Variant report
| Variant | nsv9140 |
|---|---|
| Chromosome Location | chr14:42912859-42920676 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs8017539 | chr14:42919811-42919812 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 2 | rs555635901 | chr14:42919841-42919842 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs8018875 | chr14:42919855-42919856 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 4 | rs147476497 | chr14:42919889-42919890 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs553665808 | chr14:42919922-42919923 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs578055706 | chr14:42919932-42919933 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs11845852 | chr14:42919967-42919968 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 8 | rs138847813 | chr14:42920019-42920020 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs141237216 | chr14:42920060-42920061 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs543153076 | chr14:42920067-42920068 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs561723843 | chr14:42920098-42920099 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs529120561 | chr14:42920099-42920100 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs114357813 | chr14:42920133-42920134 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs573212226 | chr14:42920138-42920139 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs190862042 | chr14:42920140-42920141 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs183281368 | chr14:42920143-42920144 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs8013437 | chr14:42920147-42920148 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 18 | rs563802022 | chr14:42920190-42920191 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs150799038 | chr14:42920198-42920199 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:61)
| Disease | PMID | Source |
|---|---|---|
| Esophageal cancer | 21851588 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Retinoblastoma | 21504564 | CNVD |
| High-proliferative meningiomas | 17937814 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Autism | 22495311 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Cancer | 21637783 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Melanoma | 18172304 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Neuroblastoma | 19435921 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Breast cancer | 17899364 | CNVD |
| Gastrointestinal stromal cancer | 19259404 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Gastrointestinal stromal cancer | 20818650 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Chronic myeloid leukemia | 20724749 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Burkitt''s lymphoma | 19759907 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Acute lymphoblastic leukemia | 21098271 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Cancer | 21183584 | CNVD |
| Thyroid cancer | 19470727 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Schizophrenia | 23813976 | CNVD |
| Immune disease | 21076436 | CNVD |
| Immune disease | 21042300 | CNVD |
| Neurodevelopmental disorder | 22521361 | CNVD |
| Renal cell carcinoma | 18194544 | CNVD |
| Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| Glioblastoma multiforme | 21569311 | CNVD |
| Schizophrenia | 20967226 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:42919800-42920200 | Enhancers | Pancreatic Islets | Pancreatic Islet |
