Variant report

Variant	nsv9245
Chromosome Location	chr15:42441849-42453572
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:282)
CpG islands
(count:794)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:282 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:42450568-42451102	K562	blood:	n/a	n/a
2	ATF1	chr15:42450500-42450924	K562	blood:	n/a	n/a
3	ATF3	chr15:42450601-42450799	K562	blood:	n/a	n/a
4	ATF3	chr15:42450552-42450899	K562	blood:	n/a	n/a
5	BACH1	chr15:42450686-42450790	K562	blood:	n/a	n/a
6	BCL3	chr15:42452364-42452746	GM12878	blood:	n/a	n/a
7	BCL3	chr15:42446975-42447700	GM12878	blood:	n/a	n/a
8	BCL3	chr15:42446942-42447787	GM12878	blood:	n/a	n/a
9	BHLHE40	chr15:42450555-42450757	K562	blood:	n/a	n/a
10	CCNT2	chr15:42450317-42450766	K562	blood:	n/a	n/a
11	CEBPB	chr15:42448766-42448895	Hela-S3	cervix:	n/a	n/a
12	CEBPB	chr15:42450627-42450868	K562	blood:	n/a	n/a
13	CEBPB	chr15:42448796-42448803	HepG2	liver:	n/a	n/a
14	CHD2	chr15:42447101-42447122	GM12878	blood:	n/a	n/a
15	CTCF	chr15:42449020-42449170	SAEC	small airway:	n/a	chr15:42449074-42449095
16	CTCF	chr15:42442282-42442423	MCF-7	breast:	n/a	n/a
17	CTCF	chr15:42442240-42442390	K562	blood:	n/a	n/a
18	CTCF	chr15:42442320-42442470	A549	lung:	n/a	n/a
19	CTCF	chr15:42442220-42442370	HEEpiC	esophagus:	n/a	n/a
20	CTCF	chr15:42442220-42442370	GM12873	blood:	n/a	n/a
21	CTCF	chr15:42449099-42449100	LNCaP	prostate:	n/a	n/a
22	CTCF	chr15:42449000-42449150	HMEC	breast:	n/a	chr15:42449074-42449095
23	CTCF	chr15:42442317-42442402	NHEK	skin:	n/a	n/a
24	CTCF	chr15:42442240-42442390	WERI-Rb-1	eye:	n/a	n/a
25	CTCF	chr15:42448720-42448870	HEEpiC	esophagus:	n/a	n/a
26	CTCF	chr15:42442280-42442430	GM12871	blood:	n/a	n/a
27	CTCF	chr15:42442320-42442470	Hela-S3	cervix:	n/a	n/a
28	CTCF	chr15:42442300-42442450	HPAF	blood vessel:	n/a	n/a
29	CTCF	chr15:42448940-42449090	SAEC	small airway:	n/a	n/a
30	CTCF	chr15:42449020-42449170	NHEK	skin:	n/a	chr15:42449074-42449095
31	CTCF	chr15:42448560-42448710	GM12871	blood:	n/a	n/a
32	CTCF	chr15:42442285-42442454	Hela-S3	cervix:	n/a	n/a
33	CTCF	chr15:42442269-42442443	HepG2	liver:	n/a	n/a
34	CTCF	chr15:42448980-42449130	RPTEC	kidney:	n/a	chr15:42449074-42449095
35	CTCF	chr15:42442276-42442401	K562	blood:	n/a	n/a
36	CTCF	chr15:42448980-42449130	HRE	kidney:	n/a	chr15:42449074-42449095
37	CTCF	chr15:42442327-42442378	MCF-7	breast:	n/a	n/a
38	CTCF	chr15:42442299-42442447	MCF-7	breast:	n/a	n/a
39	CTCF	chr15:42448980-42449130	MCF-7	breast:	n/a	chr15:42449074-42449095
40	CTCF	chr15:42448820-42448970	WERI-Rb-1	eye:	n/a	n/a
41	CTCF	chr15:42442249-42442467	K562	blood:	n/a	n/a
42	CTCF	chr15:42442162-42442544	H1-hESC	embryonic stem cell:	n/a	n/a
43	CTCF	chr15:42442246-42442464	H1-hESC	embryonic stem cell:	n/a	n/a
44	CTCF	chr15:42442300-42442450	GM12872	blood:	n/a	n/a
45	CTCF	chr15:42448880-42449030	GM12871	blood:	n/a	n/a
46	CTCF	chr15:42442250-42442432	K562	blood:	n/a	n/a
47	CTCF	chr15:42448780-42448930	BE2_C	brain:	n/a	n/a
48	CTCF	chr15:42442234-42442459	K562	blood:	n/a	n/a
49	CTCF	chr15:42442240-42442462	K562	blood:	n/a	n/a
50	CTCF	chr15:42449060-42449210	HRPEpiC	eye:	n/a	chr15:42449074-42449095

(count:794 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:42447989-42448039	HRPEpiC	eye:	n/a
2	chr15:42447989-42448039	HRPEpiC	eye:	n/a
3	chr15:42449015-42449065	HCT-116	colon:	n/a
4	chr15:42447989-42448039	GM19239	blood:	n/a
5	chr15:42449916-42449966	H1-hESC	embryonic stem cell:	embryo
6	chr15:42449716-42449766	BJ	skin:	n/a
7	chr15:42450339-42450389	GM06990	blood:	n/a
8	chr15:42448259-42448309	GM06990	blood:	n/a
9	chr15:42450339-42450389	HMEC	breast:	n/a
10	chr15:42448079-42448129	HEEpiC	esophagus:	n/a
11	chr15:42448786-42448836	HEEpiC	esophagus:	n/a
12	chr15:42450339-42450389	CMK	blood:	n/a
13	chr15:42448259-42448309	HUVEC	blood vessel:	n/a
14	chr15:42451299-42451349	HCPEpiC	choroid plexus:	n/a
15	chr15:42448786-42448836	Caco-2	colon:	n/a
16	chr15:42451299-42451349	MCF10A-Er-Src	breast:	n/a
17	chr15:42448760-42448810	PFSK-1	brain:	n/a
18	chr15:42448786-42448836	MCF-7	breast:	n/a
19	chr15:42451299-42451349	Hela-S3	cervix:	n/a
20	chr15:42448259-42448309	AG09319	gingival:	n/a
21	chr15:42448234-42448284	HUVEC	blood vessel:	n/a
22	chr15:42450339-42450389	Hepatocyte	liver:	n/a
23	chr15:42447840-42447890	Caco-2	colon:	n/a
24	chr15:42448760-42448810	HRPEpiC	eye:	n/a
25	chr15:42448760-42448810	HMEC	breast:	n/a
26	chr15:42448259-42448309	HRE	kidney:	n/a
27	chr15:42450339-42450389	HEK293	kidney:	embryo
28	chr15:42451299-42451349	AG04450	lung:	fetal
29	chr15:42449643-42449693	SK-N-MC	brain:	n/a
30	chr15:42447840-42447890	Hepatocyte	liver:	n/a
31	chr15:42447989-42448039	HepG2	liver:	n/a
32	chr15:42449716-42449766	A549	lung:	n/a
33	chr15:42448079-42448129	NB4	blood:	n/a
34	chr15:42448760-42448810	GM12891	blood:	n/a
35	chr15:42450339-42450389	HL-60	blood:	n/a
36	chr15:42448259-42448309	AoSMC	blood vessel:	n/a
37	chr15:42451299-42451349	PrEC	prostate:	n/a
38	chr15:42449643-42449693	NB4	blood:	n/a
39	chr15:42448079-42448129	ovcar-3	ovarian:	n/a
40	chr15:42448079-42448129	IMR90	lung:	fetal
41	chr15:42450339-42450389	ProgFib	skin:	n/a
42	chr15:42448079-42448129	AG09309	skin:	n/a
43	chr15:42447989-42448039	Hepatocyte	liver:	n/a
44	chr15:42449716-42449766	SK-N-SH	brain:	n/a
45	chr15:42450339-42450389	GM12892	blood:	n/a
46	chr15:42447989-42448039	AG04450	lung:	fetal
47	chr15:42448259-42448309	AG04449	skin:	fetal
48	chr15:42448234-42448284	BJ	skin:	n/a
49	chr15:42448786-42448836	SK-N-SH_RA	brain:	n/a
50	chr15:42448259-42448309	Hela-S3	cervix:	n/a

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:42449739..42452702-chr15:42454816..42457885,4	K562	blood:
2	chr15:42441690..42443791-chr15:42450046..42452930,3	K562	blood:
3	chr15:42448110..42450231-chr15:42456166..42458018,2	MCF-7	breast:
4	chr15:42443129..42444925-chr15:42485873..42487790,2	MCF-7	breast:
5	chr15:42450192..42452285-chr15:42459355..42462158,2	K562	blood:
6	chr15:42430104..42432134-chr15:42441613..42443649,2	K562	blood:
7	chr15:42434313..42438019-chr15:42440873..42442932,3	K562	blood:
8	chr15:42441690..42443791-chr15:42450046..42452930,3	K562	blood:
9	chr15:42452722..42455427-chr15:42457119..42459983,4	K562	blood:
10	chr15:42429960..42432547-chr15:42445427..42447652,2	MCF-7	breast:
11	chr15:42451110..42452642-chr15:42456255..42457844,2	K562	blood:
12	chr15:42444865..42447535-chr15:42448992..42450632,2	K562	blood:
13	chr15:42426456..42429397-chr15:42449787..42451841,2	MCF-7	breast:
14	chr15:42440587..42442217-chr15:42443778..42446321,2	K562	blood:
15	chr15:42358352..42359263-chr15:42441667..42442628,3	MCF-7	breast:
16	chr15:42438588..42441073-chr15:42442171..42444536,4	MCF-7	breast:
17	chr15:42453296..42455922-chr15:42565346..42568176,2	K562	blood:
18	chr15:42440587..42442217-chr15:42443778..42446321,2	K562	blood:
19	chr15:42442020..42443791-chr15:42450046..42452930,2	K562	blood:
20	chr15:42375390..42378323-chr15:42449253..42451439,2	K562	blood:
21	chr15:42442020..42443791-chr15:42450046..42452930,2	K562	blood:
22	chr15:42444865..42447535-chr15:42448992..42450632,2	K562	blood:
23	chr15:42445910..42447999-chr15:42452272..42454986,2	K562	blood:
24	chr15:42444314..42447262-chr15:42447408..42450681,4	K562	blood:

No data

Variant related genes	Relation type
PLA2G4F	TF binding region
PLA2G4F	CpG island
ENSG00000214013	chromatin interactions
ENSG00000166887	chromatin interactions
ENSG00000103978	chromatin interactions
ENSG00000159337	chromatin interactions
ENSG00000168907	chromatin interactions

Extended variants
information (count: 579 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:579 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs373574653	chr15:42441907-42441908	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs571874061	chr15:42441968-42441969	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs199854900	chr15:42441974-42441975	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs140300563	chr15:42442003-42442004	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs150784108	chr15:42442004-42442005	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs137914268	chr15:42442007-42442008	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs149454729	chr15:42442020-42442021	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs144191503	chr15:42442027-42442028	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs148266549	chr15:42442036-42442037	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs142823029	chr15:42442043-42442044	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs376068077	chr15:42442044-42442045	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs372656864	chr15:42442070-42442071	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs550078653	chr15:42442073-42442074	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs375572272	chr15:42442074-42442075	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs371049040	chr15:42442082-42442083	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs536341713	chr15:42442110-42442111	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs552990249	chr15:42442111-42442112	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs181050343	chr15:42442113-42442114	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs534605337	chr15:42442116-42442117	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs557602045	chr15:42442139-42442140	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs11632558	chr15:42442171-42442172	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs577778926	chr15:42442177-42442178	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs60486546	chr15:42442186-42442187	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs12910069	chr15:42442207-42442208	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs563317981	chr15:42442236-42442237	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs370257164	chr15:42442237-42442238	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs540629727	chr15:42442248-42442249	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs374499366	chr15:42442257-42442258	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs542737377	chr15:42442276-42442277	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs185307359	chr15:42442278-42442279	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs12910286	chr15:42442340-42442341	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs370916410	chr15:42442345-42442346	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs201978785	chr15:42442353-42442354	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs375147680	chr15:42442368-42442369	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs376603960	chr15:42442383-42442384	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs552125995	chr15:42442406-42442407	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs60506946	chr15:42442422-42442423	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs531087847	chr15:42442429-42442430	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs551198952	chr15:42442437-42442438	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs567747018	chr15:42442441-42442442	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs530641424	chr15:42442496-42442497	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs201621023	chr15:42442526-42442527	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs375924350	chr15:42442536-42442537	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs368286762	chr15:42442543-42442544	Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs200239069	chr15:42442591-42442592	Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs538612068	chr15:42442611-42442612	Weak transcription Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs147411324	chr15:42442632-42442633	Weak transcription Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs577270926	chr15:42442640-42442641	Weak transcription Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs139618263	chr15:42442643-42442644	Weak transcription Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs372857549	chr15:42442662-42442663	Weak transcription Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Cancer	21129771	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21045282	CNVD
Breast cancer	22032731	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Myelofibrosis	22110671	CNVD
Maculopathy	20981449	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:559 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42411600-42444200	Weak transcription	Right Atrium	heart
2	chr15:42433800-42442800	Weak transcription	Gastric	stomach
3	chr15:42434600-42442600	Weak transcription	Esophagus	oesophagus
4	chr15:42435000-42442400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr15:42435800-42443400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:42435800-42443600	Weak transcription	Colonic Mucosa	Colon
7	chr15:42436000-42452000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:42439200-42442400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:42439400-42442800	Weak transcription	NHEK	skin
10	chr15:42439400-42443600	Weak transcription	Placenta	Placenta
11	chr15:42439400-42451200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:42439400-42451800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:42439600-42443400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:42439600-42444200	Weak transcription	Fetal Intestine Small	intestine
15	chr15:42439600-42448600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:42439800-42442200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:42440600-42442000	Enhancers	Fetal Heart	heart
18	chr15:42440600-42442000	Enhancers	Right Ventricle	heart
19	chr15:42441200-42450600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr15:42441600-42443000	Bivalent Enhancer	HepG2	liver
21	chr15:42441600-42443600	Weak transcription	Left Ventricle	heart
22	chr15:42441600-42446200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:42441800-42451000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr15:42442000-42443000	Weak transcription	Right Ventricle	heart
25	chr15:42442000-42443600	Weak transcription	Fetal Heart	heart
26	chr15:42442200-42442800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:42442400-42442800	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr15:42442400-42443000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:42442600-42443200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:42442600-42445000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:42442600-42447000	Enhancers	Esophagus	oesophagus
32	chr15:42442600-42447400	Weak transcription	Spleen	Spleen
33	chr15:42442800-42443000	Enhancers	Gastric	stomach
34	chr15:42442800-42443800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:42442800-42445000	Enhancers	NHEK	skin
36	chr15:42442800-42445400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:42443000-42443200	Enhancers	HMEC	breast
38	chr15:42443000-42443400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:42443000-42443400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr15:42443000-42443400	Weak transcription	Gastric	stomach
41	chr15:42443000-42445000	Enhancers	Right Ventricle	heart
42	chr15:42443000-42445600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:42443200-42444200	Weak transcription	HMEC	breast
44	chr15:42443200-42445000	Enhancers	Brain Anterior Caudate	brain
45	chr15:42443400-42443800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr15:42443400-42444000	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr15:42443400-42444800	Enhancers	Osteobl	bone
48	chr15:42443400-42445200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:42443400-42445400	Enhancers	Fetal Muscle Trunk	muscle
50	chr15:42443400-42447600	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links