Variant report

Variant	nsv9262
Chromosome Location	chr15:45386953-45389379
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:120 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562843154	chr15:45386995-45386996	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs113739971	chr15:45387046-45387047	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs141471840	chr15:45387047-45387048	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs567910901	chr15:45387080-45387081	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs369718421	chr15:45387112-45387113	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs527614780	chr15:45387119-45387120	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs373156594	chr15:45387120-45387121	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs547305046	chr15:45387123-45387124	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs570699350	chr15:45387140-45387141	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs199546504	chr15:45387154-45387155	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs556085563	chr15:45387208-45387209	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs115865111	chr15:45387209-45387210	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs374542623	chr15:45387211-45387212	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs369293283	chr15:45387233-45387234	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs201359292	chr15:45387246-45387247	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs202111673	chr15:45387256-45387257	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs372728124	chr15:45387261-45387262	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs138680550	chr15:45387267-45387268	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs141695502	chr15:45387273-45387274	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs543451367	chr15:45387279-45387280	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs376278620	chr15:45387315-45387316	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs370316195	chr15:45387317-45387318	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs570434058	chr15:45387367-45387368	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs111280439	chr15:45387389-45387390	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs534369541	chr15:45387447-45387448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs554524568	chr15:45387460-45387461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs199138	chr15:45387550-45387551	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs139533869	chr15:45387570-45387571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201835313	chr15:45387589-45387590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs199732099	chr15:45387591-45387592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs200592189	chr15:45387592-45387593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs377517657	chr15:45387632-45387633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs371129031	chr15:45387647-45387648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs186747221	chr15:45387657-45387658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs144186721	chr15:45387667-45387668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs139584933	chr15:45387718-45387719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs200172076	chr15:45387741-45387742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs141857016	chr15:45387747-45387748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs200872016	chr15:45387755-45387756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs201795772	chr15:45387765-45387766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs150609056	chr15:45387776-45387777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs201451019	chr15:45387777-45387778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs549559724	chr15:45387794-45387795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs368206523	chr15:45387796-45387797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs569614567	chr15:45387805-45387806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs139966362	chr15:45387826-45387827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs568300120	chr15:45387835-45387836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs558245016	chr15:45387854-45387855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs16977579	chr15:45387899-45387900	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs576563372	chr15:45387908-45387909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	21129771	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21045282	CNVD
Breast cancer	22032731	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Melanoma	17363583	CNVD
Acute myeloid leukemia	19651601	CNVD
Marfan syndrome	17492313	CNVD
Esophageal adenocarcinoma	18820669	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45363800-45398400	Weak transcription	Gastric	stomach
2	chr15:45373600-45389400	Weak transcription	Pancreas	Pancrea
3	chr15:45381400-45404600	Weak transcription	Right Atrium	heart
4	chr15:45383400-45395200	Weak transcription	Colonic Mucosa	Colon
5	chr15:45385600-45387400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr15:45386200-45387000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:45386400-45387200	Strong transcription	Esophagus	oesophagus
8	chr15:45386400-45387400	Enhancers	Right Ventricle	heart
9	chr15:45387000-45387200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:45387200-45391600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:45387200-45391600	Weak transcription	Esophagus	oesophagus
12	chr15:45387400-45393200	Weak transcription	Right Ventricle	heart
13	chr15:45389200-45390400	Enhancers	Stomach Mucosa	stomach

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