Variant report

Variant nsv912940
Chromosome Location chr20:52646029-52663409
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:52641600-52676400 Weak transcription Stomach Mucosa stomach
2 chr20:52644800-52666400 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr20:52645000-52646400 Enhancers Placenta Placenta
4 chr20:52645200-52646400 Enhancers NHDF-Ad bronchial
5 chr20:52645200-52682200 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr20:52645400-52646400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr20:52645600-52646400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr20:52645800-52647200 Enhancers Brain Cingulate Gyrus brain
9 chr20:52646000-52646200 Active TSS Brain Angular Gyrus brain
10 chr20:52646000-52646200 Weak transcription Brain Anterior Caudate brain
11 chr20:52646000-52646200 Weak transcription Brain Inferior Temporal Lobe brain
12 chr20:52646000-52646800 Enhancers Brain Substantia Nigra brain
13 chr20:52646000-52647200 Enhancers Brain Hippocampus Middle brain
14 chr20:52646000-52657000 Weak transcription Gastric stomach
15 chr20:52646000-52666600 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr20:52646200-52646600 Enhancers Brain Angular Gyrus brain
17 chr20:52646200-52646600 Enhancers Brain Inferior Temporal Lobe brain
18 chr20:52646200-52646800 Enhancers Brain Anterior Caudate brain
19 chr20:52646400-52647200 Enhancers Fetal Brain Male brain
20 chr20:52654800-52656400 Enhancers K562 blood
21 chr20:52655200-52656400 Enhancers Fetal Kidney kidney
22 chr20:52655200-52657200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
23 chr20:52655200-52658200 Enhancers Fetal Stomach stomach
24 chr20:52656400-52656800 Weak transcription Fetal Kidney kidney
25 chr20:52656400-52656800 Weak transcription K562 blood
26 chr20:52656800-52657200 Enhancers Colon Smooth Muscle Colon
27 chr20:52656800-52657400 Enhancers Fetal Kidney kidney
28 chr20:52656800-52657400 Enhancers K562 blood
29 chr20:52657000-52657400 Enhancers Gastric stomach
30 chr20:52657000-52657800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr20:52657000-52657800 Enhancers HSMMtube muscle
32 chr20:52657200-52657600 Enhancers NHDF-Ad bronchial
33 chr20:52657400-52658600 Weak transcription K562 blood
34 chr20:52657600-52659400 Weak transcription NHDF-Ad bronchial
35 chr20:52657800-52659600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr20:52657800-52664800 Weak transcription HSMMtube muscle
37 chr20:52658200-52659400 Weak transcription Fetal Stomach stomach
38 chr20:52658600-52660000 Enhancers K562 blood
39 chr20:52659400-52660400 Enhancers Fetal Stomach stomach
40 chr20:52659400-52661000 Enhancers NHDF-Ad bronchial
41 chr20:52659600-52659800 Enhancers Duodenum Smooth Muscle Duodenum
42 chr20:52659600-52660600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr20:52659600-52661000 Enhancers GM12878-XiMat blood
44 chr20:52659600-52661800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr20:52659800-52660600 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr20:52660000-52660400 Enhancers Fetal Brain Male brain
47 chr20:52660000-52660600 Enhancers Fetal Lung lung
48 chr20:52660000-52660800 Flanking Active TSS K562 blood
49 chr20:52660000-52661000 Enhancers NHLF lung
50 chr20:52660000-52661200 Enhancers Osteobl bone

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