Variant report
Variant | nsv915754 |
---|---|
Chromosome Location | chr12:34052409-34756196 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:4203)
- CpG islands (count:12159)
- Chromatin interactive region (count:87)
- LncRNA region (count:13)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr12:34174965-34175535 | K562 | blood: | n/a | chr12:34175026-34175042 chr12:34175027-34175043 |
2 | ARID3A | chr12:34417095-34417295 | K562 | blood: | n/a | n/a |
3 | ARID3A | chr12:34174917-34175527 | HepG2 | liver: | n/a | chr12:34175026-34175042 chr12:34175027-34175043 |
4 | ARID3A | chr12:34372445-34372838 | K562 | blood: | n/a | n/a |
5 | ARID3A | chr12:34186859-34187191 | K562 | blood: | n/a | chr12:34187070-34187086 chr12:34187069-34187085 |
6 | ARID3A | chr12:34367118-34367148 | K562 | blood: | n/a | n/a |
7 | ARID3A | chr12:34098056-34098330 | HepG2 | liver: | n/a | n/a |
8 | ARID3A | chr12:34276078-34276334 | K562 | blood: | n/a | n/a |
9 | ARID3A | chr12:34186930-34187207 | HepG2 | liver: | n/a | chr12:34187070-34187086 chr12:34187069-34187085 |
10 | ARID3A | chr12:34276092-34276305 | HepG2 | liver: | n/a | n/a |
11 | ATF1 | chr12:34276078-34276281 | K562 | blood: | n/a | n/a |
12 | ATF1 | chr12:34407159-34407233 | K562 | blood: | n/a | n/a |
13 | ATF1 | chr12:34175112-34175525 | K562 | blood: | n/a | n/a |
14 | ATF1 | chr12:34372443-34372838 | K562 | blood: | n/a | n/a |
15 | ATF1 | chr12:34340026-34340130 | K562 | blood: | n/a | n/a |
16 | ATF1 | chr12:34250260-34250470 | K562 | blood: | n/a | n/a |
17 | ATF1 | chr12:34280414-34280639 | K562 | blood: | n/a | n/a |
18 | ATF1 | chr12:34430831-34430993 | K562 | blood: | n/a | n/a |
19 | ATF2 | chr12:34175128-34175510 | H1-hESC | embryonic stem cell: | n/a | n/a |
20 | ATF2 | chr12:34175036-34175597 | GM12878 | blood: | n/a | n/a |
21 | ATF2 | chr12:34174909-34175573 | GM12878 | blood: | n/a | n/a |
22 | ATF2 | chr12:34175155-34175514 | H1-hESC | embryonic stem cell: | n/a | n/a |
23 | ATF3 | chr12:34280320-34280675 | K562 | blood: | n/a | n/a |
24 | ATF3 | chr12:34175027-34175625 | A549 | lung: | n/a | n/a |
25 | ATF3 | chr12:34372504-34372902 | A549 | lung: | n/a | n/a |
26 | ATF3 | chr12:34275984-34276254 | GM12878 | blood: | n/a | n/a |
27 | ATF3 | chr12:34372398-34372788 | A549 | lung: | n/a | n/a |
28 | ATF3 | chr12:34509280-34509455 | K562 | blood: | n/a | n/a |
29 | ATF3 | chr12:34509237-34509520 | K562 | blood: | n/a | n/a |
30 | ATF3 | chr12:34175051-34175608 | A549 | lung: | n/a | n/a |
31 | BACH1 | chr12:34429857-34430227 | K562 | blood: | n/a | n/a |
32 | BACH1 | chr12:34486593-34486711 | K562 | blood: | n/a | n/a |
33 | BACH1 | chr12:34186563-34186928 | H1-hESC | embryonic stem cell: | n/a | chr12:34186742-34186756 |
34 | BACH1 | chr12:34489607-34489683 | K562 | blood: | n/a | n/a |
35 | BACH1 | chr12:34500299-34500489 | K562 | blood: | n/a | n/a |
36 | BACH1 | chr12:34429537-34429559 | K562 | blood: | n/a | n/a |
37 | BACH1 | chr12:34369832-34370042 | K562 | blood: | n/a | n/a |
38 | BACH1 | chr12:34428886-34428914 | K562 | blood: | n/a | n/a |
39 | BACH1 | chr12:34417075-34417361 | K562 | blood: | n/a | n/a |
40 | BACH1 | chr12:34417965-34418172 | K562 | blood: | n/a | n/a |
41 | BACH1 | chr12:34186566-34186928 | K562 | blood: | n/a | chr12:34186742-34186756 |
42 | BATF | chr12:34387277-34387522 | GM12878 | blood: | n/a | n/a |
43 | BATF | chr12:34374801-34375081 | GM12878 | blood: | n/a | n/a |
44 | BATF | chr12:34207885-34208102 | GM12878 | blood: | n/a | n/a |
45 | BATF | chr12:34279173-34279432 | GM12878 | blood: | n/a | n/a |
46 | BATF | chr12:34175171-34175544 | GM12878 | blood: | n/a | n/a |
47 | BATF | chr12:34207658-34207839 | GM12878 | blood: | n/a | n/a |
48 | BATF | chr12:34372475-34372720 | GM12878 | blood: | n/a | n/a |
49 | BATF | chr12:34575259-34575544 | GM12878 | blood: | n/a | n/a |
50 | BATF | chr12:34575360-34575508 | GM12878 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr12:34445809-34445859 | Hela-S3 | cervix: | n/a |
2 | chr12:34443659-34443709 | GM12891 | blood: | n/a |
3 | chr12:34556037-34556087 | A549 | lung: | n/a |
4 | chr12:34318527-34318577 | HCM | heart: | n/a |
5 | chr12:34755315-34755365 | MCF10A-Er-Src | breast: | n/a |
6 | chr12:34488920-34488970 | NH-A | brain: | n/a |
7 | chr12:34527230-34527280 | CMK | blood: | n/a |
8 | chr12:34546775-34546825 | Caco-2 | colon: | n/a |
9 | chr12:34551994-34552044 | NH-A | brain: | n/a |
10 | chr12:34471040-34471090 | H1-hESC | embryonic stem cell: | embryo |
11 | chr12:34491090-34491140 | GM12891 | blood: | n/a |
12 | chr12:34754948-34754998 | HepG2 | liver: | n/a |
13 | chr12:34500640-34500690 | GM19239 | blood: | n/a |
14 | chr12:34372299-34372349 | GM19239 | blood: | n/a |
15 | chr12:34491090-34491140 | GM06990 | blood: | n/a |
16 | chr12:34554731-34554781 | U87 | brain: | n/a |
17 | chr12:34551489-34551539 | HCPEpiC | choroid plexus: | n/a |
18 | chr12:34488920-34488970 | HUVEC | blood vessel: | n/a |
19 | chr12:34548094-34548144 | ovcar-3 | ovarian: | n/a |
20 | chr12:34441774-34441824 | HRPEpiC | eye: | n/a |
21 | chr12:34445809-34445859 | Hela-S3 | cervix: | n/a |
22 | chr12:34443659-34443709 | GM12891 | blood: | n/a |
23 | chr12:34556037-34556087 | A549 | lung: | n/a |
24 | chr12:34318527-34318577 | HCM | heart: | n/a |
25 | chr12:34755315-34755365 | MCF10A-Er-Src | breast: | n/a |
26 | chr12:34488920-34488970 | NH-A | brain: | n/a |
27 | chr12:34527230-34527280 | CMK | blood: | n/a |
28 | chr12:34546775-34546825 | Caco-2 | colon: | n/a |
29 | chr12:34551994-34552044 | NH-A | brain: | n/a |
30 | chr12:34471040-34471090 | H1-hESC | embryonic stem cell: | embryo |
31 | chr12:34491090-34491140 | GM12891 | blood: | n/a |
32 | chr12:34754948-34754998 | HepG2 | liver: | n/a |
33 | chr12:34500640-34500690 | GM19239 | blood: | n/a |
34 | chr12:34372299-34372349 | GM19239 | blood: | n/a |
35 | chr12:34491090-34491140 | GM06990 | blood: | n/a |
36 | chr12:34554731-34554781 | U87 | brain: | n/a |
37 | chr12:34551489-34551539 | HCPEpiC | choroid plexus: | n/a |
38 | chr12:34488920-34488970 | HUVEC | blood vessel: | n/a |
39 | chr12:34548094-34548144 | ovcar-3 | ovarian: | n/a |
40 | chr12:34441774-34441824 | HRPEpiC | eye: | n/a |
41 | chr12:34537250-34537300 | NB4 | blood: | n/a |
42 | chr12:34442705-34442755 | SK-N-MC | brain: | n/a |
43 | chr12:34500585-34500635 | HMEC | breast: | n/a |
44 | chr12:34516072-34516122 | HUVEC | blood vessel: | n/a |
45 | chr12:34061681-34061731 | HAEpiC | amniotic membrane: | n/a |
46 | chr12:34532907-34532957 | HMEC | breast: | n/a |
47 | chr12:34495509-34495559 | GM12891 | blood: | n/a |
48 | chr12:34519837-34519887 | RPTEC | kidney: | n/a |
49 | chr12:34319740-34319790 | HNPCEpiC | eye: | n/a |
50 | chr12:34489827-34489877 | HCM | heart: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr12:34372145..34372649-chr9:79186173..79186679,2 | MCF-7 | breast: | |
2 | chr12:34427757..34428277-chr16:33958747..33959470,2 | MCF-7 | breast: | |
3 | chr1:91852330..91853034-chr12:34372628..34373167,11 | MCF-7 | breast: | |
4 | chr12:34544160..34546005-chr12:34547460..34549884,2 | K562 | blood: | |
5 | chr12:34275751..34276656-chr12:34370666..34371823,3 | MCF-7 | breast: | |
6 | chr12:34277684..34281105-chr12:34367413..34370316,3 | K562 | blood: | |
7 | chr12:34191233..34191868-chr12:34777963..34778741,2 | MCF-7 | breast: | |
8 | chr12:34279057..34280887-chr12:34440053..34441876,2 | K562 | blood: | |
9 | chr12:34497610..34503522-chr12:34523490..34528831,5 | K562 | blood: | |
10 | chr12:34275785..34276629-chr12:34339119..34339912,4 | MCF-7 | breast: | |
11 | chr12:34513093..34516192-chr12:34527570..34530403,3 | K562 | blood: | |
12 | chr12:34497610..34503522-chr12:34523490..34528831,5 | K562 | blood: | |
13 | chr12:34275679..34276702-chr12:34339057..34340086,5 | MCF-7 | breast: | |
14 | chr12:32908405..32909605-chr12:34174701..34175708,3 | MCF-7 | breast: | |
15 | chr12:34542219..34546005-chr12:34547286..34550175,4 | K562 | blood: | |
16 | chr1:91851338..91852967-chr12:34372628..34374131,2 | K562 | blood: | |
17 | chr12:34276079..34276686-chr12:34371078..34371813,4 | MCF-7 | breast: | |
18 | chr12:34275679..34276702-chr12:34339057..34340086,5 | MCF-7 | breast: | |
19 | chr12:34275776..34276287-chr12:34445928..34446780,2 | MCF-7 | breast: | |
20 | chr12:34543477..34545374-chr12:34550348..34552407,2 | K562 | blood: | |
21 | chr12:34097991..34100054-chr12:60091596..60093323,2 | MCF-7 | breast: | |
22 | chr12:34247375..34249864-chr12:34256794..34259523,2 | MCF-7 | breast: | |
23 | chr1:91852303..91852973-chr12:34372638..34373146,2 | HCT-116 | colon: | |
24 | chr12:34275803..34276751-chr12:34446099..34446740,3 | K562 | blood: | |
25 | chr12:34275776..34276287-chr12:34445928..34446780,2 | MCF-7 | breast: | |
26 | chr12:34277684..34280343-chr12:34367543..34370316,2 | K562 | blood: | |
27 | chr12:34497129..34499259-chr12:34508235..34509796,2 | K562 | blood: | |
28 | chr12:34487742..34489883-chr12:34492282..34495193,2 | K562 | blood: | |
29 | chr12:34145843..34147953-chr17:56709056..56711203,2 | MCF-7 | breast: | |
30 | chr12:34497467..34501951-chr12:34506676..34509735,4 | K562 | blood: | |
31 | chr12:34480099..34482680-chr12:34485043..34486658,2 | K562 | blood: | |
32 | chr1:91852282..91853087-chr12:34372625..34373157,6 | MCF-7 | breast: | |
33 | chr12:34098748..34102292-chr12:49653830..49659564,5 | MCF-7 | breast: | |
34 | chr1:91851344..91853074-chr12:34372634..34374167,5 | MCF-7 | breast: | |
35 | chr12:34053367..34054987-chr12:34055066..34057564,2 | MCF-7 | breast: | |
36 | chr12:32905758..32908162-chr12:34183695..34185541,2 | K562 | blood: | |
37 | chr12:34372136..34372665-chr12:127650606..127651138,2 | MCF-7 | breast: | |
38 | chr12:34472451..34474607-chr12:34482688..34484610,2 | K562 | blood: | |
39 | chr12:34098184..34100062-chr12:60091369..60093533,4 | MCF-7 | breast: | |
40 | chr12:34279057..34280887-chr12:34440053..34441876,2 | K562 | blood: | |
41 | chr12:34491491..34493706-chr12:34544208..34545803,2 | K562 | blood: | |
42 | chr1:91852355..91852916-chr12:34372634..34373168,4 | MCF-7 | breast: | |
43 | chr12:34241238..34243550-chr12:38853316..38855678,2 | MCF-7 | breast: | |
44 | chr12:34277684..34281105-chr12:34367413..34370316,3 | K562 | blood: | |
45 | chr12:34543477..34545374-chr12:34550348..34552407,2 | K562 | blood: | |
46 | chr12:34405769..34407368-chr12:38464924..38466718,2 | K562 | blood: | |
47 | chr12:34159858..34162837-chr12:34175347..34177852,2 | K562 | blood: | |
48 | chr12:34275803..34276751-chr12:34446099..34446740,3 | K562 | blood: | |
49 | chr12:34247375..34249864-chr12:34256794..34259523,2 | MCF-7 | breast: | |
50 | chr1:91851334..91853102-chr12:34372625..34374158,7 | MCF-7 | breast: |
(count:13 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-ALG10-5 | chr12:34421984-34422141 | NONHSAT027661 |
2 | lnc-ALG10-2 | chr12:34315112-34315173 | ENSG00000255628 |
3 | lnc-ALG10-3 | chr12:34315397-34315903 | NONHSAT027653 |
4 | lnc-ALG10-1 | chr12:34190307-34190583 | XLOC_009707 |
5 | lnc-ALG10-1 | chr12:34208992-34209394 | XLOC_009707 |
6 | lnc-ALG10-1 | chr12:34208992-34209394 | ENSG00000256538 |
7 | lnc-ALG10-1 | chr12:34190373-34190583 | ENSG00000256538 |
8 | lnc-ALG10-2 | chr12:34302774-34303105 | ENSG00000255628 |
9 | lnc-ALG10-4 | chr12:34402416-34402893 | NONHSAT140067 |
10 | lnc-ALG10-1 | chr12:34209496-34209704 | XLOC_009707 |
11 | lnc-ALG10-2 | chr12:34309116-34309255 | ENSG00000255628 |
12 | lnc-ALG10-5 | chr12:34430929-34431017 | NONHSAT027661 |
13 | lnc-ALG10-1 | chr12:34209496-34209675 | ENSG00000256538 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ALG10 | TF binding region |
ENSG00000245482 | TF binding region |
ENSG00000201624 | TF binding region |
ENSG00000264446 | TF binding region |
ENSG00000255652 | TF binding region |
ENSG00000256986 | TF binding region |
TUBB8P4 | TF binding region |
ENSG00000256614 | TF binding region |
ENSG00000255628 | TF binding region |
ENSG00000256538 | TF binding region |
ENSG00000272435 | TF binding region |
RNU6-472P | TF binding region |
ENSG00000258794 | TF binding region |
ALG10 | CpG island |
ENSG00000245482 | CpG island |
ENSG00000201624 | CpG island |
ENSG00000264446 | CpG island |
ENSG00000255652 | CpG island |
ENSG00000256986 | CpG island |
TUBB8P4 | CpG island |
ENSG00000256614 | CpG island |
ENSG00000255628 | CpG island |
ENSG00000256538 | CpG island |
ENSG00000272435 | CpG island |
RNU6-472P | CpG island |
ENSG00000258794 | CpG island |
ENSG00000241781 | chromatin interactions |
ENSG00000175548 | chromatin interactions |
ENSG00000258101 | chromatin interactions |
ENSG00000255652 | chromatin interactions |
ENSG00000239776 | chromatin interactions |
ENSG00000139131 | chromatin interactions |
ENSG00000139133 | chromatin interactions |
ENSG00000167553 | chromatin interactions |
ENSG00000226958 | chromatin interactions |
ENSG00000212195 | chromatin interactions |
PPARGC1A | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs527287660 | chr12:34060426-34060427 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs16921376 | chr12:34060436-34060437 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
3 | rs548124695 | chr12:34060440-34060441 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs566666277 | chr12:34060463-34060464 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs530210078 | chr12:34060537-34060538 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs550384211 | chr12:34060543-34060544 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs202000091 | chr12:34060559-34060560 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs16921377 | chr12:34060616-34060617 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
9 | rs545692888 | chr12:34060636-34060637 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs532684229 | chr12:34060682-34060683 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs552255304 | chr12:34060690-34060691 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs565692983 | chr12:34060722-34060723 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs534709535 | chr12:34060725-34060726 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs563695543 | chr12:34060734-34060735 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs35080890 | chr12:34060797-34060798 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs187937316 | chr12:34060831-34060832 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs567582769 | chr12:34060843-34060844 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs536045898 | chr12:34060887-34060888 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs556365956 | chr12:34060909-34060910 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs528066356 | chr12:34060943-34060944 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs577999823 | chr12:34061013-34061014 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs397850554 | chr12:34061027-34061028 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs33913747 | chr12:34061028-34061029 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs558250699 | chr12:34061033-34061034 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs2636089 | chr12:34061091-34061092 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
26 | rs572036920 | chr12:34061098-34061099 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs73101262 | chr12:34061178-34061179 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
28 | rs561549953 | chr12:34061229-34061230 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs546324030 | chr12:34061247-34061248 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs530463928 | chr12:34061257-34061258 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs191238833 | chr12:34061260-34061261 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs563857112 | chr12:34061269-34061270 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs532605445 | chr12:34061271-34061272 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs4143174 | chr12:34061277-34061278 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
35 | rs200475543 | chr12:34061320-34061321 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs182232151 | chr12:34061322-34061323 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs528448291 | chr12:34061372-34061373 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs548215040 | chr12:34061380-34061381 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs4143173 | chr12:34061383-34061384 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs186836512 | chr12:34061386-34061387 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs150351618 | chr12:34061397-34061398 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs192749610 | chr12:34061433-34061434 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs11052992 | chr12:34061556-34061557 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs144119001 | chr12:34061560-34061561 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs3884210 | chr12:34061561-34061562 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs112390580 | chr12:34061567-34061568 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs142709166 | chr12:34061587-34061588 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs73101263 | chr12:34061592-34061593 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
49 | rs80202296 | chr12:34061605-34061606 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs374332415 | chr12:34061618-34061619 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Wilms tumour | 21544195 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
T-cell acute lymphoblastic leukemia | 20065082 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Breast cancer | 21264507 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Cancer | 16751803 | CNVD |
Testicular cancer | 18059402 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Seminomas | 18059402 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Lung cancer | 20668451 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Malaria | 21533027 | CNVD |
Chronic lymphocytic leukemia | 22228453 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Chronic lymphocytic leukemia | 21670202 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Cancer | 20164919 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
Breast cancer | 21509527 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Cancer | 21129771 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Breast cancer | 17133270 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Chordoma | 18071362 | CNVD |
Lung cancer | 18438408 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Intellectual disability | 22045946 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Breast cancer | 21364760 | CNVD |
small cell lung cancer | 20016488 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Schizophrenia | 20967226 | CNVD |
Non-syndromic sensorineural hearing loss | 19587683 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Bipolar disorder | 19214233 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:34060400-34063400 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
2 | chr12:34061200-34062800 | Enhancers | HUES48 Cell Line | embryonic stem cell |
3 | chr12:34061200-34062800 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
4 | chr12:34061400-34062800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
5 | chr12:34061400-34062800 | Enhancers | HUES64 Cell Line | embryonic stem cell |
6 | chr12:34061400-34063400 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
7 | chr12:34061600-34062600 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
8 | chr12:34061800-34062000 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
9 | chr12:34061800-34062800 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
10 | chr12:34062000-34062400 | Flanking Active TSS | iPS-20b Cell Line | embryonic stem cell |
11 | chr12:34062000-34062800 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
12 | chr12:34062400-34062600 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
13 | chr12:34062800-34067600 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
14 | chr12:34067600-34068000 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
15 | chr12:34067600-34068000 | Enhancers | HUES48 Cell Line | embryonic stem cell |
16 | chr12:34090000-34090400 | Enhancers | Liver | Liver |
17 | chr12:34090400-34090800 | Weak transcription | Liver | Liver |
18 | chr12:34090800-34092000 | Enhancers | Liver | Liver |
19 | chr12:34092000-34096800 | Weak transcription | Liver | Liver |
20 | chr12:34093800-34130400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
21 | chr12:34096800-34098000 | Enhancers | HMEC | breast |
22 | chr12:34096800-34098200 | Enhancers | Liver | Liver |
23 | chr12:34097800-34098200 | Enhancers | HUES6 Cell Line | embryonic stem cell |
24 | chr12:34097800-34098400 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
25 | chr12:34098200-34098600 | Flanking Active TSS | Liver | Liver |
26 | chr12:34098600-34098800 | Enhancers | Liver | Liver |
27 | chr12:34099800-34100000 | ZNF genes & repeats | Psoas Muscle | Psoas |
28 | chr12:34120200-34120800 | Enhancers | HMEC | breast |
29 | chr12:34120400-34120800 | Enhancers | NHEK | skin |
30 | chr12:34127800-34128000 | Flanking Bivalent TSS/Enh | ES-UCSF4 Cell Line | embryonic stem cell |
31 | chr12:34130400-34130800 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
32 | chr12:34130800-34141200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
33 | chr12:34131200-34131800 | Enhancers | Liver | Liver |
34 | chr12:34140600-34142000 | Enhancers | HMEC | breast |
35 | chr12:34141000-34142400 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
36 | chr12:34141000-34142800 | Enhancers | NHEK | skin |
37 | chr12:34141200-34142000 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
38 | chr12:34141400-34142000 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
39 | chr12:34141800-34142600 | Enhancers | HUVEC | blood vessel |
40 | chr12:34141800-34142800 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
41 | chr12:34142000-34142800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
42 | chr12:34142000-34146800 | Weak transcription | HMEC | breast |
43 | chr12:34142000-34147200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
44 | chr12:34142400-34147400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
45 | chr12:34142800-34143000 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
46 | chr12:34142800-34147400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
47 | chr12:34142800-34147400 | Weak transcription | NHEK | skin |
48 | chr12:34143000-34149600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
49 | chr12:34146800-34148400 | Enhancers | HMEC | breast |
50 | chr12:34147200-34148800 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |