Variant report

Variant	nsv916312
Chromosome Location	chrX:155005015-155120625
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:603)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:603 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chrX:155110700-155111118	GM12878	blood:	n/a	n/a
2	ATF2	chrX:155106295-155106691	GM12878	blood:	n/a	n/a
3	ATF3	chrX:155049878-155050047	K562	blood:	n/a	n/a
4	ATF3	chrX:155110793-155111031	K562	blood:	n/a	n/a
5	ATF3	chrX:155049846-155050087	K562	blood:	n/a	n/a
6	ATF3	chrX:155117821-155118206	K562	blood:	n/a	n/a
7	ATF3	chrX:155117896-155118116	K562	blood:	n/a	n/a
8	ATF3	chrX:155049810-155050080	H1-hESC	embryonic stem cell:	n/a	n/a
9	BCLAF1	chrX:155110613-155111149	GM12878	blood:	n/a	chrX:155111130-155111143
10	BCLAF1	chrX:155110620-155111034	GM12878	blood:	n/a	n/a
11	CBX3	chrX:155117763-155118332	HCT-116	colon:	n/a	n/a
12	CBX3	chrX:155110478-155111375	K562	blood:	n/a	n/a
13	CBX3	chrX:155097474-155097882	K562	blood:	n/a	n/a
14	CBX3	chrX:155117729-155118210	HCT-116	colon:	n/a	n/a
15	CBX3	chrX:155097539-155097798	K562	blood:	n/a	n/a
16	CEBPB	chrX:155008503-155008956	MCF-7	breast:	n/a	n/a
17	CEBPB	chrX:155049796-155050155	MCF-7	breast:	n/a	n/a
18	CEBPB	chrX:155008478-155008899	MCF-7	breast:	n/a	n/a
19	CEBPD	chrX:155110955-155111174	HepG2	liver:	n/a	n/a
20	CREB1	chrX:155110647-155111682	GM12878	blood:	n/a	chrX:155111461-155111474
21	CREB1	chrX:155110712-155111544	HepG2	liver:	n/a	chrX:155111461-155111474
22	CREB1	chrX:155110547-155111661	HepG2	liver:	n/a	chrX:155111461-155111474
23	CREB1	chrX:155102854-155103248	K562	blood:	n/a	n/a
24	CREB1	chrX:155110556-155111675	K562	blood:	n/a	chrX:155111461-155111474
25	CREB1	chrX:155110725-155111683	H1-hESC	embryonic stem cell:	n/a	chrX:155111461-155111474
26	CREB1	chrX:155110728-155111031	ECC-1	luminal epithelium:	n/a	n/a
27	CREB1	chrX:155110661-155111229	A549	lung:	n/a	n/a
28	CREB1	chrX:155110616-155111646	K562	blood:	n/a	chrX:155111461-155111474
29	CREB1	chrX:155102863-155103160	H1-hESC	embryonic stem cell:	n/a	n/a
30	CREB1	chrX:155110706-155111718	H1-hESC	embryonic stem cell:	n/a	chrX:155111461-155111474
31	CREB1	chrX:155110727-155111073	A549	lung:	n/a	n/a
32	CTCF	chrX:155052870-155052934	GM10248	blood:	n/a	n/a
33	CTCF	chrX:155039295-155039337	LNCaP	prostate:	n/a	n/a
34	CTCF	chrX:155049868-155050100	GM19238	blood:	n/a	n/a
35	CTCF	chrX:155049846-155050126	ProgFib	skin:	n/a	n/a
36	CTCF	chrX:155049851-155050087	SK-N-SH_RA	brain:	n/a	n/a
37	CTCF	chrX:155049829-155050103	K562	blood:	n/a	n/a
38	CTCF	chrX:155087382-155087622	HUVEC	blood vessel:	n/a	n/a
39	CTCF	chrX:155090556-155090668	ProgFib	skin:	n/a	n/a
40	CTCF	chrX:155049318-155049326	ProgFib	skin:	n/a	n/a
41	CTCF	chrX:155049884-155050121	HepG2	liver:	n/a	n/a
42	CTCF	chrX:155041453-155041570	LNCaP	prostate:	n/a	n/a
43	CTCF	chrX:155049384-155049446	A549	lung:	n/a	n/a
44	CTCF	chrX:155119243-155119299	LNCaP	prostate:	n/a	n/a
45	CTCF	chrX:155087404-155087535	GM10266	blood:	n/a	n/a
46	CTCF	chrX:155087220-155087738	SK-N-SH	brain:	n/a	n/a
47	CTCF	chrX:155049876-155050112	GM13977	blood:	n/a	n/a
48	CTCF	chrX:155087361-155087599	LNCaP	prostate:	n/a	n/a
49	CTCF	chrX:155087438-155087517	Lung_OC	lung:	n/a	n/a
50	CTCF	chrX:155094432-155094596	MCF-7	breast:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMLHE-3	chrX:155058248-155059239	NONHSAT139246
2	lnc-VAMP7-2	chrX:155105299-155105548	NONHSAT139247

No data

Variant related genes	Relation type
AMDP1	TF binding region
VAMP7	TF binding region
DPH3P2	TF binding region

Extended variants
information (count: 429 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:429 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs700439	chrX:155005254-155005255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs368817703	chrX:155005260-155005261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs555474944	chrX:155005373-155005374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs181367997	chrX:155005490-155005491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs115527714	chrX:155005529-155005530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs372901988	chrX:155005594-155005595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs55857040	chrX:155005767-155005768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs185554908	chrX:155005770-155005771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs189966262	chrX:155005830-155005831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs565529923	chrX:155005966-155005967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs700438	chrX:155006050-155006051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs372605537	chrX:155006144-155006145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs185686166	chrX:155006179-155006180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs192124003	chrX:155006213-155006214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs138154931	chrX:155006257-155006258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs560527136	chrX:155006263-155006264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs184016942	chrX:155006344-155006345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs35186479	chrX:155006385-155006386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs187722249	chrX:155006410-155006411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs374712989	chrX:155006415-155006416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs192652869	chrX:155006479-155006480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs569925172	chrX:155006506-155006507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs182171259	chrX:155006610-155006611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs5940574	chrX:155006623-155006624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs147279550	chrX:155006716-155006717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs186025918	chrX:155008643-155008644	Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs191777059	chrX:155008653-155008654	Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs700444	chrX:155008671-155008672	Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs187574392	chrX:155008832-155008833	Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs149660901	chrX:155008848-155008849	Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs191853363	chrX:155008930-155008931	Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs182337175	chrX:155008972-155008973	Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs146705552	chrX:155008996-155008997	Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs532115660	chrX:155009007-155009008	Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs700445	chrX:155009102-155009103	Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs371317088	chrX:155009104-155009105	Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs700446	chrX:155009225-155009226	Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs35417703	chrX:155009340-155009341	Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs368167098	chrX:155009399-155009400	Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs373680397	chrX:155009422-155009423	Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs186775644	chrX:155009467-155009468	Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs190398915	chrX:155009498-155009499	Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs188118050	chrX:155010654-155010655	Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs369566409	chrX:155010725-155010726	Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs181310132	chrX:155010773-155010774	Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs367906693	chrX:155010774-155010775	Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs58162650	chrX:155010789-155010790	Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs199587051	chrX:155010790-155010791	Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs111830242	chrX:155010841-155010842	Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs28619336	chrX:155010846-155010847	Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:1)

Disease	PMID	Source
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:643 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154998600-155005400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chrX:154998600-155005600	Weak transcription	Ovary	ovary
3	chrX:155004200-155005400	Weak transcription	Fetal Stomach	stomach
4	chrX:155004400-155006000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chrX:155004600-155006800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chrX:155008600-155009600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chrX:155010600-155011000	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chrX:155049000-155049600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chrX:155049200-155049800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chrX:155049200-155050000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chrX:155049200-155050200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chrX:155049400-155049800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chrX:155049400-155050400	Enhancers	HMEC	breast
14	chrX:155049800-155050000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chrX:155049800-155050400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chrX:155071200-155071600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chrX:155071200-155073000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chrX:155071600-155072600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chrX:155072600-155072800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chrX:155072600-155073000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
21	chrX:155074800-155075200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chrX:155103800-155104000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
23	chrX:155103800-155105400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chrX:155104000-155104200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
25	chrX:155104000-155104200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
26	chrX:155104000-155104200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chrX:155104000-155104200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
28	chrX:155104000-155104200	Active TSS	Brain Hippocampus Middle	brain
29	chrX:155104000-155104600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chrX:155104000-155104600	Active TSS	Brain Anterior Caudate	brain
31	chrX:155104000-155104600	Active TSS	Osteobl	bone
32	chrX:155104000-155104800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
33	chrX:155104000-155104800	Active TSS	Ovary	ovary
34	chrX:155104200-155104400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
35	chrX:155104200-155104400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
36	chrX:155104200-155104400	Bivalent Enhancer	Fetal Muscle Leg	muscle
37	chrX:155104200-155104600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chrX:155104200-155104600	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
39	chrX:155104200-155104600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chrX:155104200-155104600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
41	chrX:155104200-155104600	Bivalent Enhancer	Lung	lung
42	chrX:155104200-155104600	Flanking Active TSS	Pancreas	Pancrea
43	chrX:155104200-155104600	Active TSS	Right Atrium	heart
44	chrX:155104200-155104600	Active TSS	HMEC	breast
45	chrX:155104200-155104600	Active TSS	HSMMtube	muscle
46	chrX:155104200-155104800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
47	chrX:155104200-155104800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chrX:155104200-155104800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chrX:155104200-155104800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
50	chrX:155104200-155104800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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