Variant report

Variant	nsv917422
Chromosome Location	chr6:162541151-163050543
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:162857639-162857816	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:162671087-162671724	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:162794306-162794665	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:162910482-162910786	HepG2	liver:	n/a	n/a
5	ATF1	chr6:162784797-162785113	K562	blood:	n/a	n/a
6	ATF1	chr6:162782228-162782581	K562	blood:	n/a	n/a
7	ATF1	chr6:162812215-162812339	K562	blood:	n/a	n/a
8	ATF1	chr6:162812647-162812847	K562	blood:	n/a	n/a
9	ATF1	chr6:163037119-163037243	K562	blood:	n/a	n/a
10	ATF2	chr6:163042363-163042635	GM12878	blood:	n/a	n/a
11	ATF3	chr6:162784742-162785052	K562	blood:	n/a	n/a
12	ATF3	chr6:163042298-163042684	HCT-116	colon:	n/a	n/a
13	BACH1	chr6:162975725-162976098	K562	blood:	n/a	n/a
14	BATF	chr6:163042347-163042655	GM12878	blood:	n/a	chr6:163042519-163042530
15	BATF	chr6:163042398-163042636	GM12878	blood:	n/a	chr6:163042519-163042530
16	BHLHE40	chr6:162578294-162578454	GM12878	blood:	n/a	n/a
17	BHLHE40	chr6:163042376-163042676	GM12878	blood:	n/a	n/a
18	BHLHE40	chr6:162899266-162899534	GM12878	blood:	n/a	n/a
19	BHLHE40	chr6:162599602-162599788	HepG2	liver:	n/a	chr6:162599639-162599660 chr6:162599645-162599654 chr6:162599645-162599654 chr6:162599643-162599656 chr6:162599644-162599653
20	BHLHE40	chr6:162576834-162576960	GM12878	blood:	n/a	n/a
21	BRCA1	chr6:162871740-162871751	H1-hESC	embryonic stem cell:	n/a	n/a
22	BRCA1	chr6:162658617-162658742	Hela-S3	cervix:	n/a	n/a
23	CBX3	chr6:162785538-162785848	K562	blood:	n/a	n/a
24	CBX3	chr6:162784775-162785143	K562	blood:	n/a	n/a
25	CCNT2	chr6:163001825-163002025	K562	blood:	n/a	n/a
26	CEBPB	chr6:162726891-162727117	HepG2	liver:	n/a	chr6:162726998-162727009 chr6:162726998-162727011 chr6:162727074-162727083 chr6:162727018-162727029 chr6:162727072-162727085
27	CEBPB	chr6:162871405-162871712	H1-hESC	embryonic stem cell:	n/a	chr6:162871605-162871616
28	CEBPB	chr6:162857280-162857594	HepG2	liver:	n/a	chr6:162857420-162857431
29	CEBPB	chr6:162568327-162569183	HepG2	liver:	n/a	chr6:162568989-162568998 chr6:162568989-162568998 chr6:162568989-162568998 chr6:162568987-162569000 chr6:162568988-162568999 chr6:162568987-162569000
30	CEBPB	chr6:162670249-162670473	HepG2	liver:	n/a	chr6:162670378-162670389
31	CEBPB	chr6:162596664-162596983	HepG2	liver:	n/a	chr6:162596833-162596844
32	CEBPB	chr6:162784873-162785124	H1-hESC	embryonic stem cell:	n/a	chr6:162785029-162785040
33	CEBPB	chr6:162652593-162652906	HepG2	liver:	n/a	chr6:162652751-162652762
34	CEBPB	chr6:163042252-163042579	MCF-7	breast:	n/a	n/a
35	CEBPB	chr6:162568823-162569168	A549	lung:	n/a	chr6:162568989-162568998 chr6:162568989-162568998 chr6:162568989-162568998 chr6:162568987-162569000 chr6:162568988-162568999 chr6:162568987-162569000
36	CEBPB	chr6:162861366-162861450	H1-hESC	embryonic stem cell:	n/a	chr6:162861390-162861403
37	CEBPB	chr6:162672448-162672478	HepG2	liver:	n/a	n/a
38	CEBPB	chr6:163042256-163042790	HCT-116	colon:	n/a	n/a
39	CEBPB	chr6:162596816-162596877	K562	blood:	n/a	chr6:162596833-162596844
40	CEBPB	chr6:162634250-162634590	HepG2	liver:	n/a	chr6:162634418-162634429
41	CEBPB	chr6:162857234-162857635	HepG2	liver:	n/a	chr6:162857420-162857431
42	CEBPB	chr6:162910493-162910789	HepG2	liver:	n/a	n/a
43	CEBPB	chr6:162876192-162876578	MCF-7	breast:	n/a	n/a
44	CEBPB	chr6:162568836-162569161	K562	blood:	n/a	chr6:162568989-162568998 chr6:162568989-162568998 chr6:162568989-162568998 chr6:162568987-162569000 chr6:162568988-162568999 chr6:162568987-162569000
45	CEBPB	chr6:162671564-162671902	A549	lung:	n/a	n/a
46	CEBPB	chr6:163036133-163036384	Hela-S3	cervix:	n/a	chr6:163036237-163036246 chr6:163036237-163036246 chr6:163036235-163036248 chr6:163036235-163036248 chr6:163036237-163036246 chr6:163036236-163036247
47	CEBPB	chr6:162910460-162910714	HepG2	liver:	n/a	n/a
48	CEBPB	chr6:162766335-162766614	A549	lung:	n/a	chr6:162766482-162766491 chr6:162766482-162766491 chr6:162766481-162766492 chr6:162766482-162766491 chr6:162766480-162766491 chr6:162766482-162766491 chr6:162766480-162766493
49	CEBPB	chr6:162605150-162605397	HepG2	liver:	n/a	chr6:162605266-162605277 chr6:162605266-162605279 chr6:162605266-162605279
50	CEBPB	chr6:163042384-163042569	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:162865171-162865221	Caco-2	colon:	n/a
2	chr6:162865258-162865308	AoSMC	blood vessel:	n/a
3	chr6:162964378-162964428	HEEpiC	esophagus:	n/a
4	chr6:163024624-163024674	HEEpiC	esophagus:	n/a
5	chr6:162683961-162684011	RPTEC	kidney:	n/a
6	chr6:162865258-162865308	PrEC	prostate:	n/a
7	chr6:162863505-162863555	SKMC	muscle:	n/a
8	chr6:162683857-162683907	HMEC	breast:	n/a
9	chr6:162684526-162684576	Hela-S3	cervix:	n/a
10	chr6:163024624-163024674	BJ	skin:	n/a
11	chr6:162864586-162864636	NB4	blood:	n/a
12	chr6:162683857-162683907	BE2_C	brain:	n/a
13	chr6:162964378-162964428	PANC-1	pancreas:	n/a
14	chr6:162683857-162683907	Hepatocyte	liver:	n/a
15	chr6:162863505-162863555	ProgFib	skin:	n/a
16	chr6:162684526-162684576	HMEC	breast:	n/a
17	chr6:162683881-162683931	AG04449	skin:	fetal
18	chr6:162865171-162865221	HL-60	blood:	n/a
19	chr6:162683881-162683931	ECC-1	luminal epithelium:	n/a
20	chr6:162684441-162684491	GM19239	blood:	n/a
21	chr6:162831837-162831887	HCF	heart:	n/a
22	chr6:162683857-162683907	SK-N-MC	brain:	n/a
23	chr6:162683857-162683907	HCF	heart:	n/a
24	chr6:162863505-162863555	HPAEpiC	pulmonary alveolar:	n/a
25	chr6:162683857-162683907	HRPEpiC	eye:	n/a
26	chr6:162683961-162684011	AG04450	lung:	fetal
27	chr6:163024624-163024674	ovcar-3	ovarian:	n/a
28	chr6:163024624-163024674	BE2_C	brain:	n/a
29	chr6:162683961-162684011	A549	lung:	n/a
30	chr6:162683857-162683907	K562	blood:	n/a
31	chr6:162864586-162864636	SKMC	muscle:	n/a
32	chr6:163024624-163024674	ECC-1	luminal epithelium:	n/a
33	chr6:162863505-162863555	GM12892	blood:	n/a
34	chr6:162683857-162683907	U87	brain:	n/a
35	chr6:162684441-162684491	HRPEpiC	eye:	n/a
36	chr6:163024624-163024674	NH-A	brain:	n/a
37	chr6:163024624-163024674	AG04450	lung:	fetal
38	chr6:162683857-162683907	A549	lung:	n/a
39	chr6:162683881-162683931	PrEC	prostate:	n/a
40	chr6:162684526-162684576	HepG2	liver:	n/a
41	chr6:162864586-162864636	HAEpiC	amniotic membrane:	n/a
42	chr6:162865258-162865308	SK-N-SH_RA	brain:	n/a
43	chr6:162964378-162964428	GM19239	blood:	n/a
44	chr6:162865258-162865308	HCT-116	colon:	n/a
45	chr6:162831837-162831887	HMEC	breast:	n/a
46	chr6:162865171-162865221	HNPCEpiC	eye:	n/a
47	chr6:162683857-162683907	HCT-116	colon:	n/a
48	chr6:162683857-162683907	AG04449	skin:	fetal
49	chr6:162865171-162865221	ECC-1	luminal epithelium:	n/a
50	chr6:162863505-162863555	SAEC	small airway:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:162763017..162765353-chr6:162767098..162769301,2	K562	blood:
2	chr6:162763017..162765353-chr6:162767098..162769301,2	K562	blood:
3	chr6:162820265..162823089-chr6:162827852..162829559,2	K562	blood:
4	chr6:162671180..162673472-chr6:162808694..162811227,2	K562	blood:
5	chr6:162643217..162645721-chr6:162646719..162648950,2	K562	blood:
6	chr6:162902802..162905070-chr6:162905406..162907332,2	K562	blood:
7	chr6:162799485..162803733-chr6:162804296..162807777,5	K562	blood:
8	chr6:162574333..162576032-chr6:162578404..162580150,2	K562	blood:
9	chr6:162613600..162615384-chr6:162617227..162618872,2	K562	blood:
10	chr6:162863367..162864320-chr6:163157771..163158572,4	MCF-7	breast:
11	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
12	chr6:162820265..162823089-chr6:162827852..162829559,2	K562	blood:
13	chr6:162613600..162615384-chr6:162617227..162618872,2	K562	blood:
14	chr6:162620407..162622935-chr6:162623040..162625617,2	K562	blood:
15	chr6:162960178..162962006-chr6:162962880..162965078,2	K562	blood:
16	chr6:162863816..162864618-chr6:163271757..163272511,2	MCF-7	breast:
17	chr6:162799485..162803733-chr6:162804296..162807777,5	K562	blood:
18	chr6:162643217..162645721-chr6:162646719..162648950,2	K562	blood:
19	chr6:162721411..162723925-chr6:162726328..162729326,2	K562	blood:
20	chr6:162902802..162905070-chr6:162905406..162907332,2	K562	blood:
21	chr6:163002877..163005708-chr6:163021910..163024946,3	K562	blood:
22	chr6:162661286..162663139-chr6:162673530..162675376,2	K562	blood:
23	chr6:163002877..163005708-chr6:163021910..163024946,3	K562	blood:
24	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
25	chr6:162666890..162668464-chr6:162670216..162671922,2	K562	blood:
26	chr6:162661286..162663139-chr6:162673530..162675376,2	K562	blood:
27	chr6:162671180..162673472-chr6:162808694..162811227,2	K562	blood:
28	chr6:162620407..162622935-chr6:162623040..162625617,2	K562	blood:
29	chr6:162768506..162770213-chr6:162786241..162788330,2	K562	blood:
30	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
31	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
32	chr6:162574333..162576032-chr6:162578404..162580150,2	K562	blood:
33	chr6:162666890..162668464-chr6:162670216..162671922,2	K562	blood:
34	chr6:162960178..162962006-chr6:162962880..162965078,2	K562	blood:
35	chr6:162721411..162723925-chr6:162726328..162729326,2	K562	blood:
36	chr6:162258059..162258779-chr6:162552660..162553528,2	MCF-7	breast:
37	chr6:162768506..162770213-chr6:162786241..162788330,2	K562	blood:

Variant related genes	Relation type
KRT8P44	TF binding region
KRT8P44	CpG island

Extended variants
information (count: 21064 )
Associated
traits (count: 108 )

Variant overlapped rSNPs/rCNVs (count:21064 , 50 per page) page: 1 2 3 4 5 6 7 ... 422

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs563813009	chr6:162541169-162541170	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs529419332	chr6:162541170-162541171	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs370234676	chr6:162541173-162541174	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs140951681	chr6:162541176-162541177	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs6921354	chr6:162541202-162541203	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs528830675	chr6:162541240-162541241	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs150192321	chr6:162541242-162541243	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs571311680	chr6:162541267-162541268	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs138845219	chr6:162541314-162541315	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs377470482	chr6:162541326-162541327	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs550365401	chr6:162541361-162541362	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs189565043	chr6:162541362-162541363	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs180948061	chr6:162541441-162541442	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs374505117	chr6:162541456-162541457	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs566406532	chr6:162541467-162541468	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs148944286	chr6:162541477-162541478	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs185952392	chr6:162541502-162541503	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs577573272	chr6:162541591-162541592	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs145957701	chr6:162541686-162541687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs876145	chr6:162541706-162541707	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs574095358	chr6:162541751-162541752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs111370356	chr6:162541774-162541775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs189612185	chr6:162541780-162541781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs138797232	chr6:162541805-162541806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539491184	chr6:162541807-162541808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs528792184	chr6:162541825-162541826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs181092931	chr6:162541827-162541828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs186278068	chr6:162541902-162541903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs76908639	chr6:162541917-162541918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs543875110	chr6:162541919-162541920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs142906763	chr6:162541983-162541984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs562085674	chr6:162542057-162542058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs9355980	chr6:162542084-162542085	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs10455898	chr6:162542086-162542087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs566367883	chr6:162542094-162542095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs117697666	chr6:162542113-162542114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs371449247	chr6:162542115-162542116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs552004705	chr6:162542130-162542131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs568833409	chr6:162542139-162542140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs190610887	chr6:162542188-162542189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs148060265	chr6:162542201-162542202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs9365374	chr6:162542222-162542223	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs9355981	chr6:162542479-162542480	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs553595894	chr6:162542491-162542492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs573436178	chr6:162542637-162542638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs545621976	chr6:162542641-162542642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs565552479	chr6:162542666-162542667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs576025711	chr6:162542677-162542678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs536485402	chr6:162542703-162542704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs551854583	chr6:162542738-162542739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:108)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Parkinson disease	21829596	CNVD
Schizophrenia	23813976	CNVD
Gastric cancer	22315472	CNVD
Autism	19404257	CNVD
Schizophrenia	20967226	CNVD
Schizophrenia	21346763	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
Autism	22495309	CNVD
Glioblastoma multiforme	21138945	CNVD
Ovarian cancer	22355333	CNVD
Schizophrenia	19805367	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:1693 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162536400-162543200	Weak transcription	Aorta	Aorta
2	chr6:162539800-162541200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:162539800-162541200	Enhancers	Fetal Muscle Leg	muscle
4	chr6:162539800-162541200	Enhancers	HSMM	muscle
5	chr6:162539800-162541400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr6:162539800-162541600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:162540000-162541200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:162540000-162541400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:162540200-162541200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:162540200-162541400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:162540200-162543400	Weak transcription	Brain Substantia Nigra	brain
12	chr6:162540800-162541400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:162540800-162543200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:162540800-162543200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:162540800-162543200	Weak transcription	Psoas Muscle	Psoas
16	chr6:162540800-162545800	Weak transcription	Right Atrium	heart
17	chr6:162541000-162545000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:162541200-162545200	Weak transcription	HSMM	muscle
19	chr6:162543200-162543400	ZNF genes & repeats	Aorta	Aorta
20	chr6:162543200-162543400	Enhancers	Psoas Muscle	Psoas
21	chr6:162543200-162543600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:162543200-162544000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:162543400-162543800	Enhancers	Brain Substantia Nigra	brain
24	chr6:162543800-162545200	Weak transcription	Brain Substantia Nigra	brain
25	chr6:162545000-162545400	Enhancers	Fetal Lung	lung
26	chr6:162545000-162546000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:162545000-162546200	Enhancers	NH-A	brain
28	chr6:162545200-162545600	Enhancers	Brain Substantia Nigra	brain
29	chr6:162545200-162546000	Enhancers	HSMM	muscle
30	chr6:162545800-162546200	Enhancers	Right Atrium	heart
31	chr6:162556600-162556800	Enhancers	Psoas Muscle	Psoas
32	chr6:162557400-162557800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:162560600-162561000	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr6:162560600-162562200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr6:162560600-162572000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:162561000-162561800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr6:162561800-162562000	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr6:162562800-162563400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr6:162563200-162563400	ZNF genes & repeats	Aorta	Aorta
40	chr6:162563200-162563400	Enhancers	Psoas Muscle	Psoas
41	chr6:162563400-162571400	Weak transcription	Psoas Muscle	Psoas
42	chr6:162563400-162574200	Weak transcription	Aorta	Aorta
43	chr6:162570600-162571000	Enhancers	H1 Cell Line	embryonic stem cell
44	chr6:162570600-162571000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:162570600-162571200	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr6:162570600-162571200	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr6:162570600-162571400	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr6:162570600-162571400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr6:162570600-162571400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr6:162570600-162571800	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links