20:25576649-25576660
39	CEBPB	chr20:25565788-25566252	ECC-1	luminal epithelium:	n/a	n/a
40	CEBPB	chr20:25576486-25576803	ECC-1	luminal epithelium:	n/a	chr20:25576649-25576660
41	CEBPB	chr20:25576435-25576814	MCF-7	breast:	n/a	chr20:25576649-25576660
42	CEBPB	chr20:25576457-25576789	ECC-1	luminal epithelium:	n/a	chr20:25576649-25576660
43	CEBPB	chr20:25576524-25576724	A549	lung:	n/a	chr20:25576649-25576660
44	CEBPB	chr20:25576647-25576689	IMR90	lung:	n/a	chr20:25576649-25576660
45	CEBPB	chr20:25566088-25566202	Hela-S3	cervix:	n/a	n/a
46	CEBPB	chr20:25537542-25537847	A549	lung:	n/a	chr20:25537690-25537701
47	CEBPB	chr20:25587210-25587393	K562	blood:	n/a	n/a
48	CEBPB	chr20:25560845-25561012	HepG2	liver:	n/a	chr20:25560920-25560931
49	CEBPB	chr20:25566030-25566286	HepG2	liver:	n/a	n/a
50	CEBPB	chr20:25583632-25583965	HepG2	liver:	n/a	n/a

(count:1098 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:25584456-25584506	HPAEpiC	pulmonary alveolar:	n/a
2	chr20:25563834-25563884	GM06990	blood:	n/a
3	chr20:25583652-25583702	HRE	kidney:	n/a
4	chr20:25584456-25584506	HMEC	breast:	n/a
5	chr20:25581368-25581418	HRE	kidney:	n/a
6	chr20:25566513-25566563	PFSK-1	brain:	n/a
7	chr20:25583652-25583702	NB4	blood:	n/a
8	chr20:25580630-25580680	H1-hESC	embryonic stem cell:	embryo
9	chr20:25566336-25566386	MCF10A-Er-Src	breast:	n/a
10	chr20:25566470-25566520	HPAEpiC	pulmonary alveolar:	n/a
11	chr20:25583082-25583132	LNCaP	prostate:	n/a
12	chr20:25566180-25566230	HRCEpiC	kidney:	n/a
13	chr20:25565879-25565929	HMEC	breast:	n/a
14	chr20:25583082-25583132	AG10803	skin:	n/a
15	chr20:25565879-25565929	ProgFib	skin:	n/a
16	chr20:25583324-25583374	AG09319	gingival:	n/a
17	chr20:25566563-25566613	ovcar-3	ovarian:	n/a
18	chr20:25583324-25583374	GM12891	blood:	n/a
19	chr20:25583324-25583374	K562	blood:	n/a
20	chr20:25563834-25563884	BE2_C	brain:	n/a
21	chr20:25566513-25566563	HepG2	liver:	n/a
22	chr20:25584456-25584506	AG04450	lung:	fetal
23	chr20:25565879-25565929	ovcar-3	ovarian:	n/a
24	chr20:25566382-25566432	BE2_C	brain:	n/a
25	chr20:25583652-25583702	LNCaP	prostate:	n/a
26	chr20:25583324-25583374	GM12892	blood:	n/a
27	chr20:25566336-25566386	GM06990	blood:	n/a
28	chr20:25584456-25584506	HIPEpiC	eye:	n/a
29	chr20:25583652-25583702	HCM	heart:	n/a
30	chr20:25566178-25566228	HUVEC	blood vessel:	n/a
31	chr20:25570529-25570579	T-47D	breast:	n/a
32	chr20:25581368-25581418	GM12892	blood:	n/a
33	chr20:25565667-25565717	BJ	skin:	n/a
34	chr20:25566563-25566613	MCF10A-Er-Src	breast:	n/a
35	chr20:25580630-25580680	MCF-7	breast:	n/a
36	chr20:25566178-25566228	ECC-1	luminal epithelium:	n/a
37	chr20:25566563-25566613	PANC-1	pancreas:	n/a
38	chr20:25581368-25581418	HEEpiC	esophagus:	n/a
39	chr20:25566180-25566230	HIPEpiC	eye:	n/a
40	chr20:25566563-25566613	AG10803	skin:	n/a
41	chr20:25566336-25566386	GM12892	blood:	n/a
42	chr20:25581368-25581418	HMEC	breast:	n/a
43	chr20:25581368-25581418	SK-N-SH	brain:	n/a
44	chr20:25565667-25565717	Hepatocyte	liver:	n/a
45	chr20:25566563-25566613	HMEC	breast:	n/a
46	chr20:25570529-25570579	AG09309	skin:	n/a
47	chr20:25584456-25584506	HepG2	liver:	n/a
48	chr20:25566470-25566520	HL-60	blood:	n/a
49	chr20:25581368-25581418	PANC-1	pancreas:	n/a
50	chr20:25566382-25566432	MCF10A-Er-Src	breast:	n/a

(count:52 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr20:25589103..25590623-chr3:128880296..128881849,2	K562	blood:
2	chr20:25588843..25590699-chr20:25604414..25605941,2	MCF-7	breast:
3	chr20:25585705..25588241-chr20:25603917..25606437,2	K562	blood:
4	chr20:25527993..25531935-chr20:25532103..25536605,5	MCF-7	breast:
5	chr20:25450369..25451319-chr20:25554838..25555706,2	K562	blood:
6	chr20:25579638..25582269-chr20:25599435..25601779,2	K562	blood:
7	chr20:25274847..25275686-chr20:25555235..25555796,2	K562	blood:
8	chr20:25590781..25592605-chr20:25602144..25606440,3	MCF-7	breast:
9	chr20:25535541..25538221-chr20:25603940..25606059,2	MCF-7	breast:
10	chr20:25551184..25554457-chr20:25563697..25566263,4	MCF-7	breast:
11	chr20:25528846..25530545-chr20:25675898..25678279,2	MCF-7	breast:
12	chr20:25552816..25556954-chr20:25564456..25567707,4	MCF-7	breast:
13	chr20:25426609..25429585-chr20:25546782..25548440,2	MCF-7	breast:
14	chr20:25550297..25552120-chr20:25553741..25555593,3	MCF-7	breast:
15	chr20:25593129..25595979-chr20:25604532..25607057,2	MCF-7	breast:
16	chr20:25450464..25451286-chr20:25554579..25555594,4	MCF-7	breast:
17	chr20:25527993..25531935-chr20:25532103..25536605,5	MCF-7	breast:
18	chr20:25555296..25557019-chr20:25561500..25564069,2	MCF-7	breast:
19	chr20:25559789..25563161-chr20:25564263..25567245,3	MCF-7	breast:
20	chr20:25565180..25567156-chr20:25676091..25678288,2	MCF-7	breast:
21	chr20:25555296..25557019-chr20:25561500..25564069,2	MCF-7	breast:
22	chr20:25564265..25567754-chr20:25602950..25606854,10	MCF-7	breast:
23	chr20:25589936..25592096-chr20:25592501..25595194,2	MCF-7	breast:
24	chr20:25560873..25562976-chr20:25579297..25581436,2	MCF-7	breast:
25	chr20:25519449..25520233-chr20:25534260..25534819,2	MCF-7	breast:
26	chr20:25550297..25552120-chr20:25553741..25555593,3	MCF-7	breast:
27	chr20:25582607..25585301-chr20:25602976..25605414,2	MCF-7	breast:
28	chr20:25316897..25317523-chr20:25554784..25555668,2	MCF-7	breast:
29	chr20:25476655..25479810-chr20:25563858..25567519,3	MCF-7	breast:
30	chr20:25589271..25591160-chr20:25602645..25604605,2	K562	blood:
31	chr20:25566937..25569724-chr20:25600095..25602685,2	K562	blood:
32	chr20:25560873..25562976-chr20:25579297..25581436,2	MCF-7	breast:
33	chr20:25563758..25567670-chr20:25600746..25606260,10	MCF-7	breast:
34	chr20:25573384..25574225-chr20:53361184..53361762,2	MCF-7	breast:
35	chr20:25581299..25586315-chr20:25601577..25606333,5	MCF-7	breast:
36	chr20:25560435..25563283-chr20:25564652..25566367,3	MCF-7	breast:
37	chr20:25503491..25506421-chr20:25552111..25554965,2	MCF-7	breast:
38	chr20:25591410..25597359-chr20:25600309..25606040,12	K562	blood:
39	chr20:25464605..25465563-chr20:25554811..25555726,5	MCF-7	breast:
40	chr20:25571499..25573188-chr20:25604906..25607655,2	K562	blood:
41	chr20:25565669..25567691-chr20:25589575..25591677,2	MCF-7	breast:
42	chr20:25578107..25581222-chr20:25601982..25605095,3	MCF-7	breast:
43	chr20:25581473..25584276-chr20:25603857..25605738,2	K562	blood:
44	chr20:25228496..25230155-chr20:25552419..25555224,2	MCF-7	breast:
45	chr20:25521309..25522938-chr20:25526944..25528978,2	MCF-7	breast:
46	chr20:25564805..25567355-chr20:25573167..25576913,4	MCF-7	breast:
47	chr20:25573368..25577137-chr20:25602924..25606486,3	MCF-7	breast:
48	chr20:25594825..25598206-chr20:25602674..25604770,4	MCF-7	breast:
49	chr20:25550441..25553359-chr20:25602338..25605786,3	K562	blood:
50	chr20:25524006..25525778-chr20:25527051..25529614,2	MCF-7	breast:

No data

Variant related genes	Relation type
RNU6ATAC17P	TF binding region
NINL	TF binding region
RNU6ATAC17P	CpG island
NINL	CpG island
ENSG00000251883	chromatin interactions
ENSG00000100994	chromatin interactions
ENSG00000240682	chromatin interactions
ENSG00000213742	chromatin interactions
ENSG00000130684	chromatin interactions
ENSG00000101004	chromatin interactions
ENSG00000170191	chromatin interactions
ENSG00000261796	chromatin interactions

Extended variants
information (count: 2516 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:2516 , 50 per page) page: 1 2 3 4 5 6 7 ... 51

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2210052	chr20:25527984-25527985	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs574377384	chr20:25528005-25528006	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs533611200	chr20:25528050-25528051	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs376188604	chr20:25528052-25528053	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs114669474	chr20:25528104-25528105	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs557354463	chr20:25528113-25528114	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs2210053	chr20:25528114-25528115	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs117297018	chr20:25528134-25528135	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs373273852	chr20:25528138-25528139	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs145012575	chr20:25528167-25528168	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs544892967	chr20:25528214-25528215	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs561089456	chr20:25528234-25528235	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs530126029	chr20:25528250-25528251	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs546751300	chr20:25528251-25528252	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs560193607	chr20:25528269-25528270	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs73597815	chr20:25528271-25528272	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs551941443	chr20:25528280-25528281	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs577639762	chr20:25528353-25528354	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs537700148	chr20:25528404-25528405	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs548473332	chr20:25528426-25528427	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs567928924	chr20:25528435-25528436	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs533804833	chr20:25528457-25528458	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs553829941	chr20:25528484-25528485	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs878176	chr20:25528502-25528503	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs112390427	chr20:25528516-25528517	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs147600018	chr20:25528517-25528518	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs540261169	chr20:25528531-25528532	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs575920232	chr20:25528548-25528549	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs544547503	chr20:25528610-25528611	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs555267109	chr20:25528629-25528630	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs114240022	chr20:25528646-25528647	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs114793751	chr20:25528746-25528747	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs913794	chr20:25528789-25528790	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs532464252	chr20:25528793-25528794	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs545893566	chr20:25528798-25528799	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs562299566	chr20:25528805-25528806	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs75588873	chr20:25528808-25528809	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs139515746	chr20:25528810-25528811	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs568321530	chr20:25528825-25528826	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs527631332	chr20:25528834-25528835	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs114865897	chr20:25528846-25528847	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs552149654	chr20:25528907-25528908	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs188710529	chr20:25528915-25528916	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs149680805	chr20:25528921-25528922	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs145571204	chr20:25528926-25528927	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs569326659	chr20:25528933-25528934	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs561508492	chr20:25529040-25529041	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs554901056	chr20:25529086-25529087	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs575066132	chr20:25529111-25529112	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs6115206	chr20:25529139-25529140	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	16272173	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Renal cell carcinoma	18765545	CNVD
Alagille syndrome	17576883	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Breast cancer	16608533	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17133270	CNVD
Thrombophilia	17576883	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	21062444	CNVD
Hepatocellular carcinoma	22174799	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Oral cancer	21386901	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:1509 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25498200-25532200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:25517800-25554600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr20:25518800-25530200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:25520000-25532000	Weak transcription	Dnd41	blood
5	chr20:25520200-25529000	Weak transcription	Stomach Mucosa	stomach
6	chr20:25520600-25528800	Weak transcription	Gastric	stomach
7	chr20:25521000-25530200	Weak transcription	Brain Germinal Matrix	brain
8	chr20:25521200-25529200	Weak transcription	Placenta	Placenta
9	chr20:25521200-25530600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr20:25521400-25529200	Weak transcription	Ovary	ovary
11	chr20:25521400-25530000	Weak transcription	HSMM	muscle
12	chr20:25521400-25532200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr20:25521400-25534200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr20:25521600-25530200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr20:25521600-25565000	Weak transcription	Aorta	Aorta
16	chr20:25522000-25530000	Weak transcription	Colon Smooth Muscle	Colon
17	chr20:25522800-25528800	Weak transcription	Spleen	Spleen
18	chr20:25523000-25529000	Weak transcription	Fetal Intestine Large	intestine
19	chr20:25523000-25529000	Weak transcription	Thymus	Thymus
20	chr20:25523000-25529800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr20:25523800-25528200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr20:25524000-25529200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr20:25524400-25528600	Weak transcription	Esophagus	oesophagus
24	chr20:25524400-25530000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr20:25524400-25565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr20:25524600-25529800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr20:25524600-25529800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr20:25524600-25530000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr20:25524600-25530000	Enhancers	A549	lung
30	chr20:25524800-25531600	Enhancers	Fetal Lung	lung
31	chr20:25525000-25528000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr20:25525000-25528400	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr20:25525000-25529800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr20:25525000-25535400	Enhancers	Fetal Heart	heart
35	chr20:25525400-25528600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr20:25525800-25528600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr20:25525800-25530000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr20:25525800-25530000	Weak transcription	Osteobl	bone
39	chr20:25526000-25529800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr20:25526000-25529800	Weak transcription	NHLF	lung
41	chr20:25526000-25530200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr20:25526000-25530200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr20:25526000-25530200	Weak transcription	NH-A	brain
44	chr20:25526200-25529800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr20:25526200-25534400	Weak transcription	Brain Substantia Nigra	brain
46	chr20:25526400-25529000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr20:25526400-25529400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr20:25526400-25529400	Weak transcription	HMEC	breast
49	chr20:25526400-25530000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr20:25526400-25530200	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links