Variant report

Variant	nsv915747
Chromosome Location	chr18:225017-287764
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr18:267953-268346	HepG2	liver:	n/a	n/a
2	ARID3A	chr18:268051-268209	K562	blood:	n/a	n/a
3	ARID3A	chr18:269422-269886	HepG2	liver:	n/a	n/a
4	ARID3A	chr18:286488-286736	HepG2	liver:	n/a	n/a
5	ATF1	chr18:267856-268252	K562	blood:	n/a	n/a
6	ATF2	chr18:267857-268299	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr18:267677-268450	GM12878	blood:	n/a	n/a
8	ATF2	chr18:267806-268299	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr18:267573-268458	GM12878	blood:	n/a	n/a
10	ATF3	chr18:267819-268244	K562	blood:	n/a	chr18:268062-268075 chr18:268064-268072 chr18:268065-268072 chr18:268061-268076 chr18:268062-268075 chr18:268062-268072 chr18:268061-268074 chr18:268062-268072 chr18:268053-268073 chr18:268061-268072 chr18:268062-268073
11	ATF3	chr18:267842-268358	GM12878	blood:	n/a	chr18:268062-268075 chr18:268064-268072 chr18:268065-268072 chr18:268061-268076 chr18:268062-268075 chr18:268062-268072 chr18:268061-268074 chr18:268062-268072 chr18:268053-268073 chr18:268061-268072 chr18:268062-268073
12	ATF3	chr18:267636-268296	H1-hESC	embryonic stem cell:	n/a	chr18:268062-268075 chr18:268064-268072 chr18:268065-268072 chr18:268061-268076 chr18:268062-268075 chr18:268062-268072 chr18:268061-268074 chr18:268062-268072 chr18:268053-268073 chr18:268061-268072 chr18:268062-268073
13	ATF3	chr18:267910-268154	H1-hESC	embryonic stem cell:	n/a	chr18:268062-268075 chr18:268064-268072 chr18:268065-268072 chr18:268061-268076 chr18:268062-268075 chr18:268062-268072 chr18:268061-268074 chr18:268062-268072 chr18:268053-268073 chr18:268061-268072 chr18:268062-268073
14	ATF3	chr18:267854-268179	HepG2	liver:	n/a	chr18:268062-268075 chr18:268064-268072 chr18:268065-268072 chr18:268061-268076 chr18:268062-268075 chr18:268062-268072 chr18:268061-268074 chr18:268062-268072 chr18:268053-268073 chr18:268061-268072 chr18:268062-268073
15	ATF3	chr18:267904-268183	GM12878	blood:	n/a	chr18:268062-268075 chr18:268064-268072 chr18:268065-268072 chr18:268061-268076 chr18:268062-268075 chr18:268062-268072 chr18:268061-268074 chr18:268062-268072 chr18:268053-268073 chr18:268061-268072 chr18:268062-268073
16	BACH1	chr18:267979-268355	H1-hESC	embryonic stem cell:	n/a	n/a
17	BATF	chr18:267919-268509	GM12878	blood:	n/a	n/a
18	BCL11A	chr18:267902-268405	GM12878	blood:	n/a	chr18:268153-268162 chr18:268049-268062
19	BCL3	chr18:267793-268331	A549	lung:	n/a	chr18:268153-268162 chr18:268049-268062
20	BCL3	chr18:267887-268393	GM12878	blood:	n/a	chr18:268153-268162 chr18:268049-268062
21	BCL3	chr18:267839-268276	A549	lung:	n/a	chr18:268153-268162 chr18:268049-268062
22	BCLAF1	chr18:267773-268502	GM12878	blood:	n/a	chr18:268153-268162 chr18:268049-268062
23	BCLAF1	chr18:267804-269077	GM12878	blood:	n/a	chr18:268153-268162 chr18:268049-268062
24	BHLHE40	chr18:268183-268376	A549	lung:	n/a	n/a
25	BHLHE40	chr18:267862-268321	K562	blood:	n/a	chr18:268046-268062 chr18:268047-268063
26	BHLHE40	chr18:267842-268511	GM12878	blood:	n/a	chr18:268046-268062 chr18:268047-268063
27	BHLHE40	chr18:267852-268323	HepG2	liver:	n/a	chr18:268046-268062 chr18:268047-268063
28	BRCA1	chr18:267974-268246	H1-hESC	embryonic stem cell:	n/a	n/a
29	BRCA1	chr18:267916-268222	HepG2	liver:	n/a	n/a
30	BRCA1	chr18:267927-268244	Hela-S3	cervix:	n/a	n/a
31	CBX3	chr18:268653-269146	K562	blood:	n/a	n/a
32	CBX3	chr18:271857-272187	K562	blood:	n/a	n/a
33	CBX3	chr18:267877-268270	K562	blood:	n/a	n/a
34	CBX3	chr18:267701-268641	K562	blood:	n/a	n/a
35	CCNT2	chr18:267628-268513	K562	blood:	n/a	n/a
36	CEBPB	chr18:267818-268289	K562	blood:	n/a	n/a
37	CEBPB	chr18:227512-227598	K562	blood:	n/a	chr18:227540-227551 chr18:227540-227553
38	CEBPB	chr18:268092-268184	H1-hESC	embryonic stem cell:	n/a	n/a
39	CEBPB	chr18:227537-227565	HepG2	liver:	n/a	chr18:227540-227551 chr18:227540-227553
40	CEBPB	chr18:269678-269795	K562	blood:	n/a	n/a
41	CEBPB	chr18:267829-268561	GM12878	blood:	n/a	n/a
42	CEBPB	chr18:269538-269869	K562	blood:	n/a	n/a
43	CEBPD	chr18:267595-268288	HepG2	liver:	n/a	n/a
44	CEBPD	chr18:267772-268726	K562	blood:	n/a	n/a
45	CHD1	chr18:267960-268495	GM12878	blood:	n/a	chr18:268135-268145
46	CHD1	chr18:268180-268771	H1-hESC	embryonic stem cell:	n/a	n/a
47	CHD2	chr18:267902-268387	GM12878	blood:	n/a	chr18:268135-268145
48	CHD2	chr18:267987-268408	K562	blood:	n/a	chr18:268135-268145
49	CHD2	chr18:267938-268278	Hela-S3	cervix:	n/a	chr18:268135-268145
50	CHD2	chr18:267821-268371	H1-hESC	embryonic stem cell:	n/a	chr18:268135-268145

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr18:268135-268185	LNCaP	prostate:	n/a
2	chr18:268601-268651	GM06990	blood:	n/a
3	chr18:271673-271723	HIPEpiC	eye:	n/a
4	chr18:268184-268234	A549	lung:	n/a
5	chr18:268135-268185	SKMC	muscle:	n/a
6	chr18:267711-267761	Hela-S3	cervix:	n/a
7	chr18:267711-267761	AG09309	skin:	n/a
8	chr18:268381-268431	SKMC	muscle:	n/a
9	chr18:264576-264626	HRCEpiC	kidney:	n/a
10	chr18:268184-268234	PFSK-1	brain:	n/a
11	chr18:271673-271723	LNCaP	prostate:	n/a
12	chr18:268256-268306	ECC-1	luminal epithelium:	n/a
13	chr18:268278-268328	HRPEpiC	eye:	n/a
14	chr18:268068-268118	Jurkat	blood:	n/a
15	chr18:268278-268328	HepG2	liver:	n/a
16	chr18:268135-268185	HRPEpiC	eye:	n/a
17	chr18:271673-271723	HL-60	blood:	n/a
18	chr18:268601-268651	PANC-1	pancreas:	n/a
19	chr18:268601-268651	NHBE	bronchial:	n/a
20	chr18:268256-268306	PANC-1	pancreas:	n/a
21	chr18:268601-268651	AG09319	gingival:	n/a
22	chr18:268184-268234	HEK293	kidney:	embryo
23	chr18:268278-268328	GM12878	blood:	n/a
24	chr18:267637-267687	T-47D	breast:	n/a
25	chr18:268031-268081	HCT-116	colon:	n/a
26	chr18:268166-268216	SK-N-MC	brain:	n/a
27	chr18:268135-268185	AG04450	lung:	fetal
28	chr18:268278-268328	SK-N-SH_RA	brain:	n/a
29	chr18:268184-268234	HIPEpiC	eye:	n/a
30	chr18:268031-268081	HCF	heart:	n/a
31	chr18:264576-264626	AG09319	gingival:	n/a
32	chr18:264576-264626	AG09309	skin:	n/a
33	chr18:268068-268118	HCM	heart:	n/a
34	chr18:268135-268185	BE2_C	brain:	n/a
35	chr18:268031-268081	SK-N-SH	brain:	n/a
36	chr18:268381-268431	MCF10A-Er-Src	breast:	n/a
37	chr18:268256-268306	PFSK-1	brain:	n/a
38	chr18:268131-268181	LNCaP	prostate:	n/a
39	chr18:268601-268651	Hepatocyte	liver:	n/a
40	chr18:268068-268118	SK-N-MC	brain:	n/a
41	chr18:267711-267761	T-47D	breast:	n/a
42	chr18:268068-268118	NB4	blood:	n/a
43	chr18:268135-268185	PrEC	prostate:	n/a
44	chr18:268381-268431	PFSK-1	brain:	n/a
45	chr18:267637-267687	GM12892	blood:	n/a
46	chr18:268256-268306	RPTEC	kidney:	n/a
47	chr18:268131-268181	NHBE	bronchial:	n/a
48	chr18:271673-271723	HMEC	breast:	n/a
49	chr18:268031-268081	HepG2	liver:	n/a
50	chr18:268131-268181	HCM	heart:	n/a

No.	Distal block	Cell Line	Cell type
1	chr18:226011..228697-chr18:258254..260700,2	K562	blood:
2	chr18:233093..235805-chr18:238186..240596,2	MCF-7	breast:
3	chr17:58235617..58237608-chr18:268202..269943,2	MCF-7	breast:
4	chr18:228215..230385-chr18:232509..234575,2	K562	blood:
5	chr1:147806762..147807332-chr18:268331..269254,2	Hela-S3	cervix:
6	chr18:245734..247470-chr18:268204..270574,2	K562	blood:
7	chr18:225339..228063-chr18:231717..233482,2	K562	blood:
8	chr18:240829..243989-chr18:256150..258223,3	K562	blood:
9	chr18:253259..255595-chr18:265697..268644,2	K562	blood:
10	chr18:248724..251192-chr18:298155..299664,2	K562	blood:
11	chr18:266113..269077-chr18:710034..713387,3	K562	blood:
12	chr18:269454..272332-chr18:624341..626546,2	K562	blood:
13	chr18:273687..277951-chr18:283700..285982,3	K562	blood:
14	chr18:245161..246691-chr18:267290..268798,2	MCF-7	breast:
15	chr18:273600..276346-chr18:278461..281773,3	MCF-7	breast:
16	chr18:266563..269513-chr18:596555..599263,2	K562	blood:
17	chr18:226011..228697-chr18:258254..260700,2	K562	blood:
18	chr18:250537..252163-chr18:257039..259067,2	MCF-7	breast:
19	chr18:231648..233697-chr18:238465..240469,2	K562	blood:
20	chr18:254095..260758-chr18:263922..270842,11	K562	blood:
21	chr18:248314..250346-chr18:271820..273799,2	K562	blood:
22	chr18:269653..272578-chr18:297355..299675,2	K562	blood:
23	chr18:240829..243989-chr18:256150..258223,3	K562	blood:
24	chr18:250843..253350-chr18:266351..269442,3	MCF-7	breast:
25	chr18:274502..277151-chr18:285374..288213,2	K562	blood:
26	chr18:211515..213254-chr18:241268..242902,2	K562	blood:
27	chr18:267452..268053-chr9:134269416..134270075,2	Hela-S3	cervix:
28	chr18:250537..252163-chr18:257039..259067,2	MCF-7	breast:
29	chr18:257542..263185-chr18:266000..270349,8	MCF-7	breast:
30	chr18:264152..266955-chr18:267576..271730,4	MCF-7	breast:
31	chr18:228215..230385-chr18:232509..234575,2	K562	blood:
32	chr18:157295..159730-chr18:266988..268701,2	MCF-7	breast:
33	chr18:245161..246691-chr18:267290..268798,2	MCF-7	breast:
34	chr18:110119..112537-chr18:266561..268595,2	MCF-7	breast:
35	chr18:273825..276341-chr18:276906..279543,2	K562	blood:
36	chr18:248531..251029-chr18:267645..269804,2	K562	blood:
37	chr18:249334..252987-chr18:265974..268103,4	MCF-7	breast:
38	chr18:286089..286649-chr18:19535847..19536611,2	K562	blood:
39	chr18:250843..253350-chr18:266351..269442,3	MCF-7	breast:
40	chr18:257542..263185-chr18:266000..270349,8	MCF-7	breast:
41	chr18:286191..286695-chr18:468859..469735,2	MCF-7	breast:
42	chr18:226421..229879-chr18:235133..238634,3	K562	blood:
43	chr18:266657..270720-chr18:273015..278448,7	MCF-7	breast:
44	chr18:269547..271961-chr18:280130..281760,2	K562	blood:
45	chr18:267460..269280-chr18:657302..659143,2	MCF-7	breast:
46	chr18:158012..160007-chr18:265808..268303,2	MCF-7	breast:
47	chr18:226491..228129-chr18:229681..231598,2	K562	blood:
48	chr18:222084..224693-chr18:231367..235268,3	K562	blood:
49	chr18:286140..286815-chr18:616539..617291,2	MCF-7	breast:
50	chr18:233093..235805-chr18:238186..240596,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-USP14-6	chr18:270815-271054	NONHSAT056835
2	lnc-USP14-3	chr18:268148-270278	ENSG00000263884.1
3	lnc-COLEC12-6	chr18:253324-253897	expReg_chr18_62_-

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	THOC1	hsa-miR-186-5p	chr18:225149-225174

Variant related genes	Relation type
THOC1	TF binding region
ENSG00000263884	TF binding region
THOC1	CpG island
ENSG00000263884	CpG island
ENSG00000176912	chromatin interactions
ENSG00000263884	chromatin interactions
ENSG00000236432	chromatin interactions
ENSG00000101557	chromatin interactions
ENSG00000176890	chromatin interactions
ENSG00000202408	chromatin interactions
ENSG00000132199	chromatin interactions
ENSG00000079134	chromatin interactions
ENSG00000130723	chromatin interactions
ENSG00000168958	chromatin interactions
ENSG00000079101	chromatin interactions
ENSG00000263006	chromatin interactions

Extended variants
information (count: 2135 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:2135 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs543467899	chr18:225017-225018	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs140489878	chr18:225027-225028	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs7227515	chr18:225051-225052	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs546555244	chr18:225052-225053	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs71352928	chr18:225081-225082	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs374193233	chr18:225101-225102	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs183259365	chr18:225116-225117	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs368677132	chr18:225119-225120	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs144118307	chr18:225237-225238	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs372438779	chr18:225303-225304	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs372103405	chr18:225324-225325	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs374747865	chr18:225372-225373	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs199869012	chr18:225393-225394	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs369124542	chr18:225431-225432	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs371767828	chr18:225442-225443	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs549511155	chr18:225588-225589	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs34774980	chr18:225592-225593	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs9950486	chr18:225608-225609	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs542855744	chr18:225610-225611	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs534734528	chr18:225614-225615	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs34905663	chr18:225620-225621	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs368876563	chr18:225637-225638	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs553324977	chr18:225773-225774	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs578262387	chr18:225814-225815	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs539324793	chr18:225874-225875	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs377507358	chr18:225948-225949	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs186948747	chr18:225950-225951	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs9950805	chr18:225964-225965	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs542784765	chr18:225984-225985	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs2236656	chr18:225985-225986	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs189881206	chr18:226000-226001	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs118007560	chr18:226011-226012	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs564893237	chr18:226029-226030	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs144901178	chr18:226055-226056	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs182094342	chr18:226073-226074	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs562734660	chr18:226086-226087	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs573479023	chr18:226152-226153	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs544244405	chr18:226210-226211	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs529934969	chr18:226215-226216	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs548381083	chr18:226219-226220	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs564487984	chr18:226259-226260	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs536031250	chr18:226267-226268	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs567802842	chr18:226268-226269	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs535117088	chr18:226334-226335	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs546733368	chr18:226431-226432	Strong transcription Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs533198709	chr18:226442-226443	Strong transcription Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs116731867	chr18:226459-226460	Strong transcription Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs537202	chr18:226485-226486	Strong transcription Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
49	rs187968454	chr18:226490-226491	Strong transcription Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs575879947	chr18:226497-226498	Strong transcription Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Esophageal cancer	21851588	CNVD
Myelofibrosis	22110671	CNVD
Heart disease	21282601	CNVD
Breast cancer	17899364	CNVD
Cancer	17160897	CNVD
Breast cancer	20409316	CNVD
Gastrointestinal cancer	17018589	CNVD
prenatal diagnosis	20453657	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Renal cell carcinoma	18765545	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	18172304	CNVD
Intellectual disability	22102821	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Acute myeloid leukemia	16864856	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Kartagener syndrome	16639409	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Cancer	21183584	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Human rectal carcinomas	16397240	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19150955	CNVD
Follicular lymphoma	20505157	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	18923191	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Trisomy 18 syndrome	17576883	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21785460	CNVD
lymphocytic leukemia	21291569	CNVD
Autism	20808228	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Barrett''s syndrome	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Multiple myeloma	17550852	CNVD
Cancer	20164919	CNVD
Amyotrophic lateral sclerosis	20685689	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Autism	21865298	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:1582 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:193400-227000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr18:195200-231200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr18:195400-228000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr18:195400-233000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:199800-251000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr18:208800-227200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr18:209200-228200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr18:209400-230000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr18:209400-230000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr18:210200-228000	Strong transcription	Osteobl	bone
11	chr18:210800-225400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr18:212000-256400	Weak transcription	Gastric	stomach
13	chr18:214400-251600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr18:214400-252000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr18:215800-244000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr18:217200-247000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr18:218000-229400	Weak transcription	Fetal Intestine Small	intestine
18	chr18:218000-267400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr18:218200-245400	Weak transcription	Aorta	Aorta
20	chr18:218400-245600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr18:218600-226000	Weak transcription	Thymus	Thymus
22	chr18:218600-226200	Weak transcription	Brain Germinal Matrix	brain
23	chr18:218600-226200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr18:218600-227600	Weak transcription	Fetal Stomach	stomach
25	chr18:218600-227600	Weak transcription	Lung	lung
26	chr18:218600-240800	Weak transcription	Spleen	Spleen
27	chr18:218600-244800	Weak transcription	Psoas Muscle	Psoas
28	chr18:218600-245200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr18:218600-245400	Weak transcription	Esophagus	oesophagus
30	chr18:218600-245600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr18:218600-245600	Weak transcription	Brain Angular Gyrus	brain
32	chr18:218600-248200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr18:218600-250400	Weak transcription	Colonic Mucosa	Colon
34	chr18:218600-261400	Weak transcription	Pancreas	Pancrea
35	chr18:218600-267200	Weak transcription	Stomach Mucosa	stomach
36	chr18:218800-241000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr18:218800-241400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr18:219000-225400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr18:219000-245400	Weak transcription	Small Intestine	intestine
40	chr18:219000-247200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr18:219000-251400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr18:219000-251600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr18:219000-267200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr18:219000-267200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr18:219800-227200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr18:219800-240400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr18:220200-227200	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr18:220200-228800	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr18:220400-244400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr18:221000-227000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links